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Search of human proteins with 169163019
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 498 e-141
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 496 e-141
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 496 e-141
gi|110832843 TBP-associated factor 4 [Homo sapiens] 59 5e-09
gi|48762934 alpha 2 type I collagen [Homo sapiens] 56 3e-08
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 56 3e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 55 5e-08
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 54 9e-08
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 54 2e-07
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 54 2e-07
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 54 2e-07
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 53 3e-07
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 53 3e-07
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 53 3e-07
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 53 3e-07
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 52 4e-07
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 51 8e-07
gi|156415990 Y box binding protein 2 [Homo sapiens] 51 8e-07
gi|33286436 gametogenetin [Homo sapiens] 51 8e-07
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 51 1e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 51 1e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 50 1e-06
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 50 2e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 3e-06
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 49 3e-06
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 49 4e-06
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 49 5e-06
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 49 5e-06
gi|19924097 synapsin I isoform Ib [Homo sapiens] 49 5e-06
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 49 5e-06
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 498 bits (1283), Expect = e-141
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS
Sbjct: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
Query: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA
Sbjct: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
Query: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTT 180
PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTT
Sbjct: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTT 180
Query: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA
Sbjct: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 496 bits (1276), Expect = e-141
Identities = 236/237 (99%), Positives = 236/237 (99%)
Query: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS
Sbjct: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
Query: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA
Sbjct: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
Query: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTT 180
PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG SGWSHGHTARVGGTGDSSAGLTT
Sbjct: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTT 180
Query: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA
Sbjct: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 496 bits (1276), Expect = e-141
Identities = 236/237 (99%), Positives = 236/237 (99%)
Query: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS
Sbjct: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
Query: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA
Sbjct: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
Query: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTT 180
PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG SGWSHGHTARVGGTGDSSAGLTT
Sbjct: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTT 180
Query: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA
Sbjct: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 58.5 bits (140), Expect = 5e-09
