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Search of human proteins with 169211534
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169211534 PREDICTED: hypothetical protein [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169211534 PREDICTED: hypothetical protein [Homo sapiens] 440 e-124
gi|169218016 PREDICTED: hypothetical protein [Homo sapiens] 440 e-124
gi|169210726 PREDICTED: hypothetical protein [Homo sapiens] 440 e-124
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 40 0.001
gi|151301154 mucin 6, gastric [Homo sapiens] 39 0.003
gi|163965366 nascent polypeptide-associated complex alpha subuni... 37 0.012
gi|50345997 E1A binding protein p300 [Homo sapiens] 37 0.015
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.015
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 37 0.015
gi|24497609 nucleoporin 62kDa [Homo sapiens] 36 0.026
gi|24497607 nucleoporin 62kDa [Homo sapiens] 36 0.026
gi|24497605 nucleoporin 62kDa [Homo sapiens] 36 0.026
gi|24497603 nucleoporin 62kDa [Homo sapiens] 36 0.026
gi|223941923 OTU domain containing 1 [Homo sapiens] 35 0.034
gi|39812378 RAN binding protein 9 [Homo sapiens] 35 0.045
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 35 0.058
gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo sapi... 35 0.058
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 35 0.058
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.076
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 34 0.076
gi|13375926 vacuolar protein sorting 37B [Homo sapiens] 34 0.076
gi|33186895 selenoprotein V [Homo sapiens] 34 0.076
gi|122937440 multiple EGF-like-domains 9 [Homo sapiens] 34 0.076
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 34 0.099
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 34 0.099
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 34 0.099
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 34 0.099
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 34 0.099
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 34 0.099
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 34 0.099
>gi|169211534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 440 bits (1132), Expect = e-124
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MREPLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREI 60
MREPLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREI
Sbjct: 1 MREPLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREI 60
Query: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL 120
PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL
Sbjct: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL 120
Query: 121 HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVC 180
HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVC
Sbjct: 121 HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVC 180
Query: 181 LLPTSSMLTSPGTGGCIRARILEPA 205
LLPTSSMLTSPGTGGCIRARILEPA
Sbjct: 181 LLPTSSMLTSPGTGGCIRARILEPA 205
>gi|169218016 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 440 bits (1132), Expect = e-124
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MREPLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREI 60
MREPLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREI
Sbjct: 1 MREPLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREI 60
Query: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL 120
PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL
Sbjct: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL 120
Query: 121 HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVC 180
HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVC
Sbjct: 121 HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVC 180
Query: 181 LLPTSSMLTSPGTGGCIRARILEPA 205
LLPTSSMLTSPGTGGCIRARILEPA
Sbjct: 181 LLPTSSMLTSPGTGGCIRARILEPA 205
>gi|169210726 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 440 bits (1132), Expect = e-124
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MREPLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREI 60
MREPLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREI
Sbjct: 1 MREPLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREI 60
