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Search of human proteins with 169165719
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169165719 PREDICTED: hypothetical protein [Homo sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165719 PREDICTED: hypothetical protein [Homo sapiens] 323 3e-89
gi|169166115 PREDICTED: hypothetical protein [Homo sapiens] 86 1e-17
gi|169165309 PREDICTED: hypothetical protein [Homo sapiens] 86 1e-17
gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo ... 31 0.48
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens] 30 0.63
gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo ... 30 0.63
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 29 1.4
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 28 3.1
gi|24041035 notch 2 preproprotein [Homo sapiens] 28 4.1
gi|4505423 nephroblastoma overexpressed precursor [Homo sapiens] 28 4.1
gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo ... 27 5.3
gi|239508997 PREDICTED: hypothetical protein [Homo sapiens] 27 5.3
gi|4505651 phosphate cytidylyltransferase 2, ethanolamine [Homo ... 27 5.3
gi|45267839 mesoderm induction early response 1, family member 2... 27 5.3
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 27 6.9
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 27 6.9
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 27 6.9
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 27 6.9
gi|169201831 PREDICTED: hypothetical protein [Homo sapiens] 27 9.1
gi|169201477 PREDICTED: hypothetical protein [Homo sapiens] 27 9.1
gi|113421750 PREDICTED: hypothetical protein [Homo sapiens] 27 9.1
>gi|169165719 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 323 bits (829), Expect = 3e-89
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRVASNGRGAAANCL 60
MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRVASNGRGAAANCL
Sbjct: 1 MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRVASNGRGAAANCL 60
Query: 61 RPYLAPWPNCPAPRDWVGVTRLPRVLPGSYVSLRFIPFKETWGTRGGCGCSRRPSSAPSK 120
RPYLAPWPNCPAPRDWVGVTRLPRVLPGSYVSLRFIPFKETWGTRGGCGCSRRPSSAPSK
Sbjct: 61 RPYLAPWPNCPAPRDWVGVTRLPRVLPGSYVSLRFIPFKETWGTRGGCGCSRRPSSAPSK 120
Query: 121 DVPALCLASYCGSLFVIHLKGEGKVRKVSLLGKR 154
DVPALCLASYCGSLFVIHLKGEGKVRKVSLLGKR
Sbjct: 121 DVPALCLASYCGSLFVIHLKGEGKVRKVSLLGKR 154
>gi|169166115 PREDICTED: hypothetical protein [Homo sapiens]
Length = 283
Score = 85.9 bits (211), Expect = 1e-17
Identities = 43/45 (95%), Positives = 43/45 (95%)
Query: 1 MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSGWG 45
MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVS G
Sbjct: 219 MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSVLG 263
>gi|169165309 PREDICTED: hypothetical protein [Homo sapiens]
Length = 283
Score = 85.9 bits (211), Expect = 1e-17
Identities = 43/45 (95%), Positives = 43/45 (95%)
Query: 1 MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSGWG 45
MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVS G
Sbjct: 219 MRVVSPVFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSVLG 263
>gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo
sapiens]
Length = 709
Score = 30.8 bits (68), Expect = 0.48
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 33 SPGEVVLPVSGWGLRVASNGRGAAANCLRPYLAPWPNCPAPRDWVG 78
SPG+ P+ GW + ++A+ L L P+ PA R WVG
Sbjct: 283 SPGKSDAPLGGWLRALRGPREPSSAHTLGAPLGASPSPPAGRSWVG 328
