Guide to the Human Genome
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Name: ANKRD53 Sequence: fasta or formatted (530aa) NCBI GI: 169403959
Description:

ankyrin repeat domain 53 isoform a

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [343aa] ankyrin repeat domain 53 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         49           3
 C cysteine            1.5          8           1
 D aspartate           5.1         27           2
 E glutamate           4.2         22           2
 F phenylalanine       3.2         17           1
 G glycine             5.1         27           2
 H histidine           4.2         22           1
 I isoleucine          3.0         16           1
 K lysine              5.7         30           2
 L leucine             9.2         49           2
 M methionine          2.6         14           1
 N asparagine          3.4         18           2
 P proline             8.7         46           2
 Q glutamine           5.3         28           2
 R arginine            7.2         38           2
 S serine              6.8         36           2
 T threonine           6.4         34           2
 V valine              4.9         26           1
 W tryptophan          2.1         11           1
 Y tyrosine            2.3         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 53 isoform a 
ANKRD53               0.552   ankyrin repeat domain 53 isoform b 
ANKRD10               0.058   ankyrin repeat domain 10 
ANK1                  0.048   ankyrin 1 isoform 9 
ANK1                  0.048   ankyrin 1 isoform 1 
ANK1                  0.048   ankyrin 1 isoform 3 
ANK1                  0.048   ankyrin 1 isoform 2 
ANK1                  0.048   ankyrin 1 isoform 4 
RAI14                 0.047   retinoic acid induced 14 isoform d 
RAI14                 0.047   retinoic acid induced 14 isoform c 
RAI14                 0.047   retinoic acid induced 14 isoform b 
RAI14                 0.047   retinoic acid induced 14 isoform a 
RAI14                 0.047   retinoic acid induced 14 isoform a 
RAI14                 0.047   retinoic acid induced 14 isoform a 
ANK2                  0.046   ankyrin 2 isoform 3 
ANK2                  0.046   ankyrin 2 isoform 2 
ANK2                  0.046   ankyrin 2 isoform 1 
ANK3                  0.044   ankyrin 3 isoform 1 
ANKRD28               0.041   ankyrin repeat domain 28 
ASB8                  0.041   ankyrin repeat and SOCS box-containing 8 
ASB3                  0.041   ankyrin repeat and SOCS box-containing protein 3 isof...
ANKRD52               0.040   ankyrin repeat domain 52 
ANKK1                 0.039   ankyrin repeat and kinase domain containing 1 
INVS                  0.037   inversin isoform a 
INVS                  0.037   inversin isoform b 
ANKRA2                0.037   ankyrin repeat, family A (RFXANK-like), 2 
UACA                  0.037   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.037   uveal autoantigen with coiled-coil domains and ankyr...
TNNI3K                0.036   TNNI3 interacting kinase isoform b 
TNNI3K                0.036   TNNI3 interacting kinase isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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