Query: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL 120
PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL
Sbjct: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL 120
Query: 121 HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVC 180
HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVC
Sbjct: 121 HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVC 180
Query: 181 LLPTSSMLTSPGTGGCIRARILEPA 205
LLPTSSMLTSPGTGGCIRARILEPA
Sbjct: 181 LLPTSSMLTSPGTGGCIRARILEPA 205
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 40.0 bits (92), Expect = 0.001
Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 14/158 (8%)
Query: 38 KSKLPVLPDPRLICRYMCSCREIPGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAP 97
K+K P P R+ R + E G TPV + + T +PP S + + P
Sbjct: 2384 KAKAPERPGTRVSERLRGARAETQGANHTPVISAHQTRSTT----TPPRCSPARERVPRP 2439
Query: 98 FQGSWPRPCHALSGPRAMVPNQLHPGTPCPAHVPHSCTMPAGTCP--LFTGAPAAAEAGL 155
P P A + A+VP P A VP S P P + P ++
Sbjct: 2440 APRPRPTPASAPAAIPALVP------VPVSAPVPISAPNPITILPVHILPSPPPPSQIPP 2493
Query: 156 NPGPALRAPTSCS--SSTWPKPFMTVCLLPTSSMLTSP 191
PA P +C+ + P P T + P+S +L P
Sbjct: 2494 CSSPACTPPPACTPPPAHTPPPAQTCLVTPSSPLLLGP 2531
Score = 32.3 bits (72), Expect = 0.29
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 64 ISTPVPHSAGPQVTRFHSPSP-PHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHP 122
++TP+ A PQ T +PSP P ++ L + AP G+ P + + M P+ P
Sbjct: 1583 LATPLAPMAAPQ-TAILAPSPAPPLAPLP--VLAPSPGAAPVLASSQTPVPVMAPSST-P 1638
Query: 123 GTPC----------------------PAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPA 160
GT PA VP PA T L APA A P+
Sbjct: 1639 GTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLAL-APALAPTLGGSSPS 1697
Query: 161 LRAPTSCSSSTWPKPFMTVCLLPTSSMLTSP 191
+ P P T+ L P SS++ +P
Sbjct: 1698 QTLSLGTGNPQGPFPTQTLSLTPASSLVPTP 1728
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 38.9 bits (89), Expect = 0.003
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 66 TPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGTP 125
TPV H+ +R P PP + T +PF + P + P HP T
Sbjct: 1556 TPVAHTNSATSSR---PPPPFTTHSPPTGSSPFSSTGPMTATSFK-TTTTYPTPSHPQTT 1611
Query: 126 CPAHVP----HSCTMPAGTCPLFTGAPAAAEAGLN--PGPALRAPTS--CSSSTWPKPFM 177
P HVP T T T A A A ++ P + PT+ + ST P M
Sbjct: 1612 LPTHVPPFSTSLVTPSTHTVITPTHAQMATSASIHSMPTGTIPPPTTLKATGSTHTAPTM 1671
Query: 178 TVCLLPTSSMLTSPGT 193
T+ TS L+S T
Sbjct: 1672 TLTTSGTSQALSSLNT 1687
Score = 33.1 bits (74), Expect = 0.17
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 59 EIPGVISTPVPHSAGPQVTRFHSPSPPHISELSQ---TLHAPFQGSWPRPCHALSGPRAM 115
++P + S P S Q++ SPSP S +S + H+ Q S P + S A
Sbjct: 2110 QLPHLSSATTPVSTTNQLSSSFSPSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSSFVSAP 2169
Query: 116 VPNQLHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRA--PTSCSSSTWP 173
V + + H T PLF +PAA+ +RA P + SS
Sbjct: 2170 VHSTTLSSGSHSSLSTHPTTASVSASPLFPSSPAAS-------TTIRATLPHTISS---- 2218
Query: 174 KPFMTVCLLPTSSMLTSP 191
PF LLP S++ SP
Sbjct: 2219 -PFTLSALLPISTVTVSP 2235
Score = 30.0 bits (66), Expect = 1.4
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 66 TPVPHSAG-PQVT-----RFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQ 119
TP P S G P +T S S ++ S +LH+ S P + ++ PN
Sbjct: 1715 TPNPTSTGTPPMTVTTSGTSQSRSSFSTAKTSTSLHS-HTSSTHHPEVTSTSTTSITPNH 1773
Query: 120 LHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTV 179
GT P S T P T +P ++ + A + +++T+P P
Sbjct: 1774 TSTGTRTPVAHTTSATSSRLPTPFTTHSPPTGTTPISSTGPVTATSFQTTTTYPTPSHPH 1833
Query: 180 CLLPT-----SSMLTSPGT 193
LPT S+ L +P T
Sbjct: 1834 TTLPTHVPSFSTSLVTPST 1852
Score = 28.9 bits (63), Expect = 3.2
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 77 TRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGTPCPAHVP 131
T + +P PH + T +P + P + P HP T P HVP
Sbjct: 1395 TEYTTPQTPHTTHSPPTAGSPVPSTGPVTATSFHATTTY-PTPSHPETTLPTHVP 1448
Score = 28.5 bits (62), Expect = 4.2
Identities = 35/141 (24%), Positives = 50/141 (35%), Gaps = 13/141 (9%)
Query: 56 SCREIPGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAM 115
+C I G +S P PQ+ +P SQ+ F + C L+ A
Sbjct: 743 TCHCINGRLSCP----QRPQMFLASCQAPKTFKSCSQSSENKFGAACAPTCQMLATGVAC 798
