Search of human proteins with 169173235

Search of human proteins with 169173235

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169173235 PREDICTED: hypothetical protein [Homo sapiens]
         (331 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169173235 PREDICTED: hypothetical protein [Homo sapiens]           690   0.0  
gi|239753660 PREDICTED: hypothetical protein [Homo sapiens]            86   6e-17
gi|239748319 PREDICTED: hypothetical protein [Homo sapiens]            86   6e-17
gi|239755083 PREDICTED: similar to hCG1984907 [Homo sapiens]           68   1e-11
gi|239756009 PREDICTED: similar to transmembrane phosphoinositid...    41   0.001
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          34   0.16 
gi|251823730 cat eye syndrome chromosome region, candidate 6 iso...    33   0.27 
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof...    33   0.27 
gi|187828635 NOL1/NOP2/Sun domain family, member 7 [Homo sapiens]      32   0.78 
gi|139394604 bromo adjacent homology domain containing 1 [Homo s...    32   0.78 
gi|116805334 Ras-induced senescence 1 [Homo sapiens]                   32   1.0  
gi|110431370 espin [Homo sapiens]                                      31   1.3  
gi|239751818 PREDICTED: hypothetical protein XP_002348008 [Homo ...    31   1.7  
gi|239746309 PREDICTED: hypothetical protein XP_002343728 [Homo ...    31   1.7  
gi|33636722 plasticity related gene 1 [Homo sapiens]                   31   1.7  
gi|239750117 PREDICTED: hypothetical protein [Homo sapiens]            30   3.9  
gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo ...    30   3.9  
gi|19923493 pleckstrin homology domain containing, family A memb...    30   3.9  
gi|169213798 PREDICTED: zinc finger protein 728 [Homo sapiens]         29   5.1  
gi|169214227 PREDICTED: zinc finger protein 728 [Homo sapiens]         29   5.1  
gi|169213571 PREDICTED: zinc finger protein 728 [Homo sapiens]         29   5.1  
gi|169171308 PREDICTED: hypothetical protein [Homo sapiens]            29   6.6  
gi|89025853 PREDICTED: hypothetical protein [Homo sapiens]             29   6.6  
gi|42657886 PREDICTED: hypothetical protein [Homo sapiens]             29   6.6  
gi|42658266 PREDICTED: hypothetical protein [Homo sapiens]             29   6.6  
gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform ...    29   6.6  
gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform ...    29   6.6  
gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform ...    29   6.6  
gi|148664218 POU transcription factor [Homo sapiens]                   28   8.7  
gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens]      28   8.7  

>gi|169173235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score =  690 bits (1780), Expect = 0.0
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MGFWCGCPFCLLVFLLTVRTHSCRSVGVCWRFTPDPVCLGISSGGCRTADTGEQQMLLPD 60
           MGFWCGCPFCLLVFLLTVRTHSCRSVGVCWRFTPDPVCLGISSGGCRTADTGEQQMLLPD
Sbjct: 1   MGFWCGCPFCLLVFLLTVRTHSCRSVGVCWRFTPDPVCLGISSGGCRTADTGEQQMLLPD 60

Query: 61  RSSGSFVSEEYLAVGGVSLPLLGGASQLGYSGVRDALEEAVCPFSDLQLHAGRTTTLFKA 120
           RSSGSFVSEEYLAVGGVSLPLLGGASQLGYSGVRDALEEAVCPFSDLQLHAGRTTTLFKA
Sbjct: 61  RSSGSFVSEEYLAVGGVSLPLLGGASQLGYSGVRDALEEAVCPFSDLQLHAGRTTTLFKA 120

Query: 121 VRQGHLSLQRILLPFVWLFPAPRGGVYRGRQASLSCGWLHPVRASWPLCLPTQALAMAGV 180
           VRQGHLSLQRILLPFVWLFPAPRGGVYRGRQASLSCGWLHPVRASWPLCLPTQALAMAGV
Sbjct: 121 VRQGHLSLQRILLPFVWLFPAPRGGVYRGRQASLSCGWLHPVRASWPLCLPTQALAMAGV 180

