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Search of human proteins with 169172306
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169172306 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
(505 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169172306 PREDICTED: hypothetical protein LOC441239 [Homo sap... 1029 0.0
gi|169170482 PREDICTED: hypothetical protein LOC441239 [Homo sap... 964 0.0
gi|169171788 PREDICTED: hypothetical protein LOC441239 [Homo sap... 613 e-175
gi|113418608 PREDICTED: hypothetical protein LOC441239 [Homo sap... 611 e-175
gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens] 45 1e-04
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 44 3e-04
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 44 3e-04
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 44 3e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 44 4e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 43 6e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 43 6e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 43 6e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 42 0.001
gi|19924097 synapsin I isoform Ib [Homo sapiens] 42 0.002
gi|226437606 ankyrin repeat domain 34C [Homo sapiens] 41 0.003
gi|239756364 PREDICTED: ankyrin repeat domain 34C [Homo sapiens] 41 0.003
gi|239750889 PREDICTED: ankyrin repeat domain 34C [Homo sapiens] 41 0.003
gi|239745252 PREDICTED: ankyrin repeat domain 34C [Homo sapiens] 41 0.003
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 40 0.005
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 40 0.006
gi|239750815 PREDICTED: StAR-related lipid transfer (START) doma... 40 0.006
gi|239745175 PREDICTED: StAR-related lipid transfer (START) doma... 40 0.006
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 40 0.006
gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo ... 39 0.008
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 39 0.011
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 39 0.011
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 39 0.011
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 37 0.042
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 37 0.042
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 37 0.042
>gi|169172306 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
Length = 505
Score = 1029 bits (2661), Expect = 0.0
Identities = 505/505 (100%), Positives = 505/505 (100%)
Query: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR
Sbjct: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
Query: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC
Sbjct: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH
Sbjct: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
Query: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL
Sbjct: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
Query: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV
Sbjct: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
Query: 301 WMQVLDSHKGEEPVTHPTTPLKWVKGNPGAGHPAQKKRSKSPTPTHVHKGPLVHQEGETC 360
WMQVLDSHKGEEPVTHPTTPLKWVKGNPGAGHPAQKKRSKSPTPTHVHKGPLVHQEGETC
Sbjct: 301 WMQVLDSHKGEEPVTHPTTPLKWVKGNPGAGHPAQKKRSKSPTPTHVHKGPLVHQEGETC 360
Query: 361 HQATVAYTDTRAKAHRSRQVSRDWRMRIREAGAGARLSGLSGLASSGRLISRVPLEEKAI 420
HQATVAYTDTRAKAHRSRQVSRDWRMRIREAGAGARLSGLSGLASSGRLISRVPLEEKAI
Sbjct: 361 HQATVAYTDTRAKAHRSRQVSRDWRMRIREAGAGARLSGLSGLASSGRLISRVPLEEKAI 420
Query: 421 RECEVGAGNFSLDSIPERVCVQESGPREKGIQSGELLRDLRVMESYLRPQRRVSVEDLSQ 480
RECEVGAGNFSLDSIPERVCVQESGPREKGIQSGELLRDLRVMESYLRPQRRVSVEDLSQ
Sbjct: 421 RECEVGAGNFSLDSIPERVCVQESGPREKGIQSGELLRDLRVMESYLRPQRRVSVEDLSQ 480
Query: 481 LPSPQNVTVFRRKHSYNGPHEGRPL 505
LPSPQNVTVFRRKHSYNGPHEGRPL
Sbjct: 481 LPSPQNVTVFRRKHSYNGPHEGRPL 505
>gi|169170482 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
Length = 542
Score = 964 bits (2493), Expect = 0.0
Identities = 478/503 (95%), Positives = 482/503 (95%)
Query: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR
Sbjct: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
Query: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