Query: 116 VPNQLHPGTPCPAHVPHSC---TMPAGTCPL-FTGAPAAAEAGLNPGPALRAPTSCSSST 171
VP + PG C + + +P CP F+G A L+ SCS
Sbjct: 799 VPTKCEPGCVCAEGLYENADGQCVPPEECPCEFSGVSYPGGAELHTD---CRTCSCSRGR 855
Query: 172 WPKPFMTVCLLPTSSMLTSPG 192
W T C P++ L G
Sbjct: 856 WACQQGTHC--PSTCTLYGEG 874
Score = 27.7 bits (60), Expect = 7.1
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 8/137 (5%)
Query: 65 STPVPHSAGPQV--TRFHSPSPPHISELSQTLHAPFQ-GSWPRPCHALSGPRAMVPNQLH 121
+T H+A P T S SP S + P+ S P + + P
Sbjct: 1885 ATGSTHTAPPMTPTTSGTSQSPSSFSTAKTSTSLPYHTSSTHHPEVTPTSTTNITPKHTS 1944
Query: 122 PGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVCL 181
GT P S + P T +P + + + A + +++T+P P
Sbjct: 1945 TGTRTPVAHTTSASSSRLPTPFTTHSPPTGSSPFSSTGPMTATSFQTTTTYPTPSHPQTT 2004
Query: 182 LPT-----SSMLTSPGT 193
LPT S+ L +P T
Sbjct: 2005 LPTHVPPFSTSLVTPST 2021
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 37.0 bits (84), Expect = 0.012
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 65 STPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQG-SWPRPCHALSGPRAMVPNQLH-P 122
+TP P + +P+PP + T +P G + P P A + P A P+ P
Sbjct: 923 ATPAPKGIPASPSPKGAPTPP-----AATPPSPKGGPATPSPKWAPTPPAATPPSPKGGP 977
Query: 123 GTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVCLL 182
TP P P T PA T P G PA P P P S S PF
Sbjct: 978 ATPSPKGAP---TPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAST 1034
Query: 183 PTSSMLTSP 191
P ++ SP
Sbjct: 1035 PPAATPPSP 1043
Score = 34.3 bits (77), Expect = 0.076
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL 120
P V++ P P GP +P+P LS T S P+ A P+ +
Sbjct: 888 PSVVNLPFPKE-GPA-----TPAPKQAPALSMT------SSSPKKARATPAPKGI----- 930
Query: 121 HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTS 166
P +P P P T PA T P G PA P P P S
Sbjct: 931 -PASPSPKGAP---TPPAATPPSPKGGPATPSPKWAPTPPAATPPS 972
Score = 29.3 bits (64), Expect = 2.4
Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL 120
P + P P + +P+PP ++ S + P P A + P A P+
Sbjct: 988 PPAATPPSPKGGPATPSPKGAPTPPAVTPPSPK---GSPAATPFPKGASTPPAATPPSP- 1043
Query: 121 HPGTPCPAHVPHSC-TMPAGTCPLFTGAPAAAEAGLNPGPALRAPTS 166
G+P +P T PA T P G PA P P P S
Sbjct: 1044 -KGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPS 1089
Score = 27.7 bits (60), Expect = 7.1
Identities = 35/136 (25%), Positives = 47/136 (34%), Gaps = 9/136 (6%)
Query: 61 PGVISTPVPHSAGPQVTRF-HSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQ 119
P ++ P P + P T F S P + +P + P P A + P A +P+
Sbjct: 1011 PPAVTPPSPKGS-PAATPFPKGASTPPAATPPSPKGSP--AATPLPKGAPTTPAATLPSP 1067
Query: 120 LHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTV 179
G P + + T PA T P G PA P P P S P
Sbjct: 1068 --KGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGA 1125
Query: 180 CLLPTSSMLTSPGTGG 195
PT+ T P G
Sbjct: 1126 ---PTTPAATPPSPKG 1138
Score = 27.7 bits (60), Expect = 7.1
Identities = 30/116 (25%), Positives = 39/116 (33%), Gaps = 7/116 (6%)
Query: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQL 120
P V++ P P +P+PP + T +P P P A+ P
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAPTPP-----AATPPSPKGSPGTPPPKGAPTPPAVTPPS- 1342
Query: 121 HPGTPC-PAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKP 175
GTP PA P S P P AA GPA+ P+ P P
Sbjct: 1343 PKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSP 1398
Score = 27.3 bits (59), Expect = 9.3
Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 103 PRPCHALSGPRAMVPNQLHP-GTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPAL 161
P P A + P A P+ TP P P T PA T P G PA P P
Sbjct: 1212 PSPKGAPTTPAATPPSPKGGLATPSPKGAP---TTPAATPPSPKGGPATPPPKGAPTPPA 1268
Query: 162 RAPTSCSSSTWPKPFMTVCLLPTSSMLTSPGTGG 195
P S P P +++T P G
Sbjct: 1269 ATPPSLKGGLATPPHKGA---PNPAVVTPPSPKG 1299
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 36.6 bits (83), Expect = 0.015
Identities = 43/169 (25%), Positives = 59/169 (34%), Gaps = 35/169 (20%)
Query: 4 PLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKS-KLPVLPDPRLICRYMCSCREIPG 62
PL P A +S+ + C + + G +G P LP P L + S +P
Sbjct: 781 PLAPSSGQAPVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPAL---HQNSPSPVPS 837
Query: 63 VISTPVPHSAGPQVTRFHSPS---------PPHI--SELSQTLHAPFQGSWPRPCHALSG 111