Query: 181 PPPASLPPGSLISNCCASNEGGSVGIQPSKPCVGYNLLVCRLLRPLEKCSIRVGVTRFSR 240
           PPPASLPPGSLISNCCASNEGGSVGIQPSKPCVGYNLLVCRLLRPLEKCSIRVGVTRFSR
Sbjct: 181 PPPASLPPGSLISNCCASNEGGSVGIQPSKPCVGYNLLVCRLLRPLEKCSIRVGVTRFSR 240

Query: 241 CRLSPLSLTRKGNSLTLCTSQVRQCLSLLWLMLGALHPLSCTHFPTFPSEISPVPQLEMQ 300
           CRLSPLSLTRKGNSLTLCTSQVRQCLSLLWLMLGALHPLSCTHFPTFPSEISPVPQLEMQ
Sbjct: 241 CRLSPLSLTRKGNSLTLCTSQVRQCLSLLWLMLGALHPLSCTHFPTFPSEISPVPQLEMQ 300

Query: 301 KSPVFCVAHAGSSRLELFLFGHLGSTLSCRS 331
           KSPVFCVAHAGSSRLELFLFGHLGSTLSCRS
Sbjct: 301 KSPVFCVAHAGSSRLELFLFGHLGSTLSCRS 331


>gi|239753660 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 111

 Score = 85.5 bits (210), Expect = 6e-17
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query: 277 HPLSCTHFPTFPSEISPVPQLEMQKSPVFCVAHAGSSRLELFLFGHLGST 326
           HPL+C H    PSE++PVPQ+EMQKSPVFCVAHAGS R ELFLFGHLGS+
Sbjct: 13  HPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSS 62


>gi|239748319 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 111

 Score = 85.5 bits (210), Expect = 6e-17
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query: 277 HPLSCTHFPTFPSEISPVPQLEMQKSPVFCVAHAGSSRLELFLFGHLGST 326
           HPL+C H    PSE++PVPQ+EMQKSPVFCVAHAGS R ELFLFGHLGS+
Sbjct: 13  HPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSS 62


>gi|239755083 PREDICTED: similar to hCG1984907 [Homo sapiens]
          Length = 103

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 277 HPLSCTHFPTFPSEISPVPQLEMQKSPVFCVAHAGSSRLEL 317
           HPL+C H    PSE++PVPQ+EMQKSPVFCVAHAGS R EL
Sbjct: 13  HPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53


>gi|239756009 PREDICTED: similar to transmembrane phosphoinositide
           3-phosphatase and tensin homolog 2, partial [Homo
           sapiens]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/27 (70%), Positives = 22/27 (81%)

Query: 185 SLPPGSLISNCCASNEGGSVGIQPSKP 211
           SL P SLIS+CCASN+  SVG+ PSKP
Sbjct: 1   SLLPCSLISDCCASNQRDSVGVGPSKP 27


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 38/131 (29%), Positives = 51/131 (38%), Gaps = 22/131 (16%)

Query: 98   EEAVCPFSDLQLHAGRTTTLFKAVRQGHLSLQRILLPFVWLFPAP------RGGVYRGRQ 151
            EEA+    +  LH  RT T      + H SL    LP    FP P      +   +    
Sbjct: 3541 EEALSQHLESALHKHRTITRAARNAKEHPSL----LPHSACFPDPSTASTSQSAAHSNDS 3596

Query: 152  ------ASLSCGWLHPVRASWPLCLPTQALAMAGVPPPASLPPGSLISNCCASNEGGSVG 205
                  A+ S    H  R SWP     Q ++ A    P S PP S  S+   S+   + G
Sbjct: 3597 PPPPSAAAPSSASPHASRKSWP-----QVVSRASAAKPPSFPPLS-SSSTVTSSSCSTSG 3650

Query: 206  IQPSKPCVGYN 216
            +QPS P   Y+
Sbjct: 3651 VQPSMPTDDYS 3661


>gi|251823730 cat eye syndrome chromosome region, candidate 6
           isoform b [Homo sapiens]
          Length = 223

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 12/64 (18%)