SEETVEDRVAPGAARNQGDLEE+GNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC
Sbjct: 61 SEETVEDRVAPGAARNQGDLEETGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRS TSH
Sbjct: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSRTSH 180
Query: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL
Sbjct: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
Query: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV
Sbjct: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
Query: 301 WMQVLDSHKGEEPVTHPTTPLKWVKGNPGAGHPAQKKRSKSPTPTHVHKGPLVHQEGETC 360
WMQVLDSHKGEEPVTHPTTPLKWVKGNPGAGHPAQKKRSKSPTPT VHKGPLVHQEGETC
Sbjct: 301 WMQVLDSHKGEEPVTHPTTPLKWVKGNPGAGHPAQKKRSKSPTPTRVHKGPLVHQEGETC 360
Query: 361 HQATVAYTDTRAKAHRSRQVSRDWRMRIREAGAGARLSGLSGLASSGRLISRVPLEEKAI 420
HQATVAYTDTRAKAHRSRQVSRDWRMRIREAGAGARLSGLSGLASSGRLISRVPLEEKAI
Sbjct: 361 HQATVAYTDTRAKAHRSRQVSRDWRMRIREAGAGARLSGLSGLASSGRLISRVPLEEKAI 420
Query: 421 RECEVGAGNFSLDSIPERVCVQESGPREKGIQSGELLRDLRVMESYLRPQRRVSVEDLSQ 480
RECEVGAGNFSLDSIPERVCVQESGPREKGIQSGELLRDLRVMESYLRPQRRVSVED
Sbjct: 421 RECEVGAGNFSLDSIPERVCVQESGPREKGIQSGELLRDLRVMESYLRPQRRVSVEDYQL 480
Query: 481 LPSPQNVTVFRRKHSYNGPHEGR 503
L V ++ P+ R
Sbjct: 481 LLGEGGVVIWAPARLSQPPNSPR 503
>gi|169171788 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
Length = 301
Score = 613 bits (1581), Expect = e-175
Identities = 300/301 (99%), Positives = 300/301 (99%)
Query: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR
Sbjct: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
Query: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC
Sbjct: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
LAPGARTVPSAKRLRSRKWPPQCTSRQH VGSGSVSIRLCGAGCERDSPIPLSSRSGTSH
Sbjct: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
Query: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL
Sbjct: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
Query: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV
Sbjct: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
Query: 301 W 301
W
Sbjct: 301 W 301
>gi|113418608 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
Length = 301
Score = 611 bits (1576), Expect = e-175
Identities = 299/301 (99%), Positives = 300/301 (99%)
Query: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR
Sbjct: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
Query: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
SEETVEDRVAPGAARNQGDLEE+GNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC
Sbjct: 61 SEETVEDRVAPGAARNQGDLEETGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRS TSH
Sbjct: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSRTSH 180
Query: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL
Sbjct: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
Query: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV
Sbjct: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
Query: 301 W 301
W
Sbjct: 301 W 301
>gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens]
Length = 951
Score = 45.4 bits (106), Expect = 1e-04
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
PR T+ + AP +SSP + + P P P L+S + + ++A A+ QGD
Sbjct: 224 PRVTLEGPSATAP-ASSPGLAKPQMPPGPCSPGPLAQLQSRQR-DYKLAALHAKQQGDTT 281
Query: 82 ESGN-------------LASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAPGARTV 128
+ SRG+ LPPP +L SPP + P P AP V
Sbjct: 282 AAARHFRVAKSFDAVLEALSRGEPVDLSCLPPPPDQLPPDPPSPPSQPPTPATAPSTTEV 341
Query: 129 PSAKR 133
P R
Sbjct: 342 PPPPR 346
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 GRRGPRATVPEQ----TQAAPVSSSPAAFQQRGDPHPRQPH-LTVPLRSEETVEDRVAPG 72
G RGP+ + T+ +P S P ++GDP P P L + ++ DR PG
Sbjct: 415 GPRGPKGEPGRRGDPGTKGSPGSDGPKG--EKGDPGPEGPRGLAGEVGNKGAKGDRGLPG 472
Query: 73 AARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRG---PDPCLAPGARTVP 129
QG L E G SRGD PG P S + P + G P P APG + P
Sbjct: 473 PRGPQGALGEPGKQGSRGD--PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEP 530
Query: 130 SAK 132
+
Sbjct: 531 GPR 533
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 GRRGPRATVPEQ----TQAAPVSSSPAAFQQRGDPHPRQPH-LTVPLRSEETVEDRVAPG 72
G RGP+ + T+ +P S P ++GDP P P L + ++ DR PG
