Guide to the Human Genome
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Name: CBLN4 Sequence: fasta or formatted (201aa) NCBI GI: 18104944
Description:

cerebellin 4 precursor

Referenced in:

Cerebellum
Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         14           2
 C cysteine            1.0          2           1
 D aspartate           4.0          8           1
 E glutamate           4.0          8           1
 F phenylalanine       5.5         11           2
 G glycine             7.5         15           2
 H histidine           1.0          2           1
 I isoleucine          4.5          9           2
 K lysine              6.0         12           1
 L leucine            10.4         21           2
 M methionine          1.5          3           1
 N asparagine          5.5         11           1
 P proline             5.0         10           1
 Q glutamine           3.0          6           1
 R arginine            3.5          7           2
 S serine             10.4         21           4
 T threonine           5.0         10           1
 V valine             11.4         23           2
 W tryptophan          1.0          2           1
 Y tyrosine            3.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cerebellin 4 precursor 
CBLN2                 0.688   cerebellin 2 precursor 
CBLN1                 0.661   cerebellin 1 precursor 
CBLN3                 0.454   cerebellin 3 precursor 
CAPRIN2               0.177   C1q domain containing 1 isoform 1 
CAPRIN2               0.177   C1q domain containing 1 isoform 3 
CAPRIN2               0.177   C1q domain containing 1 isoform 2 
C1QL4                 0.159   complement component 1, q subcomponent-like 4 
C1QL2                 0.151   complement component 1, q subcomponent-like 2 [Homo...
C1QTNF3               0.129   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF3               0.129   C1q and tumor necrosis factor related protein 3 isof...
C1QL3                 0.126   complement component 1, q subcomponent-like 3 
C1QL1                 0.126   complement component 1, q subcomponent-like 1 
C1QTNF5               0.078   C1q and tumor necrosis factor related protein 5 prec...
C1QTNF4               0.067   C1q and tumor necrosis factor related protein 4 [Ho...
C1QB                  0.067   complement component 1, q subcomponent, B chain prec...
C1QTNF7               0.062   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.062   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.062   C1q and tumor necrosis factor related protein 7 iso...
COL8A2                0.059   collagen, type VIII, alpha 2 
C1QC                  0.056   complement component 1, q subcomponent, C chain prec...
C1QC                  0.056   complement component 1, q subcomponent, C chain pre...
COL10A1               0.056   type X collagen alpha 1 precursor 
COL8A1                0.056   alpha 1 type VIII collagen precursor 
COL8A1                0.056   alpha 1 type VIII collagen precursor 
C1QA                  0.054   complement component 1, q subcomponent, A chain precu...
OTOL1                 0.040   hypothetical protein LOC131149 
C1QTNF6               0.035   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF6               0.035   C1q and tumor necrosis factor related protein 6 [Hom...
ADIPOQ                0.032   adiponectin precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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