Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169171444
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo
sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo sap... 262 4e-71
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 40 6e-04
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens] 37 0.005
gi|239754854 PREDICTED: hypothetical protein [Homo sapiens] 33 0.043
gi|239754508 PREDICTED: hypothetical protein [Homo sapiens] 33 0.043
gi|239749393 PREDICTED: hypothetical protein [Homo sapiens] 33 0.043
gi|239749068 PREDICTED: hypothetical protein [Homo sapiens] 33 0.043
gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo ... 33 0.043
gi|239743094 PREDICTED: hypothetical protein XP_002342753 [Homo ... 33 0.043
gi|239508747 PREDICTED: hypothetical protein [Homo sapiens] 33 0.043
gi|239756303 PREDICTED: hypothetical protein [Homo sapiens] 33 0.056
gi|195947369 junction-mediating and regulatory protein [Homo sap... 33 0.056
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 33 0.073
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens] 33 0.073
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 33 0.073
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 32 0.095
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 32 0.095
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 32 0.12
gi|239755298 PREDICTED: hypothetical protein [Homo sapiens] 32 0.16
gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo ... 32 0.16
gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo ... 32 0.16
gi|112421108 capicua homolog [Homo sapiens] 32 0.16
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.16
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.21
gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens] 31 0.21
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.21
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.21
gi|110832843 TBP-associated factor 4 [Homo sapiens] 31 0.21
gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens] 31 0.21
>gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo
sapiens]
Length = 125
Score = 262 bits (670), Expect = 4e-71
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MSVRIKETCRRQSCVHRCTCASQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRF 60
MSVRIKETCRRQSCVHRCTCASQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRF
Sbjct: 1 MSVRIKETCRRQSCVHRCTCASQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRF 60
Query: 61 PGRRLRLRLRLCGLPPPRQERPGARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSW 120
PGRRLRLRLRLCGLPPPRQERPGARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSW
Sbjct: 61 PGRRLRLRLRLCGLPPPRQERPGARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSW 120
Query: 121 KTRQL 125
KTRQL
Sbjct: 121 KTRQL 125
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 39.7 bits (91), Expect = 6e-04
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 19 TCASQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPR 78
T A +R+R T + SRTPA G S R S R P RR R R R P R
Sbjct: 588 TPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRR-RSRSRS---PARR 643
Query: 79 QERPGARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSWKTRQ 124
R +R RR S +++ A R R+ ARR+GR+ R+
Sbjct: 644 SGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARR 689
Score = 35.0 bits (79), Expect = 0.015
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Query: 21 ASQRARVETISPAT---PPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPP 77
+++R R + SPAT SRTPA G S R P RR R R R P
Sbjct: 556 SARRGRSHSRSPATRGRSRSRTPARRGRSRS----------RTPARR-RSRSRT-----P 599
Query: 78 RQERPGARWKLRRAPSPAQSLASRRSRRAEPAARRA 113
+ R +R RR S +++ A RRSR P RR+
Sbjct: 600 TRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 635
Score = 28.5 bits (62), Expect = 1.4
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 44 GTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPGAR-----WKLRRA-PSPAQS 97
G+ + PAR R RR R R R PP ++R +R WK R+ SPA
Sbjct: 1817 GSGYHSRSPARQESSRTSSRRRRGRSRT---PPTSRKRSRSRTSPAPWKRSRSRASPATH 1873