Sbjct: 415 GPRGPKGEPGRRGDPGTKGSPGSDGPKG--EKGDPGPEGPRGLAGEVGNKGAKGDRGLPG 472
Query: 73 AARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRG---PDPCLAPGARTVP 129
QG L E G SRGD PG P S + P + G P P APG + P
Sbjct: 473 PRGPQGALGEPGKQGSRGD--PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEP 530
Query: 130 SAK 132
+
Sbjct: 531 GPR 533
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 GRRGPRATVPEQ----TQAAPVSSSPAAFQQRGDPHPRQPH-LTVPLRSEETVEDRVAPG 72
G RGP+ + T+ +P S P ++GDP P P L + ++ DR PG
Sbjct: 415 GPRGPKGEPGRRGDPGTKGSPGSDGPKG--EKGDPGPEGPRGLAGEVGNKGAKGDRGLPG 472
Query: 73 AARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRG---PDPCLAPGARTVP 129
QG L E G SRGD PG P S + P + G P P APG + P
Sbjct: 473 PRGPQGALGEPGKQGSRGD--PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEP 530
Query: 130 SAK 132
+
Sbjct: 531 GPR 533
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 43.5 bits (101), Expect = 4e-04
Identities = 38/131 (29%), Positives = 49/131 (37%), Gaps = 12/131 (9%)
Query: 20 RGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
RGP P Q+ P P QQ+ P P+QP P + +
Sbjct: 44 RGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPP 103
Query: 80 LEESGNLASRGDA-APGKGLPPPASELSSARASPPQRGPDPCLAPGARTVPSAKRLRSRK 138
+ S + ++G APG G PPAS S+ A+PP G P PG P
Sbjct: 104 QDSSKPVVAQGPGPAPGVGSAPPASS-SAPPATPPTSGAPPGSGPGPTPTP--------- 153
Query: 139 WPPQCTSRQHG 149
PP TS G
Sbjct: 154 -PPAVTSAPPG 163
Score = 32.3 bits (72), Expect = 1.0
Identities = 39/143 (27%), Positives = 50/143 (34%), Gaps = 37/143 (25%)
Query: 18 GRRGPRATVP----EQTQAAPVSSSPAAFQ---QRGDPHPRQPHLTV--PLRSEETVEDR 68
G+ GP+ +P Q Q P P Q + PHP QPH P +++ +
Sbjct: 52 GQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHP-QPHQQQQPPPPPQDSSKPV 110
Query: 69 VA--PGAARNQGDLEESGNLAS-----RGDAAPGKG-----------------LPPPASE 104
VA PG A G + + A A PG G PPP
Sbjct: 111 VAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPP 170
Query: 105 LSSARASPPQRG---PDPCLAPG 124
S +PPQ G P P PG
Sbjct: 171 SSGVPTTPPQAGGPPPPPAAVPG 193
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 43.1 bits (100), Expect = 6e-04
Identities = 78/284 (27%), Positives = 105/284 (36%), Gaps = 47/284 (16%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRG-DPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
P VP A+P +P G D P LT+ L +P + + DL
Sbjct: 569 PLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 628
Query: 81 EESGNLAS------RG-DAAPGKGL---PPPASELSSARASPPQRGPDPCLAPGARTVPS 130
+ A+ RG D+ P G PPP +EL++ + RGP P LA R P
Sbjct: 629 AGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLA--FRGAPG 686
Query: 131 AKRLRSRKWPPQCTSRQHGVGSGSVSIRLC----GAGCERDSPIPLSSRSGTSHPEDFAE 186
A WPP G GS LC G E +P P + G S P
Sbjct: 687 A----PLPWPP-------ATGPGSAD-GLCTIYETEGPESATPAPGALDPGPS-PGTSGG 733
Query: 187 DAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVLSSLCEA 246
AA +GA SR P+ + E G L A+V V +L S L L A
Sbjct: 734 KAAAGAGAGASSRSPKQARLGELPLG--ALQASV-----------VQHLLSRTL--LLAA 778
Query: 247 TELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAP 290
E G + G ++ G + G R + G W E+ +P
Sbjct: 779 AEGAAGGSGGGPGGAEGGGVTGGARAALSDAELG--RWAELLSP 820
Score = 36.6 bits (83), Expect = 0.055
Identities = 61/207 (29%), Positives = 74/207 (35%), Gaps = 29/207 (14%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHP-RQPHLTVPLRSEETVEDRVA 70
ASR A RG RA + T PV SSP P P Q L + + E+ VA
Sbjct: 91 ASRPPASGRGERAPPAKNTSPGPV-SSPGRASGTTRPGPLGQKGLRI------SAEETVA 143
Query: 71 PGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAPGARTVPS 130
G A A R + P G P PA S A P P AP AR P
Sbjct: 144 RGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRP--APSARPRPP 201
Query: 131 AKRLRSRKWPPQCTSRQHGVGSGSVSIR---LCGAGCER-------DSPIPLSS--RSGT 178
+ R ++ +H S + R G G +R S PLSS RSG
Sbjct: 202 TEGPRK----SVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGP 257
Query: 179 S---HPEDFAEDAAPWSGAENRSRPPR 202
S P A + P RPP+
Sbjct: 258 SARGTPRAPAHPSQPKPKGLQALRPPQ 284
Score = 33.1 bits (74), Expect = 0.61
Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 21/164 (12%)
Query: 21 GPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
GPR +V ++ + SPAA ++ Q + L S T A +G
