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Search of human proteins with 103472001
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|103472001 NADH dehydrogenase (ubiquinone) 1 alpha
subcomplex, 7, 14.5kDa [Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|103472001 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,... 230 2e-61
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 32 0.11
gi|110349734 TatD DNase domain containing 3 isoform 2 [Homo sapi... 31 0.24
gi|4557733 latent transforming growth factor beta binding protei... 30 0.54
gi|124430752 kinesin family member 26B [Homo sapiens] 29 0.70
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 29 0.92
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 29 0.92
gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo sapi... 29 0.92
gi|110349730 TatD DNase domain containing 3 isoform 1 [Homo sapi... 29 0.92
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 29 0.92
gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens] 29 0.92
gi|193083143 SH3 domain containing 19 isoform b [Homo sapiens] 29 0.92
gi|193083141 SH3 domain containing 19 isoform a [Homo sapiens] 29 0.92
gi|51173722 bromodomain and PHD finger-containing protein 1 isof... 29 0.92
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 29 0.92
gi|51173720 bromodomain and PHD finger-containing protein 1 isof... 29 0.92
gi|20070205 ladinin 1 [Homo sapiens] 28 1.2
gi|110349719 titin isoform N2-A [Homo sapiens] 28 1.6
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 28 1.6
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|119943102 CREB binding protein isoform b [Homo sapiens] 27 2.7
gi|119943104 CREB binding protein isoform a [Homo sapiens] 27 2.7
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 27 2.7
gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens] 27 2.7
gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens] 27 2.7
gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo sapi... 27 2.7
gi|153792764 hypothetical protein LOC57624 [Homo sapiens] 27 3.5
gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens] 27 3.5
gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo ... 27 4.6
>gi|103472001 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7,
14.5kDa [Homo sapiens]
Length = 113
Score = 230 bits (586), Expect = 2e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MASATRLIQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGR 60
MASATRLIQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGR
Sbjct: 1 MASATRLIQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGR 60
Query: 61 RESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKRWELSSDQPYL 113
RESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKRWELSSDQPYL
Sbjct: 61 RESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKRWELSSDQPYL 113
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 38 PPKLPV---GPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKA 94
PP+ P+ GPS L+ N RR P S S E A EK+A
Sbjct: 2063 PPRAPILSKGPSPPLNGNILSCSPDRRSPSPKESGRSHWDDSTSDSELEKGAREQPEKEA 2122
Query: 95 VTPAPP 100
+P+PP
Sbjct: 2123 QSPSPP 2128
>gi|110349734 TatD DNase domain containing 3 isoform 2 [Homo
sapiens]
Length = 273
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 57 RDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKR--WELSSDQPYL 113
R G S+PPSII S Q+ LV P +S T+ A+ P ++ W +S Y+
Sbjct: 184 RAGYFFSIPPSIIRSGQQKLVKQLPL-TSICLETDSPALGPEKQVRNEPWNISISAEYI 241
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 20 LQGKLQLRYQEISKRTQPPPKLPVGPSHKL--SNNYYCTRDGRRESVPPS 67
++G ++ E S T+PPP LP P H L SNN +PP+
Sbjct: 494 VRGGVEEALVENSVETRPPPWLPASPGHSLWDSNNIPARSGEPPRPLPPA 543
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 50 SNNYYCTRD----GRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKRWE 105
S +YYC + G PPS KA + GK A K P PP+++
Sbjct: 1552 SLSYYCAAETNGVGAASGTPPS------KATLEGKVASPKHCVLARPKGTPPLPPVRKSS 1605
Query: 106 L 106
L
Sbjct: 1606 L 1606
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 28.9 bits (63), Expect = 0.92
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 18 HDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALV 77
HD G L EI + PP LP GPS L+ S M++Q +
Sbjct: 1936 HDPCGPNPLEPGEIREYVPPPVPLPPGPSTHLAEQ--------------STGMAAQAPKM 1981
Query: 78 SGKP---------AESSAVAATEKKAVTPAPPIKRWELSSDQP 111
S KP A+A T ++ + P P++R + S QP
Sbjct: 1982 SDKPPADTNQMLSLSKKALAGTCQRPLLPERPLERTD-SRPQP 2023