Query: 98 ---------LASRRSR-RAEPAARRAGRAAQSWKTRQ 124
++ RRSR R P +RR R+ S R+
Sbjct: 1874 RRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRR 1910
Score = 26.2 bits (56), Expect = 6.8
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 21 ASQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRF-PGRRLRLRLRLCGLPPPRQ 79
+S+R R + +P T R+ S +P P + S R P R R R L R+
Sbjct: 1834 SSRRRRGRSRTPPTSRKRS-----RSRTSPAPWKRSRSRASPATHRRSRSRT-PLISRRR 1887
Query: 80 ERPGARWKLRRAPSPAQSLASRRSR-RAEPAARRAGRAAQSWKTRQ 124
R RR S+ RRSR RA P +RR R+ TR+
Sbjct: 1888 SRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRR 1933
Score = 25.8 bits (55), Expect = 8.9
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 31 SPATPPSRTPAGCGTSAETPGPA-----RWSVWRFPGR-RLRLRLRLCGL----PPPRQE 80
S TP S G+ + PGP R SV + R+ L L L PPP
Sbjct: 2141 SSRTPMSVLQQAGGSMMDGPGPRIPDHQRTSVPENHAQSRIALALTAISLGTARPPPSMS 2200
Query: 81 RPGARWKLRRAPSPAQSLASRRSRRAEPAARRAGR 115
G ++ + P+P + S R PAA A R
Sbjct: 2201 AAGLAARMSQVPAPVPLM----SLRTAPAANLASR 2231
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 37.0 bits (84), Expect = 0.004
Identities = 39/116 (33%), Positives = 48/116 (41%), Gaps = 25/116 (21%)
Query: 28 ETISPA------TPPSRTPAGCGTSAETPG-------PARWSVWRFPGRRLRLRLRLCGL 74
+T+ PA +PP+ PA S E PG PAR + W P R R R G
Sbjct: 41 KTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGP 100
Query: 75 --PPPRQERPGARWKLRRAPSPAQSLASRRSRRAEPA-ARRAG--RAAQSWKTRQL 125
PP R G RR+P+P + R PA RAG AA S TR +
Sbjct: 101 AGPPCRAPGRGRAAATRRSPAPG-------TARGSPAGVERAGGATAASSAGTRSV 149
>gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]
Length = 645
Score = 36.6 bits (83), Expect = 0.005
Identities = 35/98 (35%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 24 RARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRL-RLCGLPPPRQERP 82
R+R +P PP P G + P RWS WR PGR L L L LC LP +
Sbjct: 3 RSRGGRAAPGPPPPPPPPG-----QAP---RWSRWRVPGRLLLLLLPALCCLPGAARAAA 54
Query: 83 GARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSW 120
A RA A ++A R+ AE A A Q+W
Sbjct: 55 AAAGAGNRA---AVAVAVARADEAE-----APFAGQNW 84
>gi|239754854 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.043
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 22 SQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRL----RLCGLPPP 77
S+ A ET+ P+ TP C ++ PG + + G LR + R +PPP
Sbjct: 91 SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
Query: 78 RQERPGARWKLRR 90
PGAR + RR
Sbjct: 151 SPRTPGARRRQRR 163
>gi|239754508 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 33.5 bits (75), Expect = 0.043
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 23 QRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERP 82
Q AR T SP P A S+ +P P S FP R RL PP R P
Sbjct: 215 QAARARTASPLCP-----ATARASSSSPAPLFPSPSPFPPLLCRARLSPRNQPPCRVRLP 269
Query: 83 GARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSWKT 122
G R ++ +R+SR+++ AA + R WKT
Sbjct: 270 GIPHAAR------VTVNTRQSRKSKKAANQ--RDFSIWKT 301
>gi|239749393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.043
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 22 SQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRL----RLCGLPPP 77
S+ A ET+ P+ TP C ++ PG + + G LR + R +PPP
Sbjct: 91 SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
Query: 78 RQERPGARWKLRR 90
PGAR + RR
Sbjct: 151 SPRTPGARRRQRR 163
>gi|239749068 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 33.5 bits (75), Expect = 0.043
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 23 QRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERP 82
Q AR T SP P A S+ +P P S FP R RL PP R P
Sbjct: 215 QAARARTASPLCP-----ATARASSSSPAPLFPSPSPFPPLLCRARLSPRNQPPCRVRLP 269
Query: 83 GARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSWKT 122
G R ++ +R+SR+++ AA + R WKT
Sbjct: 270 GIPHAAR------VTVNTRQSRKSKKAANQ--RDFSIWKT 301
>gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo
sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.043
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 22 SQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRL----RLCGLPPP 77