Sbjct: 204 GPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARG-- 261
Query: 81 EESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAP---GARTVPSAKRLRSR 137
R A P + P L + +PP++ P L P PS
Sbjct: 262 ------TPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQS 315
Query: 138 KWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHP 181
+ PP + H S S++ C+ +P+PL+ S ++ P
Sbjct: 316 QAPPTLPATPH---SSSLT-------CQLATPLPLAPPSPSAPP 349
Score = 30.0 bits (66), Expect = 5.1
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P +P A P P + P+++ +P A+
Sbjct: 411 PPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAP------FSPPASPPVSPSA 464
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAP 123
+ A AAP +PP PAS S A+PP + P P AP
Sbjct: 465 TPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP 508
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 43.1 bits (100), Expect = 6e-04
Identities = 78/284 (27%), Positives = 105/284 (36%), Gaps = 47/284 (16%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRG-DPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
P VP A+P +P G D P LT+ L +P + + DL
Sbjct: 838 PLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 897
Query: 81 EESGNLAS------RG-DAAPGKGL---PPPASELSSARASPPQRGPDPCLAPGARTVPS 130
+ A+ RG D+ P G PPP +EL++ + RGP P LA R P
Sbjct: 898 AGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLA--FRGAPG 955
Query: 131 AKRLRSRKWPPQCTSRQHGVGSGSVSIRLC----GAGCERDSPIPLSSRSGTSHPEDFAE 186
A WPP G GS LC G E +P P + G S P
Sbjct: 956 A----PLPWPP-------ATGPGSAD-GLCTIYETEGPESATPAPGALDPGPS-PGTSGG 1002
Query: 187 DAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVLSSLCEA 246
AA +GA SR P+ + E G L A+V V +L S L L A
Sbjct: 1003 KAAAGAGAGASSRSPKQARLGELPLG--ALQASV-----------VQHLLSRTL--LLAA 1047
Query: 247 TELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAP 290
E G + G ++ G + G R + G W E+ +P
Sbjct: 1048 AEGAAGGSGGGPGGAEGGGVTGGARAALSDAELG--RWAELLSP 1089
Score = 36.6 bits (83), Expect = 0.055
Identities = 61/207 (29%), Positives = 74/207 (35%), Gaps = 29/207 (14%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHP-RQPHLTVPLRSEETVEDRVA 70
ASR A RG RA + T PV SSP P P Q L + + E+ VA
Sbjct: 91 ASRPPASGRGERAPPAKNTSPGPV-SSPGRASGTTRPGPLGQKGLRI------SAEETVA 143
Query: 71 PGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAPGARTVPS 130
G A A R + P G P PA S A P P AP AR P
Sbjct: 144 RGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRP--APSARPRPP 201
Query: 131 AKRLRSRKWPPQCTSRQHGVGSGSVSIR---LCGAGCER-------DSPIPLSS--RSGT 178
+ R ++ +H S + R G G +R S PLSS RSG
Sbjct: 202 TEGPRK----SVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGP 257
Query: 179 S---HPEDFAEDAAPWSGAENRSRPPR 202
S P A + P RPP+
Sbjct: 258 SARGTPRAPAHPSQPKPKGLQALRPPQ 284
Score = 32.7 bits (73), Expect = 0.79
Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 25/145 (17%)
Query: 9 SQTASRAFAGRRGPRATVPEQTQA---APVSSSPAAFQQ----RGDPHPRQPHLTVPLRS 61
SQ + R P+ T P + A P+SSSP A + P P + PL +
Sbjct: 270 SQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPA 329
Query: 62 EETVEDRVAPGAARNQGDLEESGNLASRGDAAP-GKGLPPPASELSSARASPPQRGPDPC 120
L S LA+ AP PP L S A+PP + P
Sbjct: 330 T-----------------LPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSM 372
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTS 145
P + PS + + + P TS
Sbjct: 373 TTPPMQAPPSLQTIPPIQVPHSLTS 397
Score = 32.7 bits (73), Expect = 0.79
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P +P A P P + P+++ +P A+
Sbjct: 636 PPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAP------FSPPASPPVSPSA 689
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAPGARTVPS 130
+ A AAP +PP PAS S A+PP + P P AP + PS
Sbjct: 690 TPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPS 740
Score = 32.0 bits (71), Expect = 1.4
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P S +P + P P + P+ T + P A
Sbjct: 679 PPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLA------- 731
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAPGARTVPS 130
AP +PP PAS S A+PP R P AP + PS
Sbjct: 732 -----------APPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPS 771