TP PH P + P+ PP + SQ LH P P +
Sbjct: 838 --RTPTPHHTPPSIGAQQPPATTIPAPVPTPPAMPPGPQSQALHPP-------PRQTPTP 888
Query: 112 PRAMVPNQLHPGTPC------PAHVPHS-----CTMPAGTCPLFTGAPA 149
P +P Q+ P P P P S ++P T PL PA
Sbjct: 889 PTTQLPQQVQPSLPAAPSADQPQQQPRSQQSTAASVPTPTAPLLPPQPA 937
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 36.6 bits (83), Expect = 0.015
Identities = 41/139 (29%), Positives = 54/139 (38%), Gaps = 26/139 (18%)
Query: 67 PVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPG--- 123
P P +A + PSPP + L AP S P L P A P+Q P
Sbjct: 318 PPPDNAATPLPATLPPSPPLATPLPL---APPSPSAPPSLQTLPSPPATPPSQAPPSMTT 374
Query: 124 ----------TPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPG-PALRAPTSCSSSTW 172
T P VPHS T P+ P A ++ +A + G P L+A S
Sbjct: 375 PPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHS------ 428
Query: 173 PKPFMTVCLLPTSSMLTSP 191
F+T+ T + LTSP
Sbjct: 429 ---FLTMSPRQTQASLTSP 444
Score = 34.3 bits (77), Expect = 0.076
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 21/128 (16%)
Query: 82 PSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGTPCPAHVPHSCTMP---- 137
PSPP S TL AP + P P ++SGPR + L PG P P S T+
Sbjct: 844 PSPP----ASPTLQAPRRPPTPGPDTSVSGPRLTL--ALAPGPPPPPSRSPSSTLSGPDL 897
Query: 138 AGTCPLFTGAP---AAAEAGLNPGPALRAP-----TSCSSSTW---PKPFMTVCLLPTSS 186
AG T P ++G G A P +C + W P P + P +
Sbjct: 898 AGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAP 957
Query: 187 MLTSPGTG 194
+ P TG
Sbjct: 958 LPWPPATG 965
Score = 28.1 bits (61), Expect = 5.5
Identities = 35/133 (26%), Positives = 45/133 (33%), Gaps = 3/133 (2%)
Query: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAP-FQGSWPRPCHALSGPRAMVPNQ 119
P + + P+ P + SPS + L AP Q P P A P +
Sbjct: 697 PSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPR 756
Query: 120 LHPGTPCPA-HVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMT 178
+ P P VP S PL P A A P P P+ +S PF
Sbjct: 757 VPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATP-PLQALPSPPASFPGQAPFSP 815
Query: 179 VCLLPTSSMLTSP 191
LP S + T P
Sbjct: 816 SASLPMSPLATPP 828
Score = 27.7 bits (60), Expect = 7.1
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 4/106 (3%)
Query: 61 PGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGS--WPRPCHALSGPRAMVPN 118
P + TP P + S +PP + S L P + P PC + P +
Sbjct: 520 PPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTP 579
Query: 119 QLHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAP 164
P TP P PA P G P+ + L P P
Sbjct: 580 P--PETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPP 623
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 36.6 bits (83), Expect = 0.015
Identities = 45/193 (23%), Positives = 66/193 (34%), Gaps = 36/193 (18%)
Query: 4 PLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREIPGV 63
P +PPC ++ G T + + P+ S LP L S PG+
Sbjct: 343 PSLPPCPESA-----------GAATTEALSPPKTPSLLPPLG---------LSQSGPPGL 382
Query: 64 ISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPG 123
+ +P S P P+P + Q A S P G
Sbjct: 383 LPSPSFDSKPPTTLLGLIPAPSMVPATDTKAPPTLQAETATKPQATSAPSPAPKQSFLFG 442
Query: 124 T----PCPAHVPHSCTMPAGTCPLFTGAPAAAEAG-LNPGPALRAPTSCSSSTWPKPFMT 178
T P P + + P P+FT P + + G PGP++ A SSS
Sbjct: 443 TQNTSPSSPAAPAASSAPPMFKPIFTAPPKSEKEGPTPPGPSVTATAPSSSS-------- 494
Query: 179 VCLLPTSSMLTSP 191
LPT++ T+P
Sbjct: 495 ---LPTTTSTTAP 504
Score = 34.7 bits (78), Expect = 0.058
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 69 PHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGTPCP- 127
P GP VT +PS + + T FQ P + GP A VP P P
Sbjct: 478 PTPPGPSVTAT-APSSSSLPTTTSTTAPTFQ-----PVFSSMGPPASVP------LPAPF 525
Query: 128 -AHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSS 186
T P T PLFTG +A A P A S S++ P + + +SS
Sbjct: 526 FKQTTTPATAPTTTAPLFTGLASATSA---VAPITSASPSTDSASKPAFGFGINSVSSSS 582
Query: 187 MLTSPGT 193
+ T+ T
Sbjct: 583 VSTTTST 589
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.026
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 135 TMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSSMLT 189
T PA T P PAA AG PA PT+ +ST P F ++ PTSS T
Sbjct: 183 TAPA-TLPFTPATPAATTAGATQ-PAAPTPTATITSTGPSLFASIATAPTSSATT 235
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.026
