Search of human proteins with 169212010

Search of human proteins with 169212010

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169212010 PREDICTED: hypothetical protein [Homo sapiens]
         (148 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169212010 PREDICTED: hypothetical protein [Homo sapiens]           330   3e-91
gi|169160983 PREDICTED: hypothetical protein [Homo sapiens]            32   0.19 
gi|4557871 transferrin [Homo sapiens]                                  31   0.33 
gi|148226288 lipocalin-like 1 [Homo sapiens]                           28   2.1  
gi|171184447 myozenin 3 [Homo sapiens]                                 28   2.8  
gi|171184445 myozenin 3 [Homo sapiens]                                 28   2.8  
gi|147904700 semaphorin 5A [Homo sapiens]                              28   3.7  
gi|224922791 amidohydrolase domain containing 2 isoform 2 [Homo ...    27   6.2  
gi|153792575 hypothetical protein LOC90120 [Homo sapiens]              27   6.2  
gi|239755871 PREDICTED: hypothetical protein [Homo sapiens]            27   8.2  
gi|239750347 PREDICTED: hypothetical protein XP_002347376 [Homo ...    27   8.2  
gi|239744651 PREDICTED: hypothetical protein XP_002343214 [Homo ...    27   8.2  
gi|32261318 unc-5 homolog B [Homo sapiens]                             27   8.2  

>gi|169212010 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score =  330 bits (846), Expect = 3e-91
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MRCVTRTRHWWRRAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSWKD 60
           MRCVTRTRHWWRRAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSWKD
Sbjct: 1   MRCVTRTRHWWRRAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSWKD 60

Query: 61  FWKPVGPAPHVLDVKREAQRGLKLTQPFTVACKIDPGLYKSGLGFPPQLFTGCAYLNTYV 120
           FWKPVGPAPHVLDVKREAQRGLKLTQPFTVACKIDPGLYKSGLGFPPQLFTGCAYLNTYV
Sbjct: 61  FWKPVGPAPHVLDVKREAQRGLKLTQPFTVACKIDPGLYKSGLGFPPQLFTGCAYLNTYV 120

Query: 121 YPWQAQAEYLRYPRDSNRRKRITPSACL 148
           YPWQAQAEYLRYPRDSNRRKRITPSACL
Sbjct: 121 YPWQAQAEYLRYPRDSNRRKRITPSACL 148


>gi|169160983 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 10 WWRRAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSWKDFWKPVG 66
          WWR A R   AG+ A +  + ++  +  G        W  GR T C  W+   KP+G
Sbjct: 44 WWRSALRSLLAGAEARFQGLEEKASSGEG------LGWRGGRETGCGGWEP-PKPLG 93


>gi|4557871 transferrin [Homo sapiens]
          Length = 698

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 33 VCTRVGTCAAC------WCSWSTGRSTACPSWKDFWKPVGPA--PHVLDVKR 76
          VC  +G C A       WC+ S   +T C S++D  K V P+  P V  VK+
Sbjct: 10 VCAVLGLCLAVPDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKK 61


>gi|148226288 lipocalin-like 1 [Homo sapiens]
          Length = 164

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 16/52 (30%), Positives = 20/52 (38%)

Query: 13  RAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSWKDFWKP 64
           R  R PR GS    + + +      G  A  WC W    +  CPS   F  P
Sbjct: 109 RRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPP 160


>gi|171184447 myozenin 3 [Homo sapiens]
          Length = 251

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 96  PGLYKSGLGFPPQLFTGCAYLNTYVYPWQAQAEYLRYPRDSNRRKRITPS 145
           PG  +   G PP+ F   A    Y  PWQ    Y  Y  D       TPS
Sbjct: 141 PGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGRSH---TPS 187


>gi|171184445 myozenin 3 [Homo sapiens]
          Length = 251

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 96  PGLYKSGLGFPPQLFTGCAYLNTYVYPWQAQAEYLRYPRDSNRRKRITPS 145
           PG  +   G PP+ F   A    Y  PWQ    Y  Y  D       TPS
Sbjct: 141 PGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGRSH---TPS 187


>gi|147904700 semaphorin 5A [Homo sapiens]
          Length = 1074

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 27  VAVRKQVCTRVGTCAACWCSWSTGRSTACPSWKDF--WKPVGPAPHVLDVKREAQRGLKL 84
           +  R+++C     CA C   + +  +  CP  K    W P  P          +  G   
Sbjct: 673 IQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPWTPWTPV-------NISDNGGHY 725

Query: 85  TQPFTVACK---IDPGLYKSG 102
            Q F   CK    DP L + G
Sbjct: 726 EQRFRYTCKARLADPNLLEVG 746


>gi|224922791 amidohydrolase domain containing 2 isoform 2 [Homo
           sapiens]
          Length = 594

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 7   TRHWWRRAARMPRAGSSAWWVAVRKQVCTR-VGTCAACWCSWSTGRSTACPSWKDFWKPV 65
           T  W  RA R+P      W       + T  VG+    WCS ++G      S  +FW   
Sbjct: 470 TPMWQTRAVRLPEQLRGGWASGALLALRTATVGSDVRDWCSPTSGVIVLTFSPFEFWGGW 529

Query: 66  GPAP 69
            P+P
Sbjct: 530 LPSP 533


>gi|153792575 hypothetical protein LOC90120 [Homo sapiens]
          Length = 135

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 8/51 (15%)

Query: 12  RRAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSWKDFW 62
           R   R P + + + W       C    +C  C C W+ G      +W   W
Sbjct: 93  RSGVRWPPSSAYSTWAFA--SCCASSASCRCCCCCWAAG------AWTSAW 135


>gi|239755871 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 282

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 13  RAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSW 58
           R++    AG++ + V    ++ +  G   A  C+W +G S    +W
Sbjct: 218 RSSSSTSAGAATYTVRTVPKLASHTGPKCAAPCTWGSGHSGHLDTW 263


>gi|239750347 PREDICTED: hypothetical protein XP_002347376 [Homo
           sapiens]
          Length = 282

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 13  RAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSW 58
           R++    AG++ + V    ++ +  G   A  C+W +G S    +W
Sbjct: 218 RSSSSTSAGAATYTVRTVPKLASHTGPKCAAPCTWGSGHSGHLDTW 263


>gi|239744651 PREDICTED: hypothetical protein XP_002343214 [Homo
           sapiens]
          Length = 282

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 13  RAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSW 58
           R++    AG++ + V    ++ +  G   A  C+W +G S    +W
Sbjct: 218 RSSSSTSAGAATYTVRTVPKLASHTGPKCAAPCTWGSGHSGHLDTW 263


>gi|32261318 unc-5 homolog B [Homo sapiens]
          Length = 945

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 3   CVTRTRHWWRRAARMP------RAGSSAWWVAVRKQVCTRVGTCAACWCSWS--TGRSTA 54
           C  R    W++  R          G+     A +K  CT +      W  WS  +  ST 
Sbjct: 258 CSNRCGRGWQKRTRTCTNPAPLNGGAFCEGQAFQKTACTTICPVDGAWTEWSKWSACSTE 317

Query: 55  CPSWK 59
           C  W+
Sbjct: 318 CAHWR 322


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.135    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,827,915
Number of Sequences: 37866
Number of extensions: 311030
Number of successful extensions: 927
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 13
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.