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Search of human proteins with 169183867
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169183867 PREDICTED: hypothetical protein [Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169183867 PREDICTED: hypothetical protein [Homo sapiens] 407 e-114
gi|169179781 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|169180172 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 37 0.015
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 36 0.026
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 36 0.026
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 35 0.034
gi|34013528 zinc finger protein 512B [Homo sapiens] 35 0.034
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 35 0.057
gi|239756877 PREDICTED: hypothetical protein [Homo sapiens] 34 0.075
gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo ... 34 0.075
gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo ... 34 0.075
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.075
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 34 0.097
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 34 0.097
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 34 0.097
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 33 0.13
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 33 0.17
gi|145199237 transcription elongation factor B polypeptide 3 bin... 32 0.28
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 32 0.37
gi|8922149 downstream neighbor of SON [Homo sapiens] 32 0.37
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 32 0.48
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.48
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 32 0.48
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.48
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 32 0.48
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.48
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 32 0.48
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 32 0.48
gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [H... 31 0.63
>gi|169183867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 407 bits (1046), Expect = e-114
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE
Sbjct: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
Query: 61 YCRECPNASVLIREASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
YCRECPNASVLIREASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL
Sbjct: 61 YCRECPNASVLIREASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
Query: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA
Sbjct: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
Query: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
LDKFGVVFRPLLLAQRNSRLLKV
Sbjct: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
>gi|169179781 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 404 bits (1039), Expect = e-113
Identities = 202/203 (99%), Positives = 202/203 (99%)
Query: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE
Sbjct: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
Query: 61 YCRECPNASVLIREASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
YCRECPNASVLIREASTSGR GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL
Sbjct: 61 YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
Query: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA
Sbjct: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
Query: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
LDKFGVVFRPLLLAQRNSRLLKV
Sbjct: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
>gi|169180172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 404 bits (1039), Expect = e-113
Identities = 202/203 (99%), Positives = 202/203 (99%)
Query: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE
Sbjct: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
Query: 61 YCRECPNASVLIREASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