>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 709
Score = 30.4 bits (67), Expect = 0.63
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 33 SPGEVVLPVSGWGLRVASNGRGAAANCLRPYLAPWPNCPAPRDWVG 78
SPG+ P+ GW + ++A+ L L P+ PA R WVG
Sbjct: 283 SPGKSDAPLRGWLRALRGPREPSSAHTLGAPLGASPSPPAGRSWVG 328
>gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo
sapiens]
Length = 709
Score = 30.4 bits (67), Expect = 0.63
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 33 SPGEVVLPVSGWGLRVASNGRGAAANCLRPYLAPWPNCPAPRDWVG 78
SPG+ P+ GW + ++A+ L L P+ PA R WVG
Sbjct: 283 SPGKSDAPLRGWLRALRGPREPSSAHTLGAPLGASPSPPAGRSWVG 328
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 29.3 bits (64), Expect = 1.4
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 19 YLPTYEESMRL--QQLSP---GEVVLPVSGWGLRVASNGRGAAANCLRPYLAP-WPNC-- 70
+LPT+ S LSP GE +PV W R +S A A L P +PN
Sbjct: 649 HLPTHLSSPARPPDNLSPEWGGEQGVPVPPWAHRQSSAVSSALA------LGPRYPNSRC 702
Query: 71 -PAPRDWVGVTRLPRVLPGSYVS 92
PAPR W G+ P GS +S
Sbjct: 703 SPAPRIWAGLCFFPGSAIGSALS 725
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 28.1 bits (61), Expect = 3.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 52 GRGAAANCLRPYLAPWPNCPAPRDWVGVTRLPRVLPGSYVSLR 94
GRGA+ P L P P P P V PR P S+V++R
Sbjct: 2014 GRGASEGPPAPAL-PCPGAPTPSPLPTVAAPPRRRPSSFVTVR 2055
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 27.7 bits (60), Expect = 4.1
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 59 CLRPYLAPWPNCPAPRDWV-GVTRLPRVLPGSYVSLRFIPFKETWGTRGGCGCSRRPSSA 117
C+ P CP+PRD G P GS R P+ G +A
Sbjct: 1357 CVHTASGPRCFCPSPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELYTA 1416
Query: 118 PSKDVPALCLASYC 131
P PA CL+ YC
Sbjct: 1417 PPSTPPATCLSQYC 1430
>gi|4505423 nephroblastoma overexpressed precursor [Homo sapiens]
Length = 357
Score = 27.7 bits (60), Expect = 4.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 54 GAAANCLRPYLAPWPNCPAPR 74
G C L P PNCPAPR
Sbjct: 139 GCVPRCQLDVLLPEPNCPAPR 159
>gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo
sapiens]
Length = 248
Score = 27.3 bits (59), Expect = 5.3
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 17/153 (11%)
Query: 7 VFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRVASNGRGAAANCLRPY-LA 65
V + LP EE+ E + Q+ G+ + G G A + A P
Sbjct: 57 VRVALPQVEELGRHDGGGEEAQAQEAGDGDERYILEGCGRARAGVPQTRAPGSPLPLGSV 116
Query: 66 PWPNC-----PAPRDWVGVTRLPRVLPGSYVSLRFIPFKETWGTRGGCGCSRRPSS---A 117
P P C P+P G R PG R +++ T G + R S+ A
Sbjct: 117 PDPRCDTASLPSP---AGGGRTSCWAPGKRSRTRRKSWRKVARTTAGHARTERLSALSRA 173
Query: 118 P--SKDVPALCL---ASYCGSLFVIHLKGEGKV 145
P ++ V ALC AS CG + HL+G G+V
Sbjct: 174 PRWARSVCALCSSTSASVCGRCSLEHLRGTGRV 206
>gi|239508997 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 27.3 bits (59), Expect = 5.3
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 17/153 (11%)
Query: 7 VFLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRVASNGRGAAANCLRPY-LA 65
V + LP EE+ E + Q+ G+ + G G A + A P
Sbjct: 57 VRVALPQVEELGRHDGGGEEAQAQEAGDGDERYILEGCGRARAGVPQTRAPGSPLPLGSV 116
Query: 66 PWPNC-----PAPRDWVGVTRLPRVLPGSYVSLRFIPFKETWGTRGGCGCSRRPSS---A 117
P P C P+P G R PG R +++ T G + R S+ A
Sbjct: 117 PDPRCDTASLPSP---AGGGRTSCWAPGKRSRTRRKSWRKVARTTAGHARTERLSALSRA 173
Query: 118 P--SKDVPALCL---ASYCGSLFVIHLKGEGKV 145
P ++ V ALC AS CG + HL+G G+V
Sbjct: 174 PRWARSVCALCSSTSASVCGRCSLEHLRGTGRV 206
>gi|4505651 phosphate cytidylyltransferase 2, ethanolamine [Homo