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 135 TMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSSMLT 189
T PA T P PAA AG PA PT+ +ST P F ++ PTSS T
Sbjct: 183 TAPA-TLPFTPATPAATTAGATQ-PAAPTPTATITSTGPSLFASIATAPTSSATT 235
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.026
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 135 TMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSSMLT 189
T PA T P PAA AG PA PT+ +ST P F ++ PTSS T
Sbjct: 183 TAPA-TLPFTPATPAATTAGATQ-PAAPTPTATITSTGPSLFASIATAPTSSATT 235
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.8 bits (81), Expect = 0.026
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 135 TMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSSMLT 189
T PA T P PAA AG PA PT+ +ST P F ++ PTSS T
Sbjct: 183 TAPA-TLPFTPATPAATTAGATQ-PAAPTPTATITSTGPSLFASIATAPTSSATT 235
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 35.4 bits (80), Expect = 0.034
Identities = 41/146 (28%), Positives = 50/146 (34%), Gaps = 26/146 (17%)
Query: 5 LIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREIPGVI 64
L PP A + E E GEC A R + +P P SC E+
Sbjct: 36 LQPPGAAGAAPEPET--GECQPAAAAE---HREAAAVPAAKMPAF-----SSCFEVVSGA 85
Query: 65 STPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGT 124
+ P +AGP P PPH + +Q AL R + LH
Sbjct: 86 AAPASAAAGPPGASCKPPLPPHYTSTAQI-----------TVRALGADRLL----LHGPD 130
Query: 125 PCPAHVPHSCTMPAGTCPLFTGAPAA 150
P P S P G C L APAA
Sbjct: 131 PVPG-AAGSAAAPRGRCLLLAPAPAA 155
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 35.0 bits (79), Expect = 0.045
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Query: 66 TPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAM-VPNQLHPGT 124
+P P +A V+ P+PP +S S +P G+ A + + P P T
Sbjct: 20 SPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGLGAAAAALLLHPPPPPPPAT 79
Query: 125 PCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSC----SSSTWPKP 175
P P PA +G PA PGPA APT SS+ P P
Sbjct: 80 AAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPALVAGSSAAAPFP 134
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 34.7 bits (78), Expect = 0.058
Identities = 31/131 (23%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 60 IPGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQ 119
IP +TP P + T H + PH + P + P P P
Sbjct: 1256 IPDPTTTPQPFTTMQPTTMPHPTTTPHPTTTPHPTTTPHPTTTPHPTMTPDPTTTPYPTT 1315
Query: 120 LHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSS------STWP 173
TP P PH T + P+ T G APT S T P
Sbjct: 1316 ----TPDPTTTPHPTTPDPSSTPVITTVSLPTSLGTELSSPTLAPTVKPSLHPQLTFTAP 1371
Query: 174 KPFMTVCLLPT 184
P + +PT
Sbjct: 1372 APHTSTSQIPT 1382
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 65 STPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGT 124
+ P PH++ Q+ PSP S S++ A P PR+ PN T
Sbjct: 1369 TAPAPHTSTSQIPTLE-PSPALESSPSRSSTATSMD--PLSTEDFKPPRSQSPNL----T 1421
Query: 125 PCPAHVPHSCT 135
P P H PHS +
Sbjct: 1422 PPPTHTPHSAS 1432
>gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo
sapiens]
Length = 315
Score = 34.7 bits (78), Expect = 0.058
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 94 LHAPFQGSWPRPCHALSGPRAMVPNQLHPGT-PCPAHVPHSCTMPAGTCPLFTGAPAAAE 152
++ P +G+ R L +A +QL+PGT P P PHS T + + PLF
Sbjct: 1 MYQPSRGAARRLGPCLRAYQARPQDQLYPGTLPFPPLWPHSTTTTSPSSPLF-------- 52
Query: 153 AGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSSMLTSPGTG 194
+P P R PT P P + L ++ ++ PG G
Sbjct: 53 --WSPLPP-RLPTQRLPQVPPLPLPQIQALSSAWVVLPPGKG 91
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 34.7 bits (78), Expect = 0.058
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 69 PHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGTPCP- 127
P GP VT +PS + + T FQ P + GP A VP P P
Sbjct: 478 PTPPGPSVTAT-APSSSSLPTTTSTTAPTFQ-----PVFSSMGPPASVP------LPAPF 525
Query: 128 -AHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSS 186
T P T PLFTG +A A P A S S++ P + + +SS
Sbjct: 526 FKQTTTPATAPTTTAPLFTGLASATSA---VAPITSASPSTDSASKPAFGFGINSVSSSS 582
Query: 187 MLTSPGT 193
+ T+ T
Sbjct: 583 VSTTTST 589
Score = 33.9 bits (76), Expect = 0.099
Identities = 46/195 (23%), Positives = 67/195 (34%), Gaps = 40/195 (20%)