YCRECPNASVLIREASTSGR GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL
Sbjct: 61 YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
Query: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA
Sbjct: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
Query: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
LDKFGVVFRPLLLAQRNSRLLKV
Sbjct: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 36.6 bits (83), Expect = 0.015
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 58 PVEYCRECPNASVLIREASTSGRRGAGRNAARAHLPAK--KASRGRTRRRRPRAAAAAHA 115
P + C EC + RR R+ +R+H ++ + SR R+R R R+ +A+
Sbjct: 102 PNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPR 161
Query: 116 STRQLSQRCMLSALSPASRPSSSAGQR 142
+R +S R SA SR S G R
Sbjct: 162 RSRSISLRRSRSASLRRSRSGSIKGSR 188
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 35.8 bits (81), Expect = 0.026
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 78 SGRRGAGRNAARAHLPAKKASRGRTRRR----------------RPRAAAAAHASTRQLS 121
SG +G A AH+ ++K SR R+R R R +A+ + ++Q +
Sbjct: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA 172
Query: 122 QRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPR 156
+R S+ S +S SSS+ + S S+ GR +
Sbjct: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 35.8 bits (81), Expect = 0.026
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 78 SGRRGAGRNAARAHLPAKKASRGRTRRR----------------RPRAAAAAHASTRQLS 121
SG +G A AH+ ++K SR R+R R R +A+ + ++Q +
Sbjct: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA 172
Query: 122 QRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPR 156
+R S+ S +S SSS+ + S S+ GR +
Sbjct: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 35.4 bits (80), Expect = 0.034
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 36/148 (24%)
Query: 38 DQYSQETVHSQSWVIWTFRR--PVEYCRECPNASVLIREASTSGRRGAGRNAARA----- 90
D +S + H+ S +++ P+ C E P+ S + EAS + R + AA A
Sbjct: 672 DPHSSQAFHTPSSLLFDPETSPPLSPCPEPPSNSTRLPEASQAHVRVSPGQAAPAMARPR 731
Query: 91 ---HLPAKKASR---------GRTRRRRPRAAAAAH---------ASTRQLSQRCMLSAL 129
H PA +S R ++RPR +A A AS R+ +A
Sbjct: 732 RSRHGPASSSSSSEGEDSAGPARPSQKRPRCSATAQRVAAWTPGPASNRE-------AAT 784
Query: 130 SPASRPSSSAGQRRAGSIES-AGPGRPR 156
+ SR + A R GS +S GPG PR
Sbjct: 785 ASTSRAAYQAAIRGVGSAQSRLGPGPPR 812
>gi|34013528 zinc finger protein 512B [Homo sapiens]
Length = 892
Score = 35.4 bits (80), Expect = 0.034
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 54 TFRRPVEYCRECPNAS-VLIREASTSGRRGAGRNAARAH---------LPAKKASRGRTR 103
T RP+ R P VL+ + R GRN+ + +P K+A R
Sbjct: 307 TVSRPIAISRHTPPCKMVLLTRSENKAPRATGRNSGKKRAADSLDTCPIPPKQA---RPE 363
Query: 104 RRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQ 163
++ +S QLS +LSP SRPS ++++AGP P ++
Sbjct: 364 NGEYGPSSMGQSSAFQLSADTSSGSLSPGSRPSGG-----MEALKAAGPASPPEEDPERT 418
Query: 164 LH 165
H
Sbjct: 419 KH 420
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 34.7 bits (78), Expect = 0.057
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 79 GRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSS 138
G G G A RA A++ GR R R A A+ S + +PASR
Sbjct: 65 GWEGGGLGARRAVTAARRGEWGRARESRSAALASPRVSN---------APTTPASRNPGL 115
Query: 139 AGQRRAGSIESAGPGRPRVNP 159
Q R +AG G R P
Sbjct: 116 RAQERQSGRRAAGGGGARAEP 136
>gi|239756877 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 34.3 bits (77), Expect = 0.075
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 73 REASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPA 132
R S RG R+A +H + + G RRR PR A + R C + SP
Sbjct: 24 RGPSPPRTRGTPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPR 83
Query: 133 SRPSS-SAGQRRAGSIESAGPG 153
R S SA R + PG
Sbjct: 84 RRTSRLSAADTRFSRLLFWAPG 105
>gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo
sapiens]
Length = 140
Score = 34.3 bits (77), Expect = 0.075
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 73 REASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPA 132
R S RG R+A +H + + G RRR PR A + R C + SP