Score = 30.0 bits (66), Expect = 5.1
Identities = 29/111 (26%), Positives = 37/111 (33%), Gaps = 20/111 (18%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P +P P P + P+ T RV P A
Sbjct: 710 PPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLA------- 762
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAPGARTVPS 130
AP +PP PAS S A PP + P P + +PS
Sbjct: 763 -----------APPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPS 802
Score = 29.6 bits (65), Expect = 6.7
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 11/124 (8%)
Query: 21 GPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
GPR +V ++ + SPAA ++ Q + L S T A +G
Sbjct: 204 GPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARG-- 261
Query: 81 EESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAP---GARTVPSAKRLRSR 137
R A P + P L + +PP++ P L P PS ++R
Sbjct: 262 ------TPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKAR 315
Query: 138 KWPP 141
PP
Sbjct: 316 PVPP 319
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 43.1 bits (100), Expect = 6e-04
Identities = 78/284 (27%), Positives = 105/284 (36%), Gaps = 47/284 (16%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRG-DPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
P VP A+P +P G D P LT+ L +P + + DL
Sbjct: 530 PLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 589
Query: 81 EESGNLAS------RG-DAAPGKGL---PPPASELSSARASPPQRGPDPCLAPGARTVPS 130
+ A+ RG D+ P G PPP +EL++ + RGP P LA R P
Sbjct: 590 AGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLA--FRGAPG 647
Query: 131 AKRLRSRKWPPQCTSRQHGVGSGSVSIRLC----GAGCERDSPIPLSSRSGTSHPEDFAE 186
A WPP G GS LC G E +P P + G S P
Sbjct: 648 A----PLPWPP-------ATGPGSAD-GLCTIYETEGPESATPAPGALDPGPS-PGTSGG 694
Query: 187 DAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVLSSLCEA 246
AA +GA SR P+ + E G L A+V V +L S L L A
Sbjct: 695 KAAAGAGAGASSRSPKQARLGELPLG--ALQASV-----------VQHLLSRTL--LLAA 739
Query: 247 TELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAP 290
E G + G ++ G + G R + G W E+ +P
Sbjct: 740 AEGAAGGSGGGPGGAEGGGVTGGARAALSDAELG--RWAELLSP 781
Score = 30.4 bits (67), Expect = 3.9
Identities = 35/123 (28%), Positives = 43/123 (34%), Gaps = 29/123 (23%)
Query: 32 AAPVSSSPAAFQQRGDP----HPRQPHLTVPLRSEETVEDRVAP---GAARNQGDLEESG 84
++P S P+A RG P HP QP P + +V P AA G L S
Sbjct: 241 SSPARSGPSA---RGTPRAPAHPSQPK---PKGLQALRPPQVTPPRKDAAPALGPLSSSP 294
Query: 85 NLASRGDAAPGKGLPPPASELSSARASPPQRG----------------PDPCLAPGARTV 128
A P PP L S A+PP + P P L+P A
Sbjct: 295 LATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPP 354
Query: 129 PSA 131
P A
Sbjct: 355 PQA 357
Score = 30.0 bits (66), Expect = 5.1
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P +P A P P + P+++ +P A+
Sbjct: 372 PPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAP------FSPPASPPVSPSA 425
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAP 123
+ A AAP +PP PAS S A+PP + P P AP
Sbjct: 426 TPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP 469
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.4 bits (98), Expect = 0.001
Identities = 72/274 (26%), Positives = 94/274 (34%), Gaps = 64/274 (23%)
Query: 100 PPASELSSARASPPQRGPDPCLAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRL 159
PPA + + PPQ GP P R P ++ + PPQ +QH L
Sbjct: 455 PPAQQRPPPQGGPPQPGPGP-----QRQGPPLQQ----RPPPQ--GQQH----------L 493
Query: 160 CGAGCERDSPIPLSSRSGTSHPEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSAT 219
G G SP+P S TS P+ A AAP + + R P V GG
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRP--------VAGGPGAPPA 545
Query: 220 VKIKIIIIKNEWVSNLSSEVLSSLCEATELTGGRTPIETGTSDEGAPSSG-WRVGQQQQQ 278
+ ++ S + + +AT T P S GAP G R G Q+
Sbjct: 546 ARPP---------ASPSPQRQAGPPQATRQTSVSGPAPPKAS--GAPPGGQQRQGPPQKP 594
Query: 279 PGFREWGEMRAPGAPQVEEAQVWMQVLDSHKGEEPVTHPTTPLKWVKGNPG-AGHP---- 333
PG P P + +Q G P T P T + PG AG P
Sbjct: 595 PG---------PAGPTRQASQA---------GPVPRTGPPTTQQPRPSGPGPAGRPKPQL 636
Query: 334 AQKKRSKSPTPTHVHKGPLVHQEGETCHQATVAY 367
AQK P P G H + T A+
Sbjct: 637 AQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAF 670
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 41.6 bits (96), Expect = 0.002