Query: 148 RGRQASLSCGWLHPVRASWPLCLPTQALAMAGVPPPASLPP------GSLISNCCASNEG 201
           RG +A   C W    RAS     P++A    G PP A  PP      GS + +C + NEG
Sbjct: 155 RGLEALEGC-WDRGNRAS-----PSRARGGYGAPPSAPPPPPPPPQGGSQLGHCISENEG 208

Query: 202 GSVG 205
           G+ G
Sbjct: 209 GAHG 212


>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
           a [Homo sapiens]
          Length = 578

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 12/64 (18%)

Query: 148 RGRQASLSCGWLHPVRASWPLCLPTQALAMAGVPPPASLPP------GSLISNCCASNEG 201
           RG +A   C W    RAS     P++A    G PP A  PP      GS + +C + NEG
Sbjct: 510 RGLEALEGC-WDRGNRAS-----PSRARGGYGAPPSAPPPPPPPPQGGSQLGHCISENEG 563

Query: 202 GSVG 205
           G+ G
Sbjct: 564 GAHG 567


>gi|187828635 NOL1/NOP2/Sun domain family, member 7 [Homo sapiens]
          Length = 718

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 131 ILLPFVWL-FPAPRGGVYRGRQASLSCGWLHPVRASWPLCLPTQALAMAGVPPPASLPPG 189
           I+LP V++ F +P+G   R     L C W+ P +A  P CLPT +L+     P    P  
Sbjct: 651 IVLPPVFMPFSSPQGIRSRMPTQHLYCRWVAP-KALVPTCLPTHSLSRKEEKPKDDTPSS 709

Query: 190 SL 191
            L
Sbjct: 710 LL 711


>gi|139394604 bromo adjacent homology domain containing 1 [Homo
           sapiens]
          Length = 780

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 234 GVTRFSRCRLSPLSLTRKGNSLTLCTSQV----RQCLSLLWL---MLGALHPLSCTH--- 283
           GV  +S C + PLS+T  G +   C  ++      C SL  L   +  A HP S  H   
Sbjct: 445 GVNGYSICGVLPLSVTHAGTTCGGCPYKMPFAAEGCRSLGQLEFPLPEAGHPASPAHPLL 504

Query: 284 ---FPTFPSEISPVPQLEMQKSPVFCVAHA 310
               P+ P    PVP L+   S    VA A
Sbjct: 505 GCPVPSVPPAAEPVPHLQTPTSEPQTVARA 534


>gi|116805334 Ras-induced senescence 1 [Homo sapiens]
          Length = 300

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 144 GGVYRGRQASLSCGWLHPVRAS--WPLCLPTQALAMAGVPP-----PASLPPGSL 191
           GG  +  +  + CGW+   R     P   P+ A A AG P      PA+ PPG L
Sbjct: 134 GGAQQDLRLCVGCGWVRGRRTGRLRPAAAPSAAAATAGAPTALPAYPAAEPPGPL 188


>gi|110431370 espin [Homo sapiens]
          Length = 854

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 161 PVRASWPLCLPTQALAMAG--VPPPASLPPGSLISNCCASNEGGSVGIQPSKP 211
           P RA  P   P    ++ G   PP A+L PG+ + N CA++   S  + P  P
Sbjct: 548 PARAGCPRLGPAARGSLEGPSAPPQAALLPGNHVPNGCAADPKASRELPPPPP 600


>gi|239751818 PREDICTED: hypothetical protein XP_002348008 [Homo
           sapiens]
          Length = 195

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 32/90 (35%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 29  CWRFTPDPVCLGISSGGCRTADTGEQQMLLPDRSSGSFVSEEYLAVGGVSLPLLGGASQL 88
           CWR       LG      +  DT     L+P +S G  +  E   V GV LPLL  A QL
Sbjct: 30  CWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKSPGPVLPGE--GVQGVVLPLL-RALQL 86

Query: 89  G-----YSGVRDALEEAVCPFSDLQLHAGR 113
           G       GV   LEE   P S  +   GR
Sbjct: 87  GPPKGANLGVGGDLEEGESPASWGECGPGR 116


>gi|239746309 PREDICTED: hypothetical protein XP_002343728 [Homo
           sapiens]
          Length = 195