Sbjct: 24 RGPSPPRTRGTPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPR 83
Query: 133 SRPSS-SAGQRRAGSIESAGPG 153
R S SA R + PG
Sbjct: 84 RRTSRLSAADTRFSRLLFWAPG 105
>gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo
sapiens]
Length = 140
Score = 34.3 bits (77), Expect = 0.075
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 73 REASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPA 132
R S RG R+A +H + + G RRR PR A + R C + SP
Sbjct: 24 RGPSPPRTRGTPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPR 83
Query: 133 SRPSS-SAGQRRAGSIESAGPG 153
R S SA R + PG
Sbjct: 84 RRTSRLSAADTRFSRLLFWAPG 105
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.3 bits (77), Expect = 0.075
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 73 REASTSGRRGAGRNAARAHL----PAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSA 128
R S+S R+ R + R P K SR +RR R ++ + A +R LS R LS
Sbjct: 723 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSR-LSLRRSLSG 781
Query: 129 LSPASRPSSSAGQRRAGSIESAGPGRPRVNP 159
SP + S RR+ S S + R P
Sbjct: 782 SSPCPKQKSQTPPRRSRSGSSQPKAKSRTPP 812
Score = 33.1 bits (74), Expect = 0.17
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 77 TSGRRGAGRNAARAHLPAKKASRGRT---RRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
T RRG +R+ PA++ SR RT RR R R A S + R SP
Sbjct: 577 TPARRG----RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVR 632
Query: 134 RPS-SSAGQRRAGSIESAGPGR 154
R S S + RR+G S P R
Sbjct: 633 RRSRSRSPARRSGRSRSRTPAR 654
Score = 32.7 bits (73), Expect = 0.22
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 73 REASTSGRRGAGRNAARAHLPAKKASRGRTR------RRRPRAAAAAHASTRQLSQRCML 126
R + R A R +R+ PA+++ R R+R R R R + +R L +R
Sbjct: 654 RRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRS 713
Query: 127 SALSPASR-PSSSAGQRRAGSIESAGPGRPRVNPVQKQ 163
+ +P R S S+ +R+ S S R +P K+
Sbjct: 714 HSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKK 751
Score = 31.2 bits (69), Expect = 0.63
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 71 LIREASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALS 130
L+R + R R R+ +++ ++ RT +RR R+ ++ ++S R S S
Sbjct: 707 LVRRGRSHSRTPQRRG--RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSS 764
Query: 131 PASRPSSSAGQRRAGSIESAGPGRPRVNPVQK 162
P S+ S RR+ S S P + P ++
Sbjct: 765 PRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRR 796
Score = 29.6 bits (65), Expect = 1.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 85 RNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRA 144
R +R+ K SR RRR R++ R LS+R ++ SP +R + RR+
Sbjct: 1669 RRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKAR-LSRRSRSASSSPETRSRTPPRHRRS 1727
Query: 145 GSIESAGP 152
S+ S P
Sbjct: 1728 PSVSSPEP 1735
Score = 28.5 bits (62), Expect = 4.1
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 83 AGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQR 142
A + A R P + R RR +++++ +S+ S S+ S +S SSS+
Sbjct: 2585 APKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2644
Query: 143 RAGSIESAGPG 153
+ S A PG
Sbjct: 2645 SSSSPSPAKPG 2655
Score = 27.7 bits (60), Expect = 7.0
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 73 REASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTR-QLSQRCMLSALSP 131
R S + RRG R+ + L + S RT +RR R+ +++ + + SQR S SP
Sbjct: 691 RSRSRTPRRGRSRSRS---LVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSP 747
Query: 132 ASRPSSSAGQRRAGSIES 149
+ S RR+ S+ S
Sbjct: 748 EMK-KSRISSRRSRSLSS 764
Score = 27.3 bits (59), Expect = 9.1
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 103 RRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRP 155
+R+R +++++ +S+ S S+ S +S SSS+ + S S P +P
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 33.9 bits (76), Expect = 0.097
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 73 REASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPA 132
R A T+ RRG G + A P ++A+R R ++ A S S R + +PA
Sbjct: 122 RRAVTAARRG-GASRPLAGEPWREAARRRPQQCPQWGRARESRSAALASPRVSNAPTTPA 180