Query: 4 PLIPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMCSCREIPGV 63
P +PPC ++ G T + + P+ S LP L S PG+
Sbjct: 343 PSLPPCPESA-----------GAATTEALSPPKTPSLLPPLG---------LSQSGPPGL 382
Query: 64 ISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPG 123
+ +P S P P+P + Q A S P G
Sbjct: 383 LPSPSFDSKPPTTLLGLIPAPSMVPATDTKAPPTLQAETATKPQATSAPSPAPKQSFLFG 442
Query: 124 TPCPAHVPHSCTMPAGTC------PLFTGAPAAAEAG-LNPGPALRAPTSCSSSTWPKPF 176
T + P S PA + P+FT P + + G PGP++ A SSS
Sbjct: 443 TQNTS--PSSPAAPAASSASPMFKPIFTAPPKSEKEGPTPPGPSVTATAPSSSS------ 494
Query: 177 MTVCLLPTSSMLTSP 191
LPT++ T+P
Sbjct: 495 -----LPTTTSTTAP 504
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 34.3 bits (77), Expect = 0.076
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 21/128 (16%)
Query: 82 PSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGTPCPAHVPHSCTMP---- 137
PSPP S TL AP + P P ++SGPR + L PG P P S T+
Sbjct: 575 PSPP----ASPTLQAPRRPPTPGPDTSVSGPRLTL--ALAPGPPPPPSRSPSSTLSGPDL 628
Query: 138 AGTCPLFTGAP---AAAEAGLNPGPALRAP-----TSCSSSTW---PKPFMTVCLLPTSS 186
AG T P ++G G A P +C + W P P + P +
Sbjct: 629 AGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAP 688
Query: 187 MLTSPGTG 194
+ P TG
Sbjct: 689 LPWPPATG 696
Score = 29.6 bits (65), Expect = 1.9
Identities = 39/159 (24%), Positives = 52/159 (32%), Gaps = 28/159 (17%)
Query: 60 IPGVISTPVPHSAGPQVTRFHSPSPPHISELS-QTLHAPF--------QGSWPRPCHALS 110
+P + + P P A P ++ +PSP + L+ L APF Q + P
Sbjct: 402 LPPLQAPPSP-PASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPV 460
Query: 111 GPRAMVPNQLHPGTPCP-----------------AHVPHSCTMPAGTCPL-FTGAPAAAE 152
P A P+Q P P A P P PL P A
Sbjct: 461 SPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAP 520
Query: 153 AGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSSMLTSP 191
L P P+ +S PF LP S + T P
Sbjct: 521 PALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPP 559
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 34.3 bits (77), Expect = 0.076
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 21/128 (16%)
Query: 82 PSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGTPCPAHVPHSCTMP---- 137
PSPP S TL AP + P P ++SGPR + L PG P P S T+
Sbjct: 536 PSPP----ASPTLQAPRRPPTPGPDTSVSGPRLTL--ALAPGPPPPPSRSPSSTLSGPDL 589
Query: 138 AGTCPLFTGAP---AAAEAGLNPGPALRAP-----TSCSSSTW---PKPFMTVCLLPTSS 186
AG T P ++G G A P +C + W P P + P +
Sbjct: 590 AGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAP 649
Query: 187 MLTSPGTG 194
+ P TG
Sbjct: 650 LPWPPATG 657
Score = 29.6 bits (65), Expect = 1.9
Identities = 39/159 (24%), Positives = 52/159 (32%), Gaps = 28/159 (17%)
Query: 60 IPGVISTPVPHSAGPQVTRFHSPSPPHISELS-QTLHAPF--------QGSWPRPCHALS 110
+P + + P P A P ++ +PSP + L+ L APF Q + P
Sbjct: 363 LPPLQAPPSP-PASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPV 421
Query: 111 GPRAMVPNQLHPGTPCP-----------------AHVPHSCTMPAGTCPL-FTGAPAAAE 152
P A P+Q P P A P P PL P A
Sbjct: 422 SPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAP 481
Query: 153 AGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSSMLTSP 191
L P P+ +S PF LP S + T P
Sbjct: 482 PALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPP 520
>gi|13375926 vacuolar protein sorting 37B [Homo sapiens]
Length = 285
Score = 34.3 bits (77), Expect = 0.076
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 73 GPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPNQLHPGTPCPAHVPH 132
G ++ + +P PP + EL+ T P+ P SGP A+ P ++ P P
Sbjct: 166 GQRLPQALAPLPPRLPELAPTAPLPY------PAPEASGPPAVAPRRIPPPPP------- 212
Query: 133 SCTMPAGTCPL-FTGAPAAAEAGLNPGPALRAP 164
+PAG FT A ++ +A P P L+ P
Sbjct: 213 --PVPAGRLATPFTAAMSSGQA--VPYPGLQCP 241
>gi|33186895 selenoprotein V [Homo sapiens]
Length = 346
Score = 34.3 bits (77), Expect = 0.076
Identities = 47/168 (27%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 35 PRGKSKLPVLPDPRLICRYMCS--CREIPGVISTPVPH---SAGPQVTRFHSPSPPHISE 89
P G S L + P P I + + IP ++ P P + P +P+P +
Sbjct: 54 PAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTP--VPT 111
Query: 90 LSQTLHAPFQGSWPRPCHALSGPRAMVP---NQLHPGTPCPAHVPHSCTMPAGTCPLFTG 146
++TL P + P P L+G RA +P + L P P PA PL
Sbjct: 112 PARTLTPPVRVPAPAPAQLLAGIRAALPVLDSYLAPALPLDPP-----PEPAPELPLL-- 164