S+ A ET+ P+ TP C ++ PG + + G LR + R +PPP
Sbjct: 91 SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
Query: 78 RQERPGARWKLRR 90
PGAR + RR
Sbjct: 151 SPRTPGARRRQRR 163
>gi|239743094 PREDICTED: hypothetical protein XP_002342753 [Homo
sapiens]
Length = 308
Score = 33.5 bits (75), Expect = 0.043
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 23 QRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERP 82
Q AR T SP P A S+ +P P S FP R RL PP R P
Sbjct: 215 QAARARTASPLCP-----ATARASSSSPAPLFPSPSPFPPLLCRARLSPRNQPPCRVRLP 269
Query: 83 GARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSWKT 122
G R ++ +R+SR+++ AA + R WKT
Sbjct: 270 GIPHAAR------VTVNTRQSRKSKKAANQ--RDFSIWKT 301
>gi|239508747 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 33.5 bits (75), Expect = 0.043
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 23 QRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERP 82
Q AR T SP P A S+ +P P S FP R RL PP R P
Sbjct: 215 QAARARTASPLCP-----ATARASSSSPAPLFPSPSPFPPLLCRARLSPRNQPPCRVRLP 269
Query: 83 GARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSWKT 122
G R ++ +R+SR+++ AA + R WKT
Sbjct: 270 GIPHAAR------VTVNTRQSRKSKKAANQ--RDFSIWKT 301
>gi|239756303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 232
Score = 33.1 bits (74), Expect = 0.056
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 61 PGRRLRLRLRLCGLPPPRQERPGARWKLRRAPSPAQSLASRR--SRRAEPAARRAGRAAQ 118
P RR R R L PP R G RR A +L R +RR P +RRAG A++
Sbjct: 109 PTRRHRARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASR 168
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 33.1 bits (74), Expect = 0.056
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 21 ASQRARVETISPATPPSR---TPAGCG--------TSAETPGPARWSVWRFPGRRLRLRL 69
A R E A+ SR +PAG G T +PGP R S W G R
Sbjct: 62 AGARGGAEAGGAASDGSRGPGSPAGRGRPEATASATLVRSPGPRRSSAWAEGGSPRSTRS 121
Query: 70 RLCGLPPPRQERPGARWKLRRAPSP--AQSLASRRSRRAEPAARRAGRAAQ 118
L PR PG++ R SP A+ + +++ A+ AA A AA+
Sbjct: 122 L---LGDPRLRSPGSKGAESRLRSPVRAKPIPGQKTSEADDAAGAAAAAAR 169
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 32.7 bits (73), Expect = 0.073
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 22 SQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQER 81
S R+ +SP+ P S PA G PG R P R R L P R
Sbjct: 48 SSRSLARPVSPSAPRSIAPARPGARPPRPGRPLAPRARQPVPH-RAVPRQGSLREPLPSR 106
Query: 82 PGARWKLRRAPSPAQSLASRRSRRAEPAARRAGRA 116
G R AP P+ SL R +R +P+A RA
Sbjct: 107 RGRRGPPGHAP-PSPSLRRRGARALQPSAAARARA 140
>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 32.7 bits (73), Expect = 0.073
Identities = 35/102 (34%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 24 RARVETISPATPPSRTPA------GCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPP 77
RAR ET PA+ SRT E+P P + R G R R + L P
Sbjct: 6 RAREETPGPASTASRTRVHQQRRGSAPRGGESPDPGAGAGDRRGGARQRPQR----LSEP 61
Query: 78 RQER----PGARWKLRRAPSPAQSLASRRSRRAEPAARRAGR 115
RQ + PGA P SL+S RA PAAR R
Sbjct: 62 RQPQAVPVPGAASYRLGLPPTLTSLSSSVPGRASPAARLRNR 103
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 32.7 bits (73), Expect = 0.073
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 22 SQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQER 81
S R+ +SP+ P S PA G PG R P R R L P R
Sbjct: 48 SSRSLARPVSPSAPRSIAPARPGARPPRPGRPLAPRARQPVPH-RAVPRQGSLREPLPSR 106
Query: 82 PGARWKLRRAPSPAQSLASRRSRRAEPAARRAGRA 116
G R AP P+ SL R +R +P+A RA
Sbjct: 107 RGRRGPPGHAP-PSPSLRRRGARALQPSAAARARA 140
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 32.3 bits (72), Expect = 0.095
Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 32/97 (32%)
Query: 24 RARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPG 83
RA ++ PP P+G G + E GPA W PG G P P RP
Sbjct: 390 RASLQEEPKRRPPCARPSGAGPARE--GPAAW-----PG----------GAPTPPHARPT 432
Query: 84 ARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSW 120
R R+ P P P A R G A+ W
Sbjct: 433 GR---RQDPEPG------------PRAPRGGPASSGW 454
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 32.3 bits (72), Expect = 0.095
Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 32/97 (32%)
Query: 24 RARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPG 83
RA ++ PP P+G G + E GPA W PG G P P RP
Sbjct: 390 RASLQEEPKRRPPCARPSGAGPARE--GPAAW-----PG----------GAPTPPHARPT 432
Query: 84 ARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSW 120
R R+ P P P A R G A+ W
Sbjct: 433 GR---RQDPEPG------------PRAPRGGPASSGW 454
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 32.0 bits (71), Expect = 0.12
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 25 ARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPP---RQER 81
A V + P P P G + G W+ + RRLRLR + P P R +
Sbjct: 187 APVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQL 246
Query: 82 PGARWKLRRAPSPAQSLASRRSRRAEPAARRAGR 115
P + R P PA RR+R +P + R R
Sbjct: 247 PETARRPRPRPRPA---LPRRAREPQPGSGRRCR 277
>gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 31.6 bits (70), Expect = 0.16
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 25 ARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPGA 84
AR + PP R+P G A ++ RR LR C +P PR RP A
Sbjct: 117 ARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPAPR--RPAA 174
Query: 85 RWKL-RRAPSPAQSLASRRSRRAEP 108
+L A SP A R + P
Sbjct: 175 AARLGSAARSPGAPPAGRSLAQPHP 199
>gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo
sapiens]
Length = 250
Score = 31.6 bits (70), Expect = 0.16
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 25 ARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPGA 84
AR + PP R+P G A ++ RR LR C +P PR RP A
Sbjct: 70 ARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPAPR--RPAA 127
Query: 85 RWKL-RRAPSPAQSLASRRSRRAEP 108
+L A SP A R + P
Sbjct: 128 AARLGSAARSPGAPPAGRSLAQPHP 152
>gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo
sapiens]
Length = 250
Score = 31.6 bits (70), Expect = 0.16
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 25 ARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPGA 84
AR + PP R+P G A ++ RR LR C +P PR RP A
Sbjct: 70 ARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPAPR--RPAA 127
Query: 85 RWKL-RRAPSPAQSLASRRSRRAEP 108
+L A SP A R + P
Sbjct: 128 AARLGSAARSPGAPPAGRSLAQPHP 152
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 31.6 bits (70), Expect = 0.16
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 22 SQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQER 81
S+ R + PAT + P G E PGP+ + G + L+ LPP ++E+
Sbjct: 585 SKATRFLPMDPATFRRKRPESVG-GLEPPGPSVIAAPPSGGGNI---LQTLVLPPNKEEQ 640
Query: 82 PGARWKLRRAPSPAQSLASRRSRRAEPAA 110
G ++ AP+P+ + + + + PAA
Sbjct: 641 EGGGARVPSAPAPSLAYGAPAAPLSRPAA 669
Score = 28.1 bits (61), Expect = 1.8
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 28 ETISP---ATPPSRTPAGCGTSAETPG------PARWSVWRFPGRRLRLRLRLCGLPP-P 77
ET +P ++PP PA TSA+ P P+ S WR PG+ L R G PP P
Sbjct: 1237 ETWTPTARSSPPLPPPAEERTSAKGPETMASKFPSSSSDWRVPGQGLENR----GEPPTP 1292
Query: 78 RQERPGARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQSWKTR 123
P AP + +S R+ P + A + K R
Sbjct: 1293 PSPAPAP----AVAPGGSSESSSGRAAGDTPERKEAAGTGKKVKVR 1334
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 31.6 bits (70), Expect = 0.16
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 24/113 (21%)
Query: 10 RRQSCVHRCTCASQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRL 69
RR S + +S + P PP RT + P R+ R RL
Sbjct: 349 RRSSASLSGSSSSSSSSRSRSPPKKPPKRTSS-------------------PPRKTR-RL 388
Query: 70 RLCGLPPPRQERPGARW----KLRRAPSPAQSLASRRSRRAEPAARRAGRAAQ 118
PP R+ RP K R +P+P QS +R+SR + R +G+ +
Sbjct: 389 SPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTK 441
Score = 30.0 bits (66), Expect = 0.47
Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 22/104 (21%)
Query: 10 RRQSCVHRCTCASQRARVETISPATPPSRTPAGCGTSAE-TPGPARWSVWRFPGRRLRLR 68
RR+ R S R R + SP R+P+ T +P PA
Sbjct: 520 RRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPA--------------- 564
Query: 69 LRLCGLPPPRQERPGARWKLRRAPSPAQSLASRRSRRAEPAARR 112
PPPR+ R RR PSP S RR P +R