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 32/90 (35%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 29  CWRFTPDPVCLGISSGGCRTADTGEQQMLLPDRSSGSFVSEEYLAVGGVSLPLLGGASQL 88
           CWR       LG      +  DT     L+P +S G  +  E   V GV LPLL  A QL
Sbjct: 30  CWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKSPGPVLPGE--GVQGVVLPLL-RALQL 86

Query: 89  G-----YSGVRDALEEAVCPFSDLQLHAGR 113
           G       GV   LEE   P S  +   GR
Sbjct: 87  GPPKGANLGVGGDLEEGESPASWGECGPGR 116


>gi|33636722 plasticity related gene 1 [Homo sapiens]
          Length = 763

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 153 SLSCGWLHPVRASWPLCLPTQALAMAGVPPPASLPPGSLISNCCASNEGGSVGIQPSKPC 212
           SLS  ++ P + + P  L   +LA AG  P  ++  G  I  CC S     VG++P+   
Sbjct: 107 SLSMPYIEPTQEAIPF-LMLLSLAFAG--PAITIMVGEGILYCCLSKRRNGVGLEPNINA 163

Query: 213 VGYNLLVCRLLRPLEKCSIRVGVTRFSRC 241
            G     C     L +    VGV  F  C
Sbjct: 164 GG-----CNFNSFLRRAVRFVGVHVFGLC 187


>gi|239750117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 12/96 (12%)

Query: 174 ALAMAGVPPPASLPP---GSLISNCCASNEGGSVGIQ-----PSKPCVGYNLLVCRLLRP 225
           +L +   PPPA++PP    +L++  C S+  G VG+      P  P +   L  CR    
Sbjct: 61  SLPVLSCPPPATIPPRPEPTLLTGLCPSSPHG-VGVWGILAFPRPPVLSLPLESCR--DS 117

Query: 226 LEKCSIRVGV-TRFSRCRLSPLSLTRKGNSLTLCTS 260
           L     RVGV    +R  L    L  +G  ++L T+
Sbjct: 118 LGTMQARVGVGAHIARWCLRICLLACRGGPVSLATA 153


>gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo
           sapiens]
          Length = 228

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 21/96 (21%)

Query: 174 ALAMAGVPPPASLPP---GSLISNCCASNEGGSVGIQ-----PSKPCVGYNLLVCRLLRP 225
           +L +   PPPA++PP    +L++  C S+  G VG+      P  P          L  P
Sbjct: 61  SLPVLSCPPPATIPPRPEPTLLTGLCPSSPHG-VGVWGILAFPRPPV---------LSLP 110

Query: 226 LEKCSIRVGVTRFSRCRLSPLSLTRKGNSLTLCTSQ 261
           LE C   +G     + R+   SL R   S T+ + Q
Sbjct: 111 LESCRDSLGT---MQARVGAASLRRTPTSDTMASGQ 143


>gi|19923493 pleckstrin homology domain containing, family A member
           5 isoform 1 [Homo sapiens]
          Length = 1116

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 126 LSLQRILLPFVWLFPAPRGG-VYRGRQASLSCGWLHPV 162
           L+L+ I LP  W +   RGG V+   + + S  WLHPV
Sbjct: 5   LNLEWISLPRSWTYGITRGGRVFFINEEAKSTTWLHPV 42


>gi|169213798 PREDICTED: zinc finger protein 728 [Homo sapiens]
          Length = 687

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 222 LLRPLEKCS-----IRVGVTRFSRCRLSPLSLTRKGNSLTLCTSQVRQC 265
           +LR  EKC      +++G T    C++      +   SLT   S+V QC
Sbjct: 99  ILRRYEKCGHENLQLKIGCTNVDECKVHKKGYNKLNQSLTTTQSKVFQC 147


>gi|169214227 PREDICTED: zinc finger protein 728 [Homo sapiens]
          Length = 687

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 222 LLRPLEKCS-----IRVGVTRFSRCRLSPLSLTRKGNSLTLCTSQVRQC 265
           +LR  EKC      +++G T    C++      +   SLT   S+V QC
Sbjct: 99  ILRRYEKCGHENLQLKIGCTNVDECKVHKKGYNKLNQSLTTTQSKVFQC 147


>gi|169213571 PREDICTED: zinc finger protein 728 [Homo sapiens]
          Length = 687