sapiens]
Length = 389
Score = 27.3 bits (59), Expect = 5.3
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 13 SYEEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRV--ASNGRGAAANCLRPYLAPWPNC 70
+YEEVK Y E R Q +S ++V G L V A + ++ R Y + C
Sbjct: 125 TYEEVKQAGRYRECKRTQGVSTTDLV----GRMLLVTKAHHSSQEMSSEYREYADSFGKC 180
Query: 71 PAPRD-WVGVTR 81
P R+ W GV++
Sbjct: 181 PGGRNPWTGVSQ 192
>gi|45267839 mesoderm induction early response 1, family member 2
[Homo sapiens]
Length = 545
Score = 27.3 bits (59), Expect = 5.3
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 30 QQLSPGEVVLPVSGWGLRVASNGRGAAANCLRPYLAPWPNCPAP 73
+ ++P +V L V+ +GL + P+LA P CPAP
Sbjct: 495 ETVAPAQVALSVTEFGL--------IGIGDVNPFLAAHPTCPAP 530
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 26.9 bits (58), Expect = 6.9
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 15 EEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRVASNGRG----AAANCLRPYLAPWPNC 70
E+V L EE M+++ L E+VLP+ G G G AA N P P P
Sbjct: 587 EDVIRLAQKEEEMKVKLLELQELVLPLVG-----NHEGHGKFLIAAQN---PADEPTPGA 638
Query: 71 PAPRD 75
PAP++
Sbjct: 639 PAPQE 643
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 26.9 bits (58), Expect = 6.9
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 15 EEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRVASNGRG----AAANCLRPYLAPWPNC 70
E+V L EE M+++ L E+VLP+ G G G AA N P P P
Sbjct: 587 EDVIRLAQKEEEMKVKLLELQELVLPLVG-----NHEGHGKFLIAAQN---PADEPTPGA 638
Query: 71 PAPRD 75
PAP++
Sbjct: 639 PAPQE 643
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 26.9 bits (58), Expect = 6.9
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 15 EEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRVASNGRG----AAANCLRPYLAPWPNC 70
E+V L EE M+++ L E+VLP+ G G G AA N P P P
Sbjct: 587 EDVIRLAQKEEEMKVKLLELQELVLPLVG-----NHEGHGKFLIAAQN---PADEPTPGA 638
Query: 71 PAPRD 75
PAP++
Sbjct: 639 PAPQE 643
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 26.9 bits (58), Expect = 6.9
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 15 EEVKYLPTYEESMRLQQLSPGEVVLPVSGWGLRVASNGRG----AAANCLRPYLAPWPNC 70
E+V L EE M+++ L E+VLP+ G G G AA N P P P
Sbjct: 587 EDVIRLAQKEEEMKVKLLELQELVLPLVG-----NHEGHGKFLIAAQN---PADEPTPGA 638
Query: 71 PAPRD 75
PAP++
Sbjct: 639 PAPQE 643
>gi|169201831 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 26.6 bits (57), Expect = 9.1
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 8 FLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLP 40
FLQ+ +Y ++K+ PTY ++ +S E+ LP
Sbjct: 192 FLQVQNYLQIKFRPTY-----IKNVSCNEIFLP 219
>gi|169201477 PREDICTED: hypothetical protein [Homo sapiens]
Length = 132
Score = 26.6 bits (57), Expect = 9.1
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 8 FLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLP 40
FLQ+ +Y ++K+ PTY ++ +S E+ LP
Sbjct: 96 FLQVQNYLQIKFRPTY-----IKNVSCNEIFLP 123
>gi|113421750 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 26.6 bits (57), Expect = 9.1
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 8 FLQLPSYEEVKYLPTYEESMRLQQLSPGEVVLP 40
FLQ+ +Y ++K+ PTY ++ +S E+ LP
Sbjct: 192 FLQVQNYLQIKFRPTY-----IKNVSCNEIFLP 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,028,645
Number of Sequences: 37866
Number of extensions: 355762
Number of successful extensions: 835
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 21
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.