Identities = 73/244 (29%), Positives = 91/244 (37%), Gaps = 54/244 (22%)
Query: 16 GTPLYPRARGPAI---ASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSP----------A 62
G+P GPA + G + P P GRAR G GP+ P P
Sbjct: 65 GSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGG------GPQRPGPPSPRRPLVPAG 118
Query: 63 PALPA-RARPPRENRKRA---VPARAA--RGPPKRPAG-GQTGGVEAASGEERSQPRRPR 115
PA PA + RPP E + VPA AA GP PAG + G A + P
Sbjct: 119 PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP 178
Query: 116 RPPPAPRRPRPA-PGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDS 174
P P P +PA PG ++L +A LL H V +
Sbjct: 179 GPGPGPGPGKPAGPGAAQTLNGSAALLNSH-----------------HAAAPAVSLVNNG 221
Query: 175 SAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTY-SPRSDPRDPAAPRAGPEA 233
A L P + G + P + + PPAP SP + P PAAP A P
Sbjct: 222 PAALLPLPKPAAPGTV--------IQTPPFVGAAAPPAPAAPSPPAAPA-PAAPAAAPPP 272
Query: 234 PPPA 237
PPPA
Sbjct: 273 PPPA 276
Score = 37.4 bits (85), Expect = 0.011
Identities = 36/105 (34%), Positives = 38/105 (36%), Gaps = 30/105 (28%)
Query: 56 PRAPSP----APALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP 111
P APSP APA PA A PP PA AR PP PAG
Sbjct: 252 PAAPSPPAAPAPAAPAAAPPPPP----PAPATLAR-PPGHPAGP---------------- 290
Query: 112 RRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG 156
P AP P PA + AAP GG +G G G
Sbjct: 291 -----PTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPG 330
Score = 35.4 bits (80), Expect = 0.043
Identities = 39/130 (30%), Positives = 46/130 (35%), Gaps = 24/130 (18%)
Query: 18 PLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRK 77
P A PA A+ P+P A P P PAPA ARPP
Sbjct: 242 PFVGAAAPPAPAAPSPPAAPAPAAPAA----------APPPPPPAPA--TLARPP--GHP 287
Query: 78 RAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR----RPPPAPRRPRPAPGRR-- 131
P A PP PA Q GG A+ P +P P PAPG +
Sbjct: 288 AGPPTAAPAVPP--PAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAE 345
Query: 132 --KSLYEAAP 139
K + +AAP
Sbjct: 346 SPKRVVQAAP 355
Score = 33.1 bits (74), Expect = 0.22
Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 24/127 (18%)
Query: 16 GTPLYPRARGPAI---------ASAGYSRPPSPV--GRARRRGTWLRVLRGPRAPSPAPA 64
G P P PA+ SAG + P+P G A G GP A + APA
Sbjct: 285 GHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQ-----PGPGAAAAAPA 339
Query: 65 LPARARPPRENRKRAVPAR---AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAP 121
+A P+ + A PA AA GP A G + + P PPPAP
Sbjct: 340 PGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPT-----MQGALPSPAAVPPPAP 394
Query: 122 RRPRPAP 128
P P
Sbjct: 395 GTPTGLP 401
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 55.8 bits (133), Expect = 3e-08
Identities = 71/231 (30%), Positives = 84/231 (36%), Gaps = 14/231 (6%)
Query: 13 GQWGTPLYPRARGPA--IASAGYSRPPSPVGRARRRGTWLRV-LRGPRAPSPAPALPARA 69
G+ G P A GP I S G S PP P G G V GP PS P A
Sbjct: 589 GERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAA 648
Query: 70 RPPRENRKRAVPA-RAARGPPKRP-AGGQTGGVEAA--SGEERSQPRRPRRPPPAPRRPR 125
P ++ P R G P R A G G V A +G + P P PR
Sbjct: 649 GIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPR 708
Query: 126 PAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSG--WSHGHTARVGGTGDSSAGLTTFPG 183
+PG R + A P G +G+ G +G+ G G VG TG A P
Sbjct: 709 GSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPN 768
Query: 184 SSRG--GFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPE 232
G G G P + R+ PP P S S P P P AG E
Sbjct: 769 GPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP--SGISGPPGPPGP-AGKE 816
Score = 45.8 bits (107), Expect = 3e-05
Identities = 71/267 (26%), Positives = 89/267 (33%), Gaps = 47/267 (17%)
Query: 11 LGGQWGTPLYPRARGPA-----IASAGYSRPPSPVGRARRRGTWLRV-LRGPRAPSPAPA 64
L G G P P GPA + G P P+G A RG + GP+ P+ P
Sbjct: 446 LMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPG 505
Query: 65 ----------LPARARP-PRENRKRAVP--------ARAARGPPKRPAGGQTGGVEAASG 105
AR P P N P + +GPP P G +G