Query: 147 APAAAEAGLNPGPALRAPTSCSSSTWPKPFMTVCLLPTSSML--TSPG 192
E P P+L+ S SS P P LPT + L SPG
Sbjct: 165 ----PEEDPEPAPSLKLIPSVSSEAGPAPGP----LPTRTPLAANSPG 204
>gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]
Length = 639
Score = 34.3 bits (77), Expect = 0.076
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 65 STPVPHSAGPQVTRFHSP------SPPHISELSQTLHAPFQGSWPRPCHALSGP------ 112
+TP+ +AGP T F +P +PP S T AP + + P +GP
Sbjct: 94 TTPLWATAGPSSTTFQAPLGPSPTTPPAAERTSTTSQAPTRPA-PTTLSTTTGPAPTTPV 152
Query: 113 RAMVPNQLHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTS 166
VP P TP P +P+ + P A EA +P P + P +
Sbjct: 153 ATTVPAPTTPRTPTP-------DLPSSSNSSVLPTPPATEAPSSPPPGHQWPVA 199
Score = 29.6 bits (65), Expect = 1.9
Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 82 PSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMV-PNQLHPGTPCPAHV-PHSCTMPAG 139
PS P + T AP G P + P A P Q TP A P S T A
Sbjct: 55 PSHPFPRATAPTAQAPRTGP---PRATVHRPLAATSPAQSPETTPLWATAGPSSTTFQAP 111
Query: 140 TCPLFTGAPAAAEAGL-NPGPALRAPTSCSSSTWPKPFMTVCLLPTSSMLTSPGT 193
P T PAA + P APT+ S++T P P T + T T+P T
Sbjct: 112 LGPSPTTPPAAERTSTTSQAPTRPAPTTLSTTTGPAP--TTPVATTVPAPTTPRT 164
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 33.9 bits (76), Expect = 0.099
Identities = 47/170 (27%), Positives = 61/170 (35%), Gaps = 47/170 (27%)
Query: 35 PRGKSKLPVLPDPRLICRYMCSCREIPGV-ISTPVPHSAG-----------PQVTRFHS- 81
P+ K ++ P P + CR G+ + TP H+ G P+ + F S
Sbjct: 195 PKDKQRVAAPPPPER--PRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSE 252
Query: 82 -PSPPHISELSQTLHAPFQGSW-------PRPCHA--------LSGPRAMV--------- 116
PS + S + AP W PRP A LS PRA
Sbjct: 253 VPSTRPLCATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCS 312
Query: 117 -PNQLHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPT 165
P+ H P P P PA P GAP AE+ PGPA P+
Sbjct: 313 GPDSKHRTLPAP---PAPTAWPAAGAP---GAPNPAESRRGPGPAQGPPS 356
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 33.9 bits (76), Expect = 0.099
Identities = 47/170 (27%), Positives = 61/170 (35%), Gaps = 47/170 (27%)
Query: 35 PRGKSKLPVLPDPRLICRYMCSCREIPGV-ISTPVPHSAG-----------PQVTRFHS- 81
P+ K ++ P P + CR G+ + TP H+ G P+ + F S
Sbjct: 195 PKDKQRVAAPPPPER--PRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSE 252
Query: 82 -PSPPHISELSQTLHAPFQGSW-------PRPCHA--------LSGPRAMV--------- 116
PS + S + AP W PRP A LS PRA
Sbjct: 253 VPSTRPLCATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCS 312
Query: 117 -PNQLHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPT 165
P+ H P P P PA P GAP AE+ PGPA P+
Sbjct: 313 GPDSKHRTLPAP---PAPTAWPAAGAP---GAPNPAESRRGPGPAQGPPS 356
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 33.9 bits (76), Expect = 0.099
Identities = 47/170 (27%), Positives = 61/170 (35%), Gaps = 47/170 (27%)
Query: 35 PRGKSKLPVLPDPRLICRYMCSCREIPGV-ISTPVPHSAG-----------PQVTRFHS- 81
P+ K ++ P P + CR G+ + TP H+ G P+ + F S
Sbjct: 195 PKDKQRVAAPPPPER--PRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSE 252
Query: 82 -PSPPHISELSQTLHAPFQGSW-------PRPCHA--------LSGPRAMV--------- 116
PS + S + AP W PRP A LS PRA
Sbjct: 253 VPSTRPLCATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCS 312
Query: 117 -PNQLHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPT 165
P+ H P P P PA P GAP AE+ PGPA P+
Sbjct: 313 GPDSKHRTLPAP---PAPTAWPAAGAP---GAPNPAESRRGPGPAQGPPS 356
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 33.9 bits (76), Expect = 0.099
Identities = 38/136 (27%), Positives = 49/136 (36%), Gaps = 27/136 (19%)
Query: 59 EIPGVISTPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPN 118
+ PG++ P+ PQ P PP ++L P Q P AL P
Sbjct: 987 QAPGLLPPQSPYPYAPQPGVLGQPPPPLHTQL---YPGPAQDPLPAHSGALPFP------ 1037
Query: 119 QLHPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPGPALRAPTSCSSSTWPKPFMT 178
PG P P H P + T P+ P AA +R P+S ST P P +
Sbjct: 1038 --SPGPPQPPHPPLAYGPAPSTRPM---GPQAAPL------TIRGPSSAGQST-PSPHLV 1085
Query: 179 VCLLPTSSMLTSPGTG 194
P SPG G
Sbjct: 1086 PSPAP------SPGPG 1095
Score = 28.9 bits (63), Expect = 3.2
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 104 RPCHALSGPRAMVPNQLHPGTPCPAHVPHSCTMPAGT-CPLFTGAPAAAEAGLNPGPALR 162