Identities = 70/263 (26%), Positives = 91/263 (34%), Gaps = 64/263 (24%)
Query: 100 PPASELSSARASPPQRGPDPCLAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRL 159
PPA + + PPQ GP P R P ++ + PPQ +QH L
Sbjct: 455 PPAQQRPPPQGGPPQPGPGP-----QRQGPPLQQ----RPPPQ--GQQH----------L 493
Query: 160 CGAGCERDSPIPLSSRSGTSHPEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSAT 219
G G SP+P S TS P+ A AAP + + R P V GG
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRP--------VAGGPGAPPA 545
Query: 220 VKIKIIIIKNEWVSNLSSEVLSSLCEATELTGGRTPIETGTSDEGAPSSG-WRVGQQQQQ 278
+ ++ S + + +AT T P S GAP G R G Q+
Sbjct: 546 ARPP---------ASPSPQRQAGPPQATRQTSVSGPAPPKAS--GAPPGGQQRQGPPQKP 594
Query: 279 PGFREWGEMRAPGAPQVEEAQVWMQVLDSHKGEEPVTHPTTPLKWVKGNPG-AGHP---- 333
PG P P + +Q G P T P T + PG AG P
Sbjct: 595 PG---------PAGPTRQASQA---------GPVPRTGPPTTQQPRPSGPGPAGRPKPQL 636
Query: 334 AQKKRSKSPTPTHVHKGPLVHQE 356
AQK P P G H +
Sbjct: 637 AQKPSQDVPPPATAAAGGPPHPQ 659
>gi|226437606 ankyrin repeat domain 34C [Homo sapiens]
Length = 535
Score = 40.8 bits (94), Expect = 0.003
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 25 TVPEQTQAAPVSSSP----AAFQQRGDPHPRQPHL-TVPLRSEETVEDRVAPGAARNQGD 79
TV EQ PVSS+P AA+++ PHPR T+P+ E+ P A +
Sbjct: 312 TVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGTLPVDQEKCGMGPSGPSALKEPAS 371
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQR---GPDPCLAPGAR----TVPSAK 132
L+ N D PG PP + L S + ++ L G+R TVPS
Sbjct: 372 LKWLENDLYDLDIQPGPD-PPNSISLESGKGPLDRKKLNSSHLSLFHGSRESLDTVPSTS 430
Query: 133 RLRSRKWPPQCTSRQHGVGSGSV 155
+R+ PP R+ GSG++
Sbjct: 431 PSSARRRPPHLLERR---GSGTL 450
>gi|239756364 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]
Length = 534
Score = 40.8 bits (94), Expect = 0.003
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 25 TVPEQTQAAPVSSSP----AAFQQRGDPHPRQPHL-TVPLRSEETVEDRVAPGAARNQGD 79
TV EQ PVSS+P AA+++ PHPR T+P+ E+ P A +
Sbjct: 311 TVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGTLPVDQEKCGMGPSGPSALKEPAS 370
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQR---GPDPCLAPGAR----TVPSAK 132
L+ N D PG PP + L S + ++ L G+R TVPS
Sbjct: 371 LKWLENDLYDLDIQPGPD-PPNSISLESGKGPLDRKKLNSSHLSLFHGSRESLDTVPSTS 429
Query: 133 RLRSRKWPPQCTSRQHGVGSGSV 155
+R+ PP R+ GSG++
Sbjct: 430 PSSARRRPPHLLERR---GSGTL 449
>gi|239750889 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]
Length = 534
Score = 40.8 bits (94), Expect = 0.003
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 25 TVPEQTQAAPVSSSP----AAFQQRGDPHPRQPHL-TVPLRSEETVEDRVAPGAARNQGD 79
TV EQ PVSS+P AA+++ PHPR T+P+ E+ P A +
Sbjct: 311 TVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGTLPVDQEKCGMGPSGPSALKEPAS 370
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQR---GPDPCLAPGAR----TVPSAK 132
L+ N D PG PP + L S + ++ L G+R TVPS
Sbjct: 371 LKWLENDLYDLDIQPGPD-PPNSISLESGKGPLDRKKLNSSHLSLFHGSRESLDTVPSTS 429
Query: 133 RLRSRKWPPQCTSRQHGVGSGSV 155
+R+ PP R+ GSG++
Sbjct: 430 PSSARRRPPHLLERR---GSGTL 449
>gi|239745252 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]
Length = 535
Score = 40.8 bits (94), Expect = 0.003
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 25 TVPEQTQAAPVSSSP----AAFQQRGDPHPRQPHL-TVPLRSEETVEDRVAPGAARNQGD 79
TV EQ PVSS+P AA+++ PHPR T+P+ E+ P A +
Sbjct: 312 TVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGTLPVDQEKCGMGPSGPSALKEPAS 371
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQR---GPDPCLAPGAR----TVPSAK 132
L+ N D PG PP + L S + ++ L G+R TVPS
Sbjct: 372 LKWLENDLYDLDIQPGPD-PPNSISLESGKGPLDRKKLNSSHLSLFHGSRESLDTVPSTS 430
Query: 133 RLRSRKWPPQCTSRQHGVGSGSV 155
+R+ PP R+ GSG++
Sbjct: 431 PSSARRRPPHLLERR---GSGTL 450
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 40.0 bits (92), Expect = 0.005
Identities = 48/185 (25%), Positives = 66/185 (35%), Gaps = 30/185 (16%)
Query: 31 QAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEET------VEDRVAPGAARNQGDLEESG 84
+A P S A + G+ P + P EE VE A G A+ + + E G
Sbjct: 2188 EAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQG 2247
Query: 85 NLASRGDAAPGKGLPPPASELSSA----RASPPQR--GPDPCLAPGARTVPSAKRLRS-- 136
+ G G ASE SS R +PP G P PG++T PS+ R S