Sbjct: 506 KNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAG 565
Query: 106 E-----ERSQPRRPRRPPPA-PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSG 159
E ER P PA PR R PG + P+ +R G G G++G+ G
Sbjct: 566 EVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPG 625
Query: 160 WSHGHTARVGGTGDS----SAGLTTFPG----SSRGGFSGREEEPRRE--RRQPSLQRST 209
G G +G S G PG G G P R+ R P +
Sbjct: 626 -VVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAP 684
Query: 210 PPAPTYSPRSD-----PRDPAAPRAGP 231
PA R + P PA PR P
Sbjct: 685 GPAGATGDRGEAGAAGPAGPAGPRGSP 711
Score = 40.0 bits (92), Expect = 0.002
Identities = 60/230 (26%), Positives = 75/230 (32%), Gaps = 33/230 (14%)
Query: 13 GQWGTPLYPRARGP-----AIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA 67
G G P +P A GP A+ +AG + P P G G L GP P P
Sbjct: 250 GSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPG-----LSGPVGPPGNPGANG 304
Query: 68 RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPA 127
K A G P P G A+G + R P P +
Sbjct: 305 LT-----GAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGA---RGLVGEPGPAGSKGE 356
Query: 128 PGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGS-SR 186
G + A P G G+RG G++G S G G G S G PG+ R
Sbjct: 357 SGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAG-SAGPPGPPGLRG--SPGSRGLPGADGR 413
Query: 187 GGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAP-RAGPEAPP 235
G G P + ++ PA P D P P GP P
Sbjct: 414 AGVMG----------PPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLP 453
Score = 32.7 bits (73), Expect = 0.28
Identities = 47/169 (27%), Positives = 59/169 (34%), Gaps = 14/169 (8%)
Query: 23 ARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA----RARPPRENR 76
ARGPA AG P GR RG + +G R P LP R +
Sbjct: 131 ARGPAGPPGKAGEDGHPGKPGRPGERG--VVGPQGARGFPGTPGLPGFKGIRGHNGLDGL 188
Query: 77 KRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYE 136
K A +G P P T G A G R R P P R + G +
Sbjct: 189 KGQPGAPGVKGEPGAPGENGTPGQTGARG---LPGERGRVGAPGPAGARGSDGSVGPVGP 245
Query: 137 AAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSS 185
A P+ + G G G +G+ G + G+ G G G PG S
Sbjct: 246 AGPIGSAGPPGFPGAPGPKGEIG-AVGNAGPAGPAG--PRGEVGLPGLS 291
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 55.8 bits (133), Expect = 3e-08
Identities = 57/196 (29%), Positives = 72/196 (36%), Gaps = 39/196 (19%)
Query: 23 ARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRA--------PSPAPALPARARPPRE 74
AR P A+A + PPSP G A+ GPRA P PAPA P PP
Sbjct: 146 ARAPRAAAAAATAPPSP-GPAQP---------GPRAQRAAPLAAPPPAPAAPPAVAPPAG 195
Query: 75 NRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSL 134
R+ PA AAR PP P + P + ++PPP +P P G ++
Sbjct: 196 PRRAPPPAVAAREPPLPPP------------PQPPAPPQQQQPPPPQPQPPPEGGAVRAG 243
Query: 135 YEAAPLLTRE-------KGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRG 187
A P+ RE GG GR G A G + G P R
Sbjct: 244 GAARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRP 303
Query: 188 GFS--GREEEPRRERR 201
G + P R +R
Sbjct: 304 GRAPPAASARPSRSKR 319
Score = 38.5 bits (88), Expect = 0.005
Identities = 48/171 (28%), Positives = 58/171 (33%), Gaps = 64/171 (37%)
Query: 67 ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
AR +PPR P RA RG P A+ + P P PPP P
Sbjct: 97 ARVQPPRRGATPPAPPRAPRGAP-------------AAAAAAAPPPTPAPPPP------P 137
Query: 127 APGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSR 186
AP + AAP AR ++A PG ++
Sbjct: 138 AP-----VAAAAP--------------------------ARAPRAAAAAATAPPSPGPAQ 166
Query: 187 GGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
G PR +R P + PPAP P P PA PR APPPA
Sbjct: 167 PG-------PRAQRAAPLA--APPPAPAAPPAVAP--PAGPR---RAPPPA 203
Score = 37.7 bits (86), Expect = 0.009
Identities = 37/116 (31%), Positives = 42/116 (36%), Gaps = 27/116 (23%)
Query: 18 PLYPRA-RGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENR 76
P PRA RG A+A + PP+P AP P PA A A P R R
Sbjct: 109 PAPPRAPRGAPAAAAAAAPPPTP------------------APPPPPAPVAAAAPARAPR 150
Query: 77 KRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPP----PAPRRPRPAP 128