Sbjct: 565 ------PPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQR 602
Score = 25.8 bits (55), Expect = 8.9
Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 24/120 (20%)
Query: 10 RRQSCVHRCTCASQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRL 69
R +S H R+R + SP PS P P R R P RR+
Sbjct: 289 RSRSPSHTRPRRRHRSRSRSYSPRRRPS--------PRRRPSPRR----RTPPRRMP--- 333
Query: 70 RLCGLPPPRQERPGARWKLRRAPSPA---QSLASRRSRRAEPAARRAGR-AAQSWKTRQL 125
PPPR R + + RR S + S +S SR P + R ++ KTR+L
Sbjct: 334 -----PPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRL 388
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 31.2 bits (69), Expect = 0.21
Identities = 31/109 (28%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 26 RVETISPATPPSRTPAG--CGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPG 83
RV + PP P G C A R + G LR LP P + PG
Sbjct: 159 RVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQG----LRAPAARLPEPTRRAPG 214
Query: 84 --------------ARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQ 118
A W+ RRAP P S R R R R AQ
Sbjct: 215 RPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQ 263
>gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]
Length = 758
Score = 31.2 bits (69), Expect = 0.21
Identities = 36/102 (35%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 31 SPATPPSRTPAGCGTSAETP-----GPARWSVWRFPGRR--LRLRLRLCGLPPPRQERPG 83
SPATP + PA AE P GP R S PGRR R R GL R +R G
Sbjct: 18 SPATPSA--PAAQRALAEQPMSARLGPTRGSQGSAPGRRRGRRQRRHRRGLRARRPQRHG 75
Query: 84 ARWKLRRAPSPAQ----SLASRRSRRAEPAA------RRAGR 115
A + Q + RR RR P RR GR
Sbjct: 76 GSGTAAHAGAARQVASGFMPHRRRRRTAPGQPWASGFRRQGR 117
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 31.2 bits (69), Expect = 0.21
Identities = 31/109 (28%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 26 RVETISPATPPSRTPAG--CGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPG 83
RV + PP P G C A R + G LR LP P + PG
Sbjct: 159 RVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQG----LRAPAARLPEPTRRAPG 214
Query: 84 --------------ARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQ 118
A W+ RRAP P S R R R R AQ
Sbjct: 215 RPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQ 263
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 31.2 bits (69), Expect = 0.21
Identities = 31/109 (28%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 26 RVETISPATPPSRTPAG--CGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPG 83
RV + PP P G C A R + G LR LP P + PG
Sbjct: 159 RVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQG----LRAPAARLPEPTRRAPG 214
Query: 84 --------------ARWKLRRAPSPAQSLASRRSRRAEPAARRAGRAAQ 118
A W+ RRAP P S R R R R AQ
Sbjct: 215 RPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQ 263
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 31.2 bits (69), Expect = 0.21
Identities = 23/86 (26%), Positives = 34/86 (39%)
Query: 31 SPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPGARWKLRR 90
+P+ P + PA + P PA ++ R PG +PPP + G
Sbjct: 254 APSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAP 313
Query: 91 APSPAQSLASRRSRRAEPAARRAGRA 116
AP+PA + S + P A A A
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAAAAPA 339
>gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens]
Length = 566
Score = 31.2 bits (69), Expect = 0.21
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 33 ATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRLRLCGLPPPRQERPGARWKL--RR 90
ATPP+R G G +AE S R G+ P R GA W+ R
Sbjct: 52 ATPPTREEPGKGLTAEAAREQSGS-----------PCRAAGVSPGTGGREGAEWRAGGRE 100
Query: 91 APSPAQSLASRRSRRAEPAARRA 113
P P+ S + ++ A RRA
Sbjct: 101 GPGPSPSPSPSPAKPAGAELRRA 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.130 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,811,559
Number of Sequences: 37866
Number of extensions: 401518
Number of successful extensions: 2523
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 228
Number of HSP's that attempted gapping in prelim test: 2302
Number of HSP's gapped (non-prelim): 413
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.