Guide to the Human Genome
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Name: LOC728297 Sequence: fasta or formatted (239aa) NCBI GI: 169178703
Description:

PREDICTED: similar to hCG2039164

Referenced in:

G-Protein-coupled Receptors

Other entries for this name:
alt prot [239aa] PREDICTED: similar to hCG2039164
alt prot [239aa] PREDICTED: similar to hCG2039164
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         14           2
 C cysteine            3.8          9           1
 D aspartate           2.1          5           1
 E glutamate           6.7         16           4
 F phenylalanine       5.9         14           1
 G glycine            10.9         26           2
 H histidine           2.5          6           1
 I isoleucine          5.0         12           1
 K lysine              3.3          8           1
 L leucine            11.3         27           2
 M methionine          2.1          5           1
 N asparagine          3.3          8           1
 P proline             6.3         15           1
 Q glutamine           4.2         10           1
 R arginine            3.8          9           2
 S serine              7.9         19           1
 T threonine           4.2         10           2
 V valine              7.9         19           2
 W tryptophan          2.1          5           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2039164 
LOC728297             0.989   PREDICTED: similar to hCG2039164 
LOC728683             0.923   PREDICTED: similar to hCG2039164 
LOC728297             0.917   PREDICTED: similar to hCG2039164 
PTGER4                0.126   prostaglandin E receptor 4, subtype EP4 
GPR183                0.028   EBV-induced G protein-coupled receptor 2 
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 2 [H...
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 5 [H...
KISS1R                0.026   G protein-coupled receptor 54 
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 4 [H...
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 8 [H...
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 7 [H...
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 6 [H...
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 4 [H...
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 3 [H...
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 1 [H...
PTGER3                0.026   prostaglandin E receptor 3, subtype EP3 isoform 4 [...
PTGER2                0.017   prostaglandin E receptor 2 (subtype EP2), 53kDa [Hom...
HTR4                  0.015   serotonin 5-HT4 receptor isoform n 
HTR4                  0.015   serotonin 5-HT4 receptor isoform i 
HTR4                  0.015   serotonin 5-HT4 receptor isoform hb 
HTR4                  0.015   serotonin 5-HT4 receptor isoform d 
HTR4                  0.015   serotonin 5-HT4 receptor isoform a 
HTR4                  0.015   serotonin 5-HT4 receptor isoform g 
HTR4                  0.015   serotonin 5-HT4 receptor isoform b 
ADRA1A                0.015   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.015   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.015   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.015   alpha-1A-adrenergic receptor isoform 3 
UTS2R                 0.015   urotensin 2 receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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