A A A P P Q G + + P P PP PA R P P
Sbjct: 151 AAAAAATA----PPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPP 202
Score = 37.4 bits (85), Expect = 0.011
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 56 PRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR 115
PRAP APA A A PP P A PP A A+ + P P
Sbjct: 112 PRAPRGAPAAAAAAAPP--------PTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPG 163
Query: 116 RPPPAPRRPRPAPGRRKSLYEAAP 139
P PR R AP AAP
Sbjct: 164 PAQPGPRAQRAAPLAAPPPAPAAP 187
Score = 33.9 bits (76), Expect = 0.13
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDP--RDPAAPRAGPEAPPP 236
R + G R QP + +TPPAP +PR P AAP P PPP
Sbjct: 84 RVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPP 136
Score = 32.7 bits (73), Expect = 0.28
Identities = 30/97 (30%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPS--PAPALPARARPPRENRKRAVPARAARGPPKRPA 93
PP+P R P P+ P PA A A P R R A A A P P
Sbjct: 108 PPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATA----PPSPG 163
Query: 94 GGQTGGVEAASGEERSQPRRPRRPPPA--PRRPRPAP 128
Q G + + P P PP P PR AP
Sbjct: 164 PAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAP 200
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 55.1 bits (131), Expect = 5e-08
Identities = 64/234 (27%), Positives = 85/234 (36%), Gaps = 55/234 (23%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPA-LPARARPPRE 74
G P P +G A + PPSP G GP PSP A +P A PP
Sbjct: 1069 GGPATPSLKGAPTPPA--ATPPSPKG-------------GPATPSPKGAPMPPAATPPSP 1113
Query: 75 NRKRAVPARAARGPPKRPAG---GQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRR 131
A P +G P PA GG+ A+ + P P PP+P+ P +
Sbjct: 1114 KGGLATPPH--KGAPTTPAATPPSPKGGL--ATPPPKGAPTTPAATPPSPKGGLATPPPK 1169
Query: 132 KSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSG 191
+ A KGG + T G + A P S +GG +
Sbjct: 1170 GAPTTPAATPPSPKGGLA---------------TPSPKGAPTTPAAT---PPSPKGGLAT 1211
Query: 192 REEEPRRERRQPSLQRSTPPAP-----TYSPRSDPRDPAA----PRAGPEAPPP 236
+ P+ +TPP+P T SP+ P PAA P+ GP PPP
Sbjct: 1212 PSP-----KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPP 1260
Score = 44.7 bits (104), Expect = 7e-05
Identities = 58/232 (25%), Positives = 76/232 (32%), Gaps = 49/232 (21%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSP--APALPARARPPR 73
G P P +G A + PPSP G GP PSP AP PA P
Sbjct: 975 GGPATPSPKGAPTPPA--ATPPSPKG-------------GPATPSPKGAPTPPAVTPPSP 1019
Query: 74 ENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKS 133
+ A P P G AA+ + P P P+P+ P + +
Sbjct: 1020 KGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGA 1079
Query: 134 LYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGRE 193
A KGG + T G A P S +GG +
Sbjct: 1080 PTPPAATPPSPKGGPA---------------TPSPKGAPMPPAAT---PPSPKGGLA--- 1118
Query: 194 EEPRRERRQPSLQRSTPPAP-----TYSPRSDPRDPAA----PRAGPEAPPP 236
+ P+ +TPP+P T P+ P PAA P+ G PPP
Sbjct: 1119 --TPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPP 1168
Score = 41.6 bits (96), Expect = 6e-04
Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 19/195 (9%)
Query: 56 PRAPSP--APALPARARPPRENRKRAVPA-RAARGPPKRPAGGQTGGVEAASGEERSQPR 112
P +PSP AP PA A PP A P+ + A PP GG A+ + P
Sbjct: 931 PASPSPKGAPTPPA-ATPPSPKGGPATPSPKWAPTPPAATPPSPKGG--PATPSPKGAPT 987
Query: 113 RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTG 172
P PP+P+ P + + A KG + +G S G+
Sbjct: 988 PPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSP 1047
Query: 173 DSS---AGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAP-----TYSPRSDPRDP 224
++ G T P ++ G P + P+ +TPP+P T SP+ P P
Sbjct: 1048 AATPLPKGAPTTPAATLPSPKGGPATPSL-KGAPTPPAATPPSPKGGPATPSPKGAPMPP 1106
Query: 225 AA----PRAGPEAPP 235
AA P+ G PP
Sbjct: 1107 AATPPSPKGGLATPP 1121
Score = 41.6 bits (96), Expect = 6e-04
Identities = 61/228 (26%), Positives = 75/228 (32%), Gaps = 29/228 (12%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRA-PSP--APALPARARPP 72
G P P A P+ G PSP G +G A PSP AP PA P