RP L P A +P P PA +P S +P+ + PL + P A + P P
Sbjct: 1508 RPPGGLESPVASLPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEP-PVPE 1566
Query: 163 APTS 166
AP+S
Sbjct: 1567 APSS 1570
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 33.9 bits (76), Expect = 0.099
Identities = 43/137 (31%), Positives = 54/137 (39%), Gaps = 34/137 (24%)
Query: 61 PGVISTPVPHSAGPQVTRFH-----SP-SPPHISELSQTLHAPFQ------GSWPRPCHA 108
P + PVPH+ Q H SP PPH S H P Q G P HA
Sbjct: 234 PQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSP-----HPPLQPLTGSAGQPSAPSHA 288
Query: 109 L--------SGPRAMVPNQL--HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPG 158
GP ++ L HPG P P +P + G PL T +PAAA P
Sbjct: 289 QPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQ--GQAPLGT-SPAAA----YPH 341
Query: 159 PALRAPTSCSSSTWPKP 175
+L+ P S S+ +P
Sbjct: 342 TSLQLPASQSALQSQQP 358
Score = 28.5 bits (62), Expect = 4.2
Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 20/128 (15%)
Query: 66 TPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPN------- 118
TP P SA P + +P P + +P P A P A VP+
Sbjct: 194 TPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQA---PTAPVPHTHIQQAP 250
Query: 119 QLHPGTPCPAH-----VPHSCTMPAGTCPLFTGAPAAAEAGLN----PGP-ALRAPTSCS 168
LHP P H PH P AP+ A+ L+ PGP +L+A
Sbjct: 251 ALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQ 310
Query: 169 SSTWPKPF 176
P+PF
Sbjct: 311 HPGPPQPF 318
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.9 bits (76), Expect = 0.099
Identities = 43/137 (31%), Positives = 54/137 (39%), Gaps = 34/137 (24%)
Query: 61 PGVISTPVPHSAGPQVTRFH-----SP-SPPHISELSQTLHAPFQ------GSWPRPCHA 108
P + PVPH+ Q H SP PPH S H P Q G P HA
Sbjct: 788 PQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSP-----HPPLQPLTGSAGQPSAPSHA 842
Query: 109 L--------SGPRAMVPNQL--HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPG 158
GP ++ L HPG P P +P + G PL T +PAAA P
Sbjct: 843 QPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQ--GQAPLGT-SPAAA----YPH 895
Query: 159 PALRAPTSCSSSTWPKP 175
+L+ P S S+ +P
Sbjct: 896 TSLQLPASQSALQSQQP 912
Score = 28.5 bits (62), Expect = 4.2
Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 20/128 (15%)
Query: 66 TPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPN------- 118
TP P SA P + +P P + +P P A P A VP+
Sbjct: 748 TPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQA---PTAPVPHTHIQQAP 804
Query: 119 QLHPGTPCPAH-----VPHSCTMPAGTCPLFTGAPAAAEAGLN----PGP-ALRAPTSCS 168
LHP P H PH P AP+ A+ L+ PGP +L+A
Sbjct: 805 ALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQ 864
Query: 169 SSTWPKPF 176
P+PF
Sbjct: 865 HPGPPQPF 872
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.9 bits (76), Expect = 0.099
Identities = 43/137 (31%), Positives = 54/137 (39%), Gaps = 34/137 (24%)
Query: 61 PGVISTPVPHSAGPQVTRFH-----SP-SPPHISELSQTLHAPFQ------GSWPRPCHA 108
P + PVPH+ Q H SP PPH S H P Q G P HA
Sbjct: 788 PQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSP-----HPPLQPLTGSAGQPSAPSHA 842
Query: 109 L--------SGPRAMVPNQL--HPGTPCPAHVPHSCTMPAGTCPLFTGAPAAAEAGLNPG 158
GP ++ L HPG P P +P + G PL T +PAAA P
Sbjct: 843 QPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQ--GQAPLGT-SPAAA----YPH 895
Query: 159 PALRAPTSCSSSTWPKP 175
+L+ P S S+ +P
Sbjct: 896 TSLQLPASQSALQSQQP 912
Score = 28.5 bits (62), Expect = 4.2
Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 20/128 (15%)
Query: 66 TPVPHSAGPQVTRFHSPSPPHISELSQTLHAPFQGSWPRPCHALSGPRAMVPN------- 118
TP P SA P + +P P + +P P A P A VP+
Sbjct: 748 TPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQA---PTAPVPHTHIQQAP 804
Query: 119 QLHPGTPCPAH-----VPHSCTMPAGTCPLFTGAPAAAEAGLN----PGP-ALRAPTSCS 168
LHP P H PH P AP+ A+ L+ PGP +L+A
Sbjct: 805 ALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQ 864
Query: 169 SSTWPKPF 176
P+PF
Sbjct: 865 HPGPPQPF 872
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,593,837
Number of Sequences: 37866
Number of extensions: 744516
Number of successful extensions: 3310
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 279
Number of HSP's that attempted gapping in prelim test: 3040
Number of HSP's gapped (non-prelim): 536
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.