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 222 LLRPLEKCS-----IRVGVTRFSRCRLSPLSLTRKGNSLTLCTSQVRQC 265
           +LR  EKC      +++G T    C++      +   SLT   S+V QC
Sbjct: 99  ILRRYEKCGHENLQLKIGCTNVDECKVHKKGYNKLNQSLTTTQSKVFQC 147


>gi|169171308 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 161 PVRASWPLCLPTQALAMAGVPPPASLPPGSLISNCCASNEGGSVGIQPSKP 211
           P   + P C PT + A+AG PPP S P  +      AS+EG      P  P
Sbjct: 15  PFARAVPACPPTCSPALAG-PPPPSFPERA------ASSEGSPTHSPPHPP 58


>gi|89025853 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 161 PVRASWPLCLPTQALAMAGVPPPASLPPGSLISNCCASNEGGSVGIQPSKP 211
           P   + P C PT + A+AG PPP S P  +      AS+EG      P  P
Sbjct: 15  PFARAVPACPPTCSPALAG-PPPPSFPERA------ASSEGSPTHSPPHPP 58


>gi|42657886 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 161 PVRASWPLCLPTQALAMAGVPPPASLPPGSLISNCCASNEGGSVGIQPSKP 211
           P   + P C PT + A+AG PPP S P  +      AS+EG      P  P
Sbjct: 15  PFARAVPACPPTCSPALAG-PPPPSFPERA------ASSEGSPTHSPPHPP 58


>gi|42658266 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 161 PVRASWPLCLPTQALAMAGVPPPASLPPGSLISNCCASNEGGSVGIQPSKP 211
           P   + P C PT + A+AG PPP S P  +      AS+EG      P  P
Sbjct: 15  PFARAVPACPPTCSPALAG-PPPPSFPERA------ASSEGSPTHSPPHPP 58


>gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform 3
           [Homo sapiens]
          Length = 462

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)

Query: 171 PTQALAMAGVPPPASLPPGSLISNCCASNEGGSVGIQPSKPCVGYNLLV 219
           P  AL + G+PPP   PP  L S         S G+ P  P + Y  L+
Sbjct: 219 PPSALPLMGLPPPPIPPPPPLSS---------SFGVPPPPPGIHYQHLM 258


>gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform 2
           [Homo sapiens]
          Length = 471

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)

Query: 171 PTQALAMAGVPPPASLPPGSLISNCCASNEGGSVGIQPSKPCVGYNLLV 219
           P  AL + G+PPP   PP  L S         S G+ P  P + Y  L+
Sbjct: 228 PPSALPLMGLPPPPIPPPPPLSS---------SFGVPPPPPGIHYQHLM 267


>gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform 1
           [Homo sapiens]
          Length = 514

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)

Query: 171 PTQALAMAGVPPPASLPPGSLISNCCASNEGGSVGIQPSKPCVGYNLLV 219
           P  AL + G+PPP   PP  L S         S G+ P  P + Y  L+
Sbjct: 271 PPSALPLMGLPPPPIPPPPPLSS---------SFGVPPPPPGIHYQHLM 310


>gi|148664218 POU transcription factor [Homo sapiens]
          Length = 436

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 148 RGRQASLSCGWLHPVRA---SWPLCLPTQALAMAGVPPPASLPPGSLISNCCASNEGGSV 204
           R ++  ++C    P++    +  L  P+ +L    VPP  S  PG++ S+C   N     
Sbjct: 333 RQKEKRINCPVATPIKPPVYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNS--- 389

Query: 205 GIQPSKPCVG 214
             +PS P  G
Sbjct: 390 --RPSSPGSG 397


>gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens]
          Length = 223

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 13/58 (22%)

Query: 164 ASWPLCLPTQALAMAGVPP--PAS--------LPPGSLISNCCASNEGGSVGIQPSKP 211
           ASWP C P     M  +PP  PAS          P    S+   ++ G S+GIQP  P
Sbjct: 140 ASWPSCTPGH---MPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTP 194


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,923,714
Number of Sequences: 37866
Number of extensions: 736396
Number of successful extensions: 2917
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2906
Number of HSP's gapped (non-prelim): 35
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.