Sbjct: 2248 EKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASSWG 2307
Query: 137 RKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHPEDFAEDAAPWSGAEN 196
W + H +G D+ P + +GT H E A P S
Sbjct: 2308 NCWQKD-SENDHVLG---------------DTRSPDAKSTGTPHAERKATRMYPESSTSE 2351
Query: 197 RSRPP 201
+ P
Sbjct: 2352 QEEAP 2356
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 39.7 bits (91), Expect = 0.006
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 21/176 (11%)
Query: 22 PRATVPEQTQAAPVSSSPAA--FQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
PR T+ E +Q+ P ++ Q P ++P T+ E ++ +
Sbjct: 2667 PRVTLHELSQSVPQETAEGIPPGSQDSSPEHQEPR-TLDTTYGEVSDNLLVTAQGEKTAH 2725
Query: 80 LEESGNLASRGDAAPGKG-------LPPPASELSSARASPPQRGPDPCLAPGARTVPSAK 132
E ++ G P ++ RASP Q + PGA T
Sbjct: 2726 FESQSVTCDVQNSTSASGPKQDHVQCPEASTGFEEGRASPKQ----DIILPGALT----- 2776
Query: 133 RLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHPEDFAEDA 188
R+ QC + VGSG + C AG + PIPL + +++P E+A
Sbjct: 2777 RVALEAPTQQCVQCKESVGSGLTEV--CRAGSKHSRPIPLPDQRPSANPGGIGEEA 2830
>gi|239750815 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 39.7 bits (91), Expect = 0.006
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 21/176 (11%)
Query: 22 PRATVPEQTQAAPVSSSPAA--FQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
PR T+ E +Q+ P ++ Q P ++P T+ E ++ +
Sbjct: 2667 PRVTLHELSQSVPQETAEGIPPGSQDSSPEHQEPR-TLDTTYGEVSDNLLVTAQGEKTAH 2725
Query: 80 LEESGNLASRGDAAPGKG-------LPPPASELSSARASPPQRGPDPCLAPGARTVPSAK 132
E ++ G P ++ RASP Q + PGA T
Sbjct: 2726 FESQSVTCDVQNSTSASGPKQDHVQCPEASTGFEEGRASPKQ----DTILPGALT----- 2776
Query: 133 RLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHPEDFAEDA 188
R+ QC + VGSG + C AG + PIPL + +++P E+A
Sbjct: 2777 RVALEAPTQQCVQCKESVGSGLTEV--CRAGSKHSRPIPLPDQRPSANPGGIGEEA 2830
>gi|239745175 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 39.7 bits (91), Expect = 0.006
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 21/176 (11%)
Query: 22 PRATVPEQTQAAPVSSSPAA--FQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
PR T+ E +Q+ P ++ Q P ++P T+ E ++ +
Sbjct: 2667 PRVTLHELSQSVPQETAEGIPPGSQDSSPEHQEPR-TLDTTYGEVSDNLLVTAQGEKTAH 2725
Query: 80 LEESGNLASRGDAAPGKG-------LPPPASELSSARASPPQRGPDPCLAPGARTVPSAK 132
E ++ G P ++ RASP Q + PGA T
Sbjct: 2726 FESQSVTCDVQNSTSASGPKQDHVQCPEASTGFEEGRASPKQ----DTILPGALT----- 2776
Query: 133 RLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHPEDFAEDA 188
R+ QC + VGSG + C AG + PIPL + +++P E+A
Sbjct: 2777 RVALEAPTQQCVQCKESVGSGLTEV--CRAGSKHSRPIPLPDQRPSANPGGIGEEA 2830
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 39.7 bits (91), Expect = 0.006
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 20 RGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
R P A P AAP S A +RG+P +QP R E+ E+ A GAA D
Sbjct: 90 REPPAAAPSAGGAAPCSPRGA---RRGEPPQQQPRRR---RREKEPEEEPA-GAAARAAD 142
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLA 122
+G S APGKG ++ SP QR P P A
Sbjct: 143 AACNGLPGSDSRRAPGKG--------GGSKGSPGQRPPVPAAA 177
>gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo
sapiens]
Length = 347
Score = 39.3 bits (90), Expect = 0.008
Identities = 60/224 (26%), Positives = 84/224 (37%), Gaps = 44/224 (19%)
Query: 9 SQTASRAFAGRRGP----RATVPEQTQAAPVSSSPAAFQQRGDPHPRQPH---------- 54
S T + A AGR P R + Q+ S PA +++ PR +
Sbjct: 113 SFTHAGARAGRASPEPCRRGAQSMEPQSRAWESQPADGRKQSREAPRSGYEGDGSGRGCR 172
Query: 55 ---LTVPLRSEETVED--RVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSAR 109
T P + ++ + RV P Q E SG A G+ LP PA+ ++A
Sbjct: 173 DSGATYPAGARRSLAEAERVGPKPLPEQ---ERSG--------ASGRCLPAPAAFSAAAP 221
Query: 110 ASPPQ----RGPDPCLAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCG--AG 163
A P G D +AP + P+ R RQ G GSG+ G AG
Sbjct: 222 ARRPPACLPEGEDAPVAPPSSARPALPSFLLRPSGYLAARRQRGPGSGAAETGFRGSCAG 281
Query: 164 CERDSPIPLSSRSGTSHPEDFAE--DAAPWSGAENRSRPPRSCW 205
C R + + S GT+H A + P SG + PR W
Sbjct: 282 CGRG--LRIQSHPGTTHLHQGASFTSSEPLSGISS----PRGVW 319
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 38.9 bits (89), Expect = 0.011
Identities = 45/160 (28%), Positives = 61/160 (38%), Gaps = 33/160 (20%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAP----------VSSSPAAFQQRGDPHPRQPHLTVPLRS 61