Sbjct: 1193 GAPTTPAATPPS--PKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPS 1250
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRK 132
+ P + A PP GG+ + P + P P P G
Sbjct: 1251 PKGGPATPPPKGAPTPPAATPPSLKGGL-------ATPPHKGAPNPAVVTPPSPKGGPAT 1303
Query: 133 SLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPG---SSRGGF 189
S + AP T +G G G T S G T P SS+GG
Sbjct: 1304 SPPKGAP--TPPAATPPSPKGSPGTPP-PKGAPTPPAVTPPSPKGTPTLPATTPSSKGG- 1359
Query: 190 SGREEEPRRERRQPSLQRSTPPAPTYSPRSDP-RDPAAPRAGPEAPPP 236
S + TPPA T S + P P +P+ GP P P
Sbjct: 1360 ---------PTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSP 1398
Score = 35.8 bits (81), Expect = 0.033
Identities = 47/208 (22%), Positives = 72/208 (34%), Gaps = 33/208 (15%)
Query: 55 GPRAPSP--APALPARARPPRENRKRAVP-----ARAARGPPKRPAG---GQTGGVEAAS 104
GP P+P APAL + P++ R P + + +G P PA GG A+
Sbjct: 899 GPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGG--PAT 956
Query: 105 GEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGH 164
+ P P PP+P+ P + + A KGG + +
Sbjct: 957 PSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTP----- 1011
Query: 165 TARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQR---STPPAPTYSPRSDP 221
A + S T FP + + P+ L + +TP A SP+ P
Sbjct: 1012 PAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGP 1071
Query: 222 RDPA-------------APRAGPEAPPP 236
P+ +P+ GP P P
Sbjct: 1072 ATPSLKGAPTPPAATPPSPKGGPATPSP 1099
Score = 35.8 bits (81), Expect = 0.033
Identities = 52/233 (22%), Positives = 75/233 (32%), Gaps = 35/233 (15%)
Query: 11 LGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSP--APALPAR 68
L G TP + A PA+ + PPSP G GP P AP PA
Sbjct: 1274 LKGGLATPPHKGAPNPAVVT-----PPSPKG-------------GPATSPPKGAPTPPAA 1315
Query: 69 ARPPRENRKRAVPARAARGPPK--RPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
P + P + A PP P+ T + A + + P P + P
Sbjct: 1316 TPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSS------KEGP 1369
Query: 127 APGRRKSLYEAAPLLTREKGGRS----GRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFP 182
P ++ P +T R +GD + T + G T
Sbjct: 1370 TPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAAT-- 1427
Query: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
S+G + P ++ P+ T S + DP PA P+ PP
Sbjct: 1428 -PSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPP 1479
Score = 33.9 bits (76), Expect = 0.13
Identities = 45/222 (20%), Positives = 71/222 (31%), Gaps = 38/222 (17%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G + P+ + P G + P +P+G L P +P A LP + + +
Sbjct: 798 GVSVSPQTKRPP-TKKGSAGPDTPIGN----------LSSPVSPVEASFLPENSLSFQGS 846
Query: 76 RKRAVPARAARGPPKRPAGGQT-GGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSL 134
+ PA P P G T V S + + P + P P P G
Sbjct: 847 KDS--PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPA 904
Query: 135 YEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREE 194
+ AP L+ R G + + T ++ P S +GG
Sbjct: 905 PKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAAT-----PPSPKGG------ 953
Query: 195 EPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
P+P ++P P +P+ GP P P
Sbjct: 954 -------------PATPSPKWAPTPPAATPPSPKGGPATPSP 982
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 54.3 bits (129), Expect = 9e-08
Identities = 74/244 (30%), Positives = 90/244 (36%), Gaps = 43/244 (17%)
Query: 18 PLYPRARGPAIASAGYSRPPS---PVGRARRRGTWLRVLRGPRAPSPAPALPARAR-PPR 73
P+ R RGP +G PP P+G RG L+ RG P P L R PP
Sbjct: 1972 PVPERRRGPK-GDSGEQGPPGKEGPIGFPGERG--LKGDRGDPGPQGPPGLALGERGPPG 2028
Query: 74 ENRKRAVPARAA-RGPPKRPAGGQTGGVEAASGEERSQPRRPRR----PPPAPRRPRPA- 127
+ P + G P R G G GE + R + PP P P P
Sbjct: 2029 PSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPG 2088
Query: 128 -PGRRKSLYEAAPLLTREKG--------------GRSGRRGDRGDSGWSHGHTARVGGTG 172
PG + S+ E P L+ E+G G G +GDRG G G G G
Sbjct: 2089 PPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIK-GDRGEPGPRG 2147
Query: 173 -DSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAP-RAG 230
