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Search of human proteins with 169169260
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169169260 PREDICTED: hypothetical protein LOC100130890
isoform 1 [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169169157 PREDICTED: hypothetical protein LOC100130890 isofor... 201 1e-52
gi|169168771 PREDICTED: hypothetical protein LOC100130890 isofor... 201 1e-52
gi|169169260 PREDICTED: hypothetical protein LOC100130890 isofor... 201 1e-52
gi|163965377 putative thiosulfate sulfurtransferase KAT isoform ... 44 4e-05
gi|163965371 putative thiosulfate sulfurtransferase KAT isoform ... 44 4e-05
gi|17402865 thiosulfate sulfurtransferase [Homo sapiens] 27 4.6
gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Hom... 26 6.0
gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Hom... 26 6.0
gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Hom... 26 6.0
gi|122937388 MAX gene associated [Homo sapiens] 26 6.0
gi|61563742 hect domain and RLD 6 [Homo sapiens] 26 7.8
>gi|169169157 PREDICTED: hypothetical protein LOC100130890 isoform
1 [Homo sapiens]
Length = 97
Score = 201 bits (511), Expect = 1e-52
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60
MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK
Sbjct: 1 MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60
Query: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97
IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS
Sbjct: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97
>gi|169168771 PREDICTED: hypothetical protein LOC100130890 isoform
1 [Homo sapiens]
Length = 97
Score = 201 bits (511), Expect = 1e-52
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60
MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK
Sbjct: 1 MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60
Query: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97
IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS
Sbjct: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97
>gi|169169260 PREDICTED: hypothetical protein LOC100130890 isoform
1 [Homo sapiens]
Length = 97
Score = 201 bits (511), Expect = 1e-52
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60
MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK
Sbjct: 1 MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60
Query: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97
IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS
Sbjct: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97
>gi|163965377 putative thiosulfate sulfurtransferase KAT isoform 1
[Homo sapiens]
Length = 115
Score = 43.5 bits (101), Expect = 4e-05
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 30 VTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPLDEVGEALQMNPRDFKEKYNE 89
V+ EL++LL S L DVR E IP ++N+P+ E+ ALQM P F+ Y+
Sbjct: 7 VSLPELRSLLASGRARLFDVRSREEAAA-GTIPGALNIPVSELESALQMEPAAFQALYSA 65
Query: 90 VKPSKSD 96
KP D
Sbjct: 66 EKPKLED 72
>gi|163965371 putative thiosulfate sulfurtransferase KAT isoform 3
[Homo sapiens]
Length = 109
Score = 43.5 bits (101), Expect = 4e-05
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 30 VTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPLDEVGEALQMNPRDFKEKYNE 89
V+ EL++LL S L DVR E IP ++N+P+ E+ ALQM P F+ Y+
Sbjct: 7 VSLPELRSLLASGRARLFDVRSREEAAA-GTIPGALNIPVSELESALQMEPAAFQALYSA 65
Query: 90 VKPSKSD 96
KP D
Sbjct: 66 EKPKLED 72
>gi|17402865 thiosulfate sulfurtransferase [Homo sapiens]
Length = 297
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 31 TYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPLDEVGEALQMNPRDF 83
TY+++ L SK L+D R L + P+++ + + A+ M DF
Sbjct: 164 TYEQVLENLESKRFQLVDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDF 216
>gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Homo
sapiens]
Length = 544
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 15 IKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPL---DE 71
I+ +C I+KDVT+ ++ + + I+L+D LEY+K ++ + ++
Sbjct: 208 IEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLD-----SSLEYKKGESQTDIEITREED 262
Query: 72 VGEALQMNPRDFKEKYNEVKPSKSD 96
LQM ++ ++ K D
Sbjct: 263 FTRILQMEEEYIQQLCEDIIQLKPD 287
>gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Homo
sapiens]
Length = 507
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 15 IKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPL---DE 71
I+ +C I+KDVT+ ++ + + I+L+D LEY+K ++ + ++
Sbjct: 171 IEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLD-----SSLEYKKGESQTDIEITREED 225
Query: 72 VGEALQMNPRDFKEKYNEVKPSKSD 96
LQM ++ ++ K D
Sbjct: 226 FTRILQMEEEYIQQLCEDIIQLKPD 250
>gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Homo
sapiens]
Length = 545
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 15 IKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPL---DE 71
I+ +C I+KDVT+ ++ + + I+L+D LEY+K ++ + ++
Sbjct: 209 IEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLD-----SSLEYKKGESQTDIEITREED 263
Query: 72 VGEALQMNPRDFKEKYNEVKPSKSD 96
LQM ++ ++ K D
Sbjct: 264 FTRILQMEEEYIQQLCEDIIQLKPD 288
>gi|122937388 MAX gene associated [Homo sapiens]
Length = 3114
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 4 EKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKN-------IMLIDVREIWEIL 56
E+C EG ++K + H+ T D YK++ ++N + +++VR I E
Sbjct: 2083 EECLPEEGCATVKPSEHSCITGSHTDQDYKDVNEEYGARNRKSSKEKVAVLEVRTISEKA 2142
Query: 57 EYQKIPESINVPLDEVGE 74
+ + V ++G+
Sbjct: 2143 SNKTVQNLSKVQHQKLGD 2160
>gi|61563742 hect domain and RLD 6 [Homo sapiens]
Length = 1022
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 53 WEILEYQKIPESINVPLDEVGEALQMNPRDFKEKY 87
W+ + IP I++P+D Q N RD+ KY
Sbjct: 831 WDQNDVDLIPNGISIPVD------QTNKRDYVSKY 859
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,565,574
Number of Sequences: 37866
Number of extensions: 127310
Number of successful extensions: 273
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 11
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.