A+ A G R P A +PE T+ AP +++ A ++ R P P L S
Sbjct: 191 AAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFL-----S 245
Query: 62 EETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCL 121
R P R ESG RG + G + A A P P PCL
Sbjct: 246 PRRTRPRKHPERTRRPAQRLESG---CRGHCSRG----------APALAPPKLSPPFPCL 292
Query: 122 APGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCG 161
A A A+R S R+ +GSGS+++ L G
Sbjct: 293 AQSASRAAGARRALSAS-----RGRRGLLGSGSLALPLPG 327
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 38.9 bits (89), Expect = 0.011
Identities = 45/160 (28%), Positives = 61/160 (38%), Gaps = 33/160 (20%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAP----------VSSSPAAFQQRGDPHPRQPHLTVPLRS 61
A+ A G R P A +PE T+ AP +++ A ++ R P P L S
Sbjct: 191 AAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFL-----S 245
Query: 62 EETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCL 121
R P R ESG RG + G + A A P P PCL
Sbjct: 246 PRRTRPRKHPERTRRPAQRLESG---CRGHCSRG----------APALAPPKLSPPFPCL 292
Query: 122 APGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCG 161
A A A+R S R+ +GSGS+++ L G
Sbjct: 293 AQSASRAAGARRALSAS-----RGRRGLLGSGSLALPLPG 327
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 38.9 bits (89), Expect = 0.011
Identities = 45/160 (28%), Positives = 61/160 (38%), Gaps = 33/160 (20%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAP----------VSSSPAAFQQRGDPHPRQPHLTVPLRS 61
A+ A G R P A +PE T+ AP +++ A ++ R P P L S
Sbjct: 191 AAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFL-----S 245
Query: 62 EETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCL 121
R P R ESG RG + G + A A P P PCL
Sbjct: 246 PRRTRPRKHPERTRRPAQRLESG---CRGHCSRG----------APALAPPKLSPPFPCL 292
Query: 122 APGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCG 161
A A A+R S R+ +GSGS+++ L G
Sbjct: 293 AQSASRAAGARRALSAS-----RGRRGLLGSGSLALPLPG 327
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 37.0 bits (84), Expect = 0.042
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQR---GDPHPRQPHLTVPLRSEETVEDRVAPGAARNQG 78
P P+ AA ++ PA + G P P+ P L P APGAA + G
Sbjct: 19 PEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEP-----------APGAAADGG 67
Query: 79 DLEESGNLASR--GDAAPGKGLPPPASELSSARASPPQRGPDP 119
+G G PG PPP S ASP GP P
Sbjct: 68 ARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGP 110
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 37.0 bits (84), Expect = 0.042
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 31 QAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLEESGNLASRG 90
+ APVS P + R + + HL R + T PG G E SG+
Sbjct: 68 RGAPVSFRPGGRKSRKELRKEKRHLRKARRLQRTAGPEQGPGLGGRSGAEEASGHRQDTE 127
Query: 91 DAAPGKGLPPPASELSSARASPPQRGPDPCLAPGARTVPSA 131
+ A P P+ + S R P R A A+T PSA
Sbjct: 128 ERA----RPAPSRDPSPPRKPRPSRVKAKATAATAKTRPSA 164
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 37.0 bits (84), Expect = 0.042
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 20/132 (15%)
Query: 9 SQTASRAFAGRRGPRATVP----EQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEET 64
+Q A+R GR R P + +P P A +RG R E
Sbjct: 363 AQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRG-------------RMAEA 409
Query: 65 VEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAPG 124
R +P A + E+ +L R A P P +E R P+RGP P LA
Sbjct: 410 SGRRGSPRARKASRSQSET-SLLGRASAVPSGPPKYPTAEREEPRPPRPRRGPAPTLA-- 466
Query: 125 ARTVPSAKRLRS 136
A+ S +R RS
Sbjct: 467 AQAAGSCRRWRS 478
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,677,849
Number of Sequences: 37866
Number of extensions: 1422564
Number of successful extensions: 5891
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 325
Number of HSP's that attempted gapping in prelim test: 5412
Number of HSP's gapped (non-prelim): 838
length of query: 505
length of database: 18,247,518
effective HSP length: 107
effective length of query: 398
effective length of database: 14,195,856
effective search space: 5649950688
effective search space used: 5649950688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.