Query: 133 SRPSSSAGQRRAGSIESAGPGRPRVNP 159
SR Q R +AG G R P
Sbjct: 181 SRNPGLRAQERQSGRRAAGGGGARAEP 207
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 33.9 bits (76), Expect = 0.097
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 73 REASTSGRRGAG------RNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCML 126
R S GRR + R+ +R+ LP++K+ + R+R +++H+ ++ S R
Sbjct: 322 RSPSPYGRRRSSSPFLSKRSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRH 381
Query: 127 SALSPASRPSSSA 139
S++SP P +S+
Sbjct: 382 SSISPVRLPLNSS 394
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 33.9 bits (76), Expect = 0.097
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 73 REASTSGRRGAG------RNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCML 126
R S GRR + R+ +R+ LP++K+ + R+R +++H+ ++ S R
Sbjct: 322 RSPSPYGRRRSSSPFLSKRSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRH 381
Query: 127 SALSPASRPSSSA 139
S++SP P +S+
Sbjct: 382 SSISPVRLPLNSS 394
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 33.5 bits (75), Expect = 0.13
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 50 WVIWTFRRPVEYCRECPNASVLIREASTSG-RRGAGRNAARAHLPAKKASRGRTRRRRPR 108
WV+ F+ R A V R +S G RRG GR AA PA+ RRPR
Sbjct: 2 WVLTMFKNKTTCLRGSDTAGVTCRVSSQDGDRRGLGREAAPG-APAEGEKEKGKNSRRPR 60
Query: 109 AAAAAHASTRQLSQRCMLSALSPASRPS 136
+ + R +R PA P+
Sbjct: 61 PTCSRGRTERGRVERGADHQERPAGAPA 88
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 33.1 bits (74), Expect = 0.17
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 82 GAGRNAARAHLPAKKASRGRTRRRRP-RAAAAAHASTR-QLSQRCMLSALSPASRPS--- 136
G GR ARA L KA GR R RP ++ A A A+ R S + + SAL P RP+
Sbjct: 147 GDGRGVARASL-GDKAGAGRAGRGRPAQSPAEADAAARASKSLKLLSSALPPHLRPAAKT 205
Query: 137 ----------SSAGQRRAGSIESAGPGRPRVNP 159
S R G GP RP P
Sbjct: 206 RAVAGPTAKESPPALRTVGDGPRPGPKRPDPAP 238
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 32.3 bits (72), Expect = 0.28
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 83 AGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQR 142
A + +A P +KA R +++P +A S + R PA RPS ++G
Sbjct: 413 ADKKGPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDR-------PARRPSPTSGDS 465
Query: 143 RAGSIESAGPGRPRVNPVQK 162
R + GP RP P +K
Sbjct: 466 RPAA--GRGPPRPLQLPDRK 483
>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
Length = 951
Score = 32.0 bits (71), Expect = 0.37
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Query: 73 REASTSGRRGAGRNAARAHLPAKK--ASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALS 130
R A + RR R+ A+ ++ ASR RTR R P S + + ++S
Sbjct: 811 RRAHSPERRREERSVPTAYRVSRSPGASRKRTRSRSPHEKKKKRRSRSRTKSKARSQSVS 870
Query: 131 P----ASRPSS----SAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDALD 182
P A RP++ SA +ES G + R V ++ I + S +
Sbjct: 871 PSKQAAPRPAAPAAHSAHSASVSPVESRGSSQERSRGVSQEKEAQISSAIVSSVQSKITQ 930
Query: 183 KFGVVFRPLLLAQRN 197
R +L A +N
Sbjct: 931 DLMAKVRAMLAASKN 945
Score = 29.3 bits (64), Expect = 2.4
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 76 STSGRRGAGRNAARAHLPA--KKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
S+S R + A+ LP+ + R R+R R PR A H+ R+ +R + +A +
Sbjct: 776 SSSKSRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRA--HSPERRREERSVPTAYRVSR 833
Query: 134 RPSSSAGQRRAGS 146
P +S + R+ S
Sbjct: 834 SPGASRKRTRSRS 846
>gi|8922149 downstream neighbor of SON [Homo sapiens]
Length = 566
Score = 32.0 bits (71), Expect = 0.37
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 101 RTRRRRPRAAAAAHASTRQLSQ----RCMLSALSPASRPSSSAGQRRAGSIESAGPGRPR 156
R RR+R R+ AA + R+L++ R L A P RP +AG R GS GP R
Sbjct: 20 RLRRKRARSRGAAASPPRELTEPAARRAALVAGLPL-RPFPAAGGRGGGS--GGGPAAAR 76
Query: 157 VNP 159
NP
Sbjct: 77 RNP 79
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 31.6 bits (70), Expect = 0.48
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 16/110 (14%)
Query: 56 RRPVEYCRECPNASVLIREASTSGR---RGAGRNAARAHLPAKKASRGRTRRRRPRAAAA 112
RRP L R GR GAGR RA P AS RP AAA