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 28.9 bits (63), Expect = 0.92
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 18 HDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALV 77
HD G L EI + PP LP GPS L+ S M++Q +
Sbjct: 2205 HDPCGPNPLEPGEIREYVPPPVPLPPGPSTHLAEQ--------------STGMAAQAPKM 2250
Query: 78 SGKP---------AESSAVAATEKKAVTPAPPIKRWELSSDQP 111
S KP A+A T ++ + P P++R + S QP
Sbjct: 2251 SDKPPADTNQMLSLSKKALAGTCQRPLLPERPLERTD-SRPQP 2292
>gi|226061614 TatD DNase domain containing 3 isoform 4 [Homo
sapiens]
Length = 253
Score = 28.9 bits (63), Expect = 0.92
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 57 RDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKR--WELSSDQPYL 113
R G S+PPSII S QK + + +S T+ A+ P ++ W +S Y+
Sbjct: 163 RAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYI 221
>gi|110349730 TatD DNase domain containing 3 isoform 1 [Homo
sapiens]
Length = 274
Score = 28.9 bits (63), Expect = 0.92
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 57 RDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKR--WELSSDQPYL 113
R G S+PPSII S QK + + +S T+ A+ P ++ W +S Y+
Sbjct: 184 RAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYI 242
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 28.9 bits (63), Expect = 0.92
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 15 ASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQK 74
+ GH L G L TQPPP LP KL R G PS+ +
Sbjct: 1216 SEGHRLPGHGPLSSSAPGASTQPPPHLPT----KL-----VIRHGGAGG-SPSVTWARAS 1265
Query: 75 ALVSGKPAESSAVAATEKKAVTP-----APPIKRWELSS 108
+ +S + SSA ++ + P PPIK +E S
Sbjct: 1266 SSLSSSSSSSSAASSLDADEDGPMPSRNRPPIKTYEARS 1304
>gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens]
Length = 731
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 63 SVPPSIIMSSQKALVSGKPAESSA-----------VAATEKKAVTPAPPIK 102
S+PP +SS K V+ KPA + A + T K+ +TP PP++
Sbjct: 41 SLPPKPTVSSGKPSVAPKPAANRASGEWDSGTENRLKVTSKEGLTPYPPLQ 91
>gi|193083143 SH3 domain containing 19 isoform b [Homo sapiens]
Length = 767
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 63 SVPPSIIMSSQKALVSGKPAESSA-----------VAATEKKAVTPAPPIK 102
S+PP +SS K V+ KPA + A + T K+ +TP PP++
Sbjct: 41 SLPPKPTVSSGKPSVAPKPAANRASGEWDSGTENRLKVTSKEGLTPYPPLQ 91
>gi|193083141 SH3 domain containing 19 isoform a [Homo sapiens]
Length = 790
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 63 SVPPSIIMSSQKALVSGKPAESSA-----------VAATEKKAVTPAPPIK 102
S+PP +SS K V+ KPA + A + T K+ +TP PP++
Sbjct: 41 SLPPKPTVSSGKPSVAPKPAANRASGEWDSGTENRLKVTSKEGLTPYPPLQ 91
>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform
2 [Homo sapiens]
Length = 1214
Score = 28.9 bits (63), Expect = 0.92
Identities = 18/84 (21%), Positives = 35/84 (41%)
Query: 18 HDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALV 77
H++ + + + + + +T PPK P P + + G P IMSS +
Sbjct: 884 HEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQRK 943
Query: 78 SGKPAESSAVAATEKKAVTPAPPI 101
G+ S+ + ++ T PP+
Sbjct: 944 RGRSPRPSSSSDSDSDKSTEDPPM 967
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 28.9 bits (63), Expect = 0.92
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 3 SATRLIQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRE 62
S TR +R R+ + + + + R + +R PP ++P P H+ S + R RR
Sbjct: 294 SHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRS--PVRRRRRS 351
Query: 63 SVPPSIIMSSQKALVSGKPAE------SSAVAATEKKAVTPAPPIKR 103
S S SS + S P + SS T + + + +PP +R
Sbjct: 352 SASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRR 398
>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform
1 [Homo sapiens]
Length = 1220
Score = 28.9 bits (63), Expect = 0.92
Identities = 18/84 (21%), Positives = 35/84 (41%)
Query: 18 HDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALV 77
H++ + + + + + +T PPK P P + + G P IMSS +
Sbjct: 890 HEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQRK 949
Query: 78 SGKPAESSAVAATEKKAVTPAPPI 101
G+ S+ + ++ T PP+
Sbjct: 950 RGRSPRPSSSSDSDSDKSTEDPPM 973
>gi|20070205 ladinin 1 [Homo sapiens]
Length = 517
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 62 ESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPAPPIKRWELSSDQP 111
+S+ P + + S + LVS K + A+EK A P + +S+QP
Sbjct: 241 KSLAPGMALGSGRRLVSEKASIFEKALASEKSPTADAKPAPKRATASEQP 290
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 33 KRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEK 92
K PPPK+P P + ++ VPP+ + KA V E A
Sbjct: 10517 KPEAPPPKVPEAPKEVVPEKKVPVPPPKKPEVPPTKVPEVPKAAV----PEKKVPEAIPP 10572