Sbjct: 1209 RRPSFSSHHLMPCDTLARRRLARGRPDGEGAGRGGPRAPEPPGSASSSSQESLRPPAAAL 1268
Query: 113 AHASTRQLSQRCMLSA-------------LSPASRPSSSAGQRRAGSIES 149
A +R + R L LSP +R S+ +R ++S
Sbjct: 1269 ASRPSRMEALRLRLRGTADDMLAVRLRRPLSPETRRRRSSWRRHTVVVQS 1318
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.48
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 81 RGAGRNAARAHLPAKKAS----RGRTRRRRPRAAAAAHASTRQLSQ 122
RG GR+A A A A + RRRRPRAAAA T Q S+
Sbjct: 154 RGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGRTHQRSR 199
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 31.6 bits (70), Expect = 0.48
Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 29/165 (17%)
Query: 20 AAAKSGLHD-SPAFLLEMGDQYSQETVHSQSWVIWTFRRPVEYCRECPNASV-------- 70
AAA+ G + SP L++ + E S+ + T R +E C C V
Sbjct: 76 AAAEGGRREQSPLLHLDLFNFDCPEAEGSR--YVLTSPRSLEACARCAVKPVELLPRALA 133
Query: 71 -LIREAS------TSGRRGAGRNAARAHLPAKKASRGRTRRRR---------PRAAAAAH 114
L+REA +G A RA L +A R R R P AAAAA
Sbjct: 134 DLVREAPGRSMRVATGLYEAYEAERRAKLQQCRAERERIMREEKRRLFTPLSPAAAAAAA 193
Query: 115 ASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNP 159
A+ S+ S AS P+S A RA S P R P
Sbjct: 194 AAAASAPSAGSSSSCSSASLPASPA--PRAARKASPSPSSARTQP 236
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.48
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 81 RGAGRNAARAHLPAKKAS----RGRTRRRRPRAAAAAHASTRQLSQ 122
RG GR+A A A A + RRRRPRAAAA T Q S+
Sbjct: 154 RGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGRTHQRSR 199
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 31.6 bits (70), Expect = 0.48
Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 29/165 (17%)
Query: 20 AAAKSGLHD-SPAFLLEMGDQYSQETVHSQSWVIWTFRRPVEYCRECPNASV-------- 70
AAA+ G + SP L++ + E S+ + T R +E C C V
Sbjct: 76 AAAEGGRREQSPLLHLDLFNFDCPEAEGSR--YVLTSPRSLEACARCAVKPVELLPRALA 133
Query: 71 -LIREAS------TSGRRGAGRNAARAHLPAKKASRGRTRRRR---------PRAAAAAH 114
L+REA +G A RA L +A R R R P AAAAA
Sbjct: 134 DLVREAPGRSMRVATGLYEAYEAERRAKLQQCRAERERIMREEKRRLFTPLSPAAAAAAA 193
Query: 115 ASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNP 159
A+ S+ S AS P+S A RA S P R P
Sbjct: 194 AAAASAPSAGSSSSCSSASLPASPA--PRAARKASPSPSSARTQP 236
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.48
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 81 RGAGRNAARAHLPAKKAS----RGRTRRRRPRAAAAAHASTRQLSQ 122
RG GR+A A A A + RRRRPRAAAA T Q S+
Sbjct: 154 RGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGRTHQRSR 199
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 31.6 bits (70), Expect = 0.48
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 78 SGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSS 137
SG +G A AH+ ++K SR R+R R + S + S+ C SA + R +S
Sbjct: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNC--SASTSQGRKAS 170
Query: 138 SA 139
+A
Sbjct: 171 TA 172
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 31.6 bits (70), Expect = 0.48
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 78 SGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSS 137
SG +G A AH+ ++K SR R+R R + S + S+ C SA + R +S
Sbjct: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNC--SASTSQGRKAS 170
Query: 138 SA 139
+A
Sbjct: 171 TA 172
>gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [Homo
sapiens]
Length = 845
Score = 31.2 bits (69), Expect = 0.63
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 64 ECPNASVLIREASTSGRRGAGR-------NAARAHLPAKKASRGRTRRRRPRAAAAAHAS 116
+ P L RE T A R ++ H P+ +++RGR R + +
Sbjct: 95 DTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPA 154
Query: 117 TRQLSQRCMLSALSPASRPSSS 138
TR L +R SA +P P SS
Sbjct: 155 TRSLRRRATASAGTPWPSPPSS 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,727,614
Number of Sequences: 37866
Number of extensions: 337114
Number of successful extensions: 2350
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 2110
Number of HSP's gapped (non-prelim): 340
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.