Query: 93 KAVTPAPPI 101
K +P P +
Sbjct: 10573 KPESPPPEV 10581
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 33 KRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEK 92
K PPK+P P + +++ PP+ + QK +V+ E + +
Sbjct: 9336 KEPAAPPKVPEVPKKPVPEEKIPVPVAKKKEAPPAKVPEVQKGVVT---EEKITIVTQRE 9392
Query: 93 KAVTPAPP 100
++ PA P
Sbjct: 9393 ESPPPAVP 9400
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 31 ISKRTQPPPKLPVGP 45
ISKR +PPPK+P P
Sbjct: 9278 ISKRVEPPPKVPELP 9292
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 25 QLRYQEISK-RTQPPPKLPVGPSHKLSN--NYYCTRDGRRESVPPSIIMSSQKALVSGKP 81
Q Y + S+ RTQ KL G HKL + + ++ R + + ++ +Q A++ G P
Sbjct: 121 QYTYSQASEIRTQ---KLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGAP 177
Query: 82 AESSAVAATEKKAVTPAPPI-KRWELSSDQPY 112
+ ++K PAP I R++ QP+
Sbjct: 178 DSALRQLLSQKPMEPPAPAIPSRYQQVPQQPH 209
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 57 RDGRRESVPPSIIMSSQKALVSGKPAESSAVAATE--KKAVTPAPPI 101
R G R++ PP ++ A + +P +S +T +TPAPP+
Sbjct: 54 RAGERDTAPPLMLPGPTIATSATRPPPASNEVSTSVLSSTITPAPPM 100
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 57 RDGRRESVPPSIIMSSQKALVSGKPAESSAVAATE--KKAVTPAPPI 101
R G R++ PP ++ A + +P +S +T +TPAPP+
Sbjct: 54 RAGERDTAPPLMLPGPTIATSATRPPPASNEVSTSVLSSTITPAPPM 100
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 37 PPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVT 96
P P+ PV P + + + PP +S A + + S+VA+ E +
Sbjct: 890 PQPQTPVQPPSVATPQSSQQQPTPVHAQPPGTPLSQAAASIDNRVPTPSSVASAETNSQQ 949
Query: 97 PAPPIKRWELSSD 109
P P + E+ ++
Sbjct: 950 PGPDVPVLEMKTE 962
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 37 PPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVT 96
P P+ PV P + + + PP +S A + + S+VA+ E +
Sbjct: 928 PQPQTPVQPPSVATPQSSQQQPTPVHAQPPGTPLSQAAASIDNRVPTPSSVASAETNSQQ 987
Query: 97 PAPPIKRWELSSD 109
P P + E+ ++
Sbjct: 988 PGPDVPVLEMKTE 1000
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 57 RDGRRESVPPSIIMSSQKA----LVSGK-PAESSAVAA-TEKKAVTPAPPIKRWELSS 108
R+GRR+S S+ S L S K P S +AA T ++TPAP IK+ E S+
Sbjct: 347 REGRRQSFGGSLFAYSPGGAHGMLSSPKLPVSSLGLAASTNGSSITPAPKIKKEEDSA 404
>gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens]
Length = 2540
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 3 SATRLIQRLRNWASGHDLQGKLQLRYQEISKRTQPP 38
S ++ +L++W SG D + + RY+++ K P
Sbjct: 2253 SGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLP 2288
>gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens]
Length = 2303
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 3 SATRLIQRLRNWASGHDLQGKLQLRYQEISKRTQPP 38
S ++ +L++W SG D + + RY+++ K P
Sbjct: 2016 SGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLP 2051
>gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo
sapiens]
Length = 1157
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 22 GKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKP 81
GKL+ RY I R Q P GP PP + K + G
Sbjct: 2 GKLRRRYN-IKGRQQAGPGPSKGPPEP----------------PPVQLELEDKDTLKGVD 44
Query: 82 AESSAVAATEKKAVTPAPPIKRWE 105
A ++ V +KK T APP+ + E
Sbjct: 45 ASNALVLPGKKKKKTKAPPLSKKE 68
>gi|153792764 hypothetical protein LOC57624 [Homo sapiens]
Length = 653
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 25/91 (27%)
Query: 34 RTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAESSAVAAT--- 90
R QPPPK PS KLS + S +SS A SGK E + +A
Sbjct: 136 RRQPPPKPKRDPSTKLSTS--------------SETVSSTAASKSGKTPERTEASAKPRP 181
Query: 91 -----EKKAVTPAP---PIKRWELSSDQPYL 113
KK P P P + S D+ Y+
Sbjct: 182 HSDEYSKKIPPPKPKRNPNTQLSTSFDETYI 212
>gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens]
Length = 669
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 25/91 (27%)
Query: 34 RTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAESSAVAAT--- 90
R QPPPK PS KLS + S +SS A SGK E + +A
Sbjct: 136 RRQPPPKPKRDPSTKLSTS--------------SETVSSTAASKSGKTPERTEASAKPRP 181
Query: 91 -----EKKAVTPAP---PIKRWELSSDQPYL 113
KK P P P + S D+ Y+
Sbjct: 182 HSDEYSKKIPPPKPKRNPNTQLSTSFDETYI 212
>gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo
sapiens]
Length = 194
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 74 KALVSGKPAESSAVAATEKKAVTPAPPIKRWE 105
KA +SG PA +AV + EK+ TP K WE
Sbjct: 2 KASISGAPAARTAVNSEEKQPDTPHQD-KLWE 32
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,012,057
Number of Sequences: 37866
Number of extensions: 211972
Number of successful extensions: 825
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 64
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.