D + GL PG G +G E +P LQ P DP P AP AG
Sbjct: 2148 QDGNPGL---PGER--GMAGPEGKP-------GLQGPRGPPGPVGGHGDPGPPGAPGLAG 2195
Query: 231 PEAP 234
P P
Sbjct: 2196 PAGP 2199
Score = 47.0 bits (110), Expect = 1e-05
Identities = 57/193 (29%), Positives = 67/193 (34%), Gaps = 38/193 (19%)
Query: 13 GQWGTPLYPRARGPAIASA-----GYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA 67
GQ G P P RG A G PP PVG G P AP L
Sbjct: 2147 GQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGG-----------HGDPGPPGAPGLAG 2195
Query: 68 RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRR---P 124
A P + + P GPP R G TG V PP P P
Sbjct: 2196 PAGPQGPSGLKGEPGET--GPPGRGLTGPTGAVGLPG-------------PPGPSGLVGP 2240
Query: 125 RPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSG--WSHGHTARVGGTGDSSAGLTTFP 182
+ +PG + E + G SG+ GDRG G S G VG G+ G T P
Sbjct: 2241 QGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGE--PGPTGAP 2298
Query: 183 GSSRGGFSGREEE 195
G + G G + E
Sbjct: 2299 GQAVVGLPGAKGE 2311
Score = 43.5 bits (101), Expect = 2e-04
Identities = 58/205 (28%), Positives = 72/205 (35%), Gaps = 45/205 (21%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGR-------ARRRGT-WLRVLRGPRAPSPAPA 64
G+ G P + GP G PP P GR AR +G R GPR P P
Sbjct: 1679 GEDGRNGSPGSSGPK-GDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPG 1737
Query: 65 LPARAR---------PPRENRKRAVPARAA----RGPPK---------RPAGGQTGGVEA 102
LP PP V A RGPP +P G
Sbjct: 1738 LPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNG 1797
Query: 103 ASGEERSQPR------RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKG-----GRSGR 151
A+G+ R R + P P P PG+ + P L + G G GR
Sbjct: 1798 AAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGE--DGKPGLNGKNGEPGDPGEDGR 1855
Query: 152 RGDRGDSGWSHGHTARVGGTGDSSA 176
+G++GDSG S G R G G+ A
Sbjct: 1856 KGEKGDSGAS-GREGRDGPKGERGA 1879
Score = 42.7 bits (99), Expect = 3e-04
Identities = 69/265 (26%), Positives = 87/265 (32%), Gaps = 64/265 (24%)
Query: 11 LGGQWGTPLYPRARGP--AIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPAR 68
L GQ G+P RGP AI G P P+G A +G RGP P+ + LP
Sbjct: 1457 LPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGE-----RGPPGPAGSRGLPGV 1511
Query: 69 ARPPRENRKRAVPARAAR----GPPKRPAG------------GQTGGVEAASGEERSQPR 112
A P P R G P RP G+ G V A + +
Sbjct: 1512 AGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQ 1571
Query: 113 RPRRPP----PAPRRPRPAPGRRKSLY------------------------EAAPLLTRE 144
R PP P P+ PG R + P+ R
Sbjct: 1572 GERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRG 1631
Query: 145 KGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRG--GFSGREEEPRRERRQ 202
+ G G +GD G G G + G GL PG RG G G + +P + R
Sbjct: 1632 RDGEVGEKGDEGPPG-DPGLPGKAG-----ERGLRGAPG-VRGPVGEKGDQGDPGEDGRN 1684
Query: 203 PSLQRSTPPAPTYSPRSDPRDPAAP 227
S S P R +P P P
Sbjct: 1685 GSPGSSGPK----GDRGEPGPPGPP 1705
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/178 (29%), Positives = 68/178 (38%), Gaps = 20/178 (11%)
Query: 11 LGGQWGTPLYPRARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPAR 68
L G+ G P A GP+ +AG + P G RG + L GP P P P
Sbjct: 1777 LDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGE--QGLPGPSGPPGLPGKPGE 1834
Query: 69 ARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPP--APRRPRP 126
P N K P P + G+ G A+ E R P+ R P P+ P
Sbjct: 1835 DGKPGLNGKNGEPG----DPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPG 1890
Query: 127 APGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGS 184
PG + P + G +G +GDRG++G S G G GL PGS
Sbjct: 1891 LPGPVGPPGQGFPGVP----GGTGPKGDRGETG-SKGEQGLPG-----ERGLRGEPGS 1938
Score = 36.6 bits (83), Expect = 0.019
Identities = 59/233 (25%), Positives = 73/233 (31%), Gaps = 25/233 (10%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPP 72
G+ G P P GP PP P G L +GP A P
Sbjct: 2073 GRDGPPGLPGTPGPP-------GPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQ 2125
Query: 73 RENRKRAVPA-RAARGPP-KRPAGGQTG--GVEAASGEERSQPRRPRRPPPAPRRPRPAP 128
R VP + RG P R G G G +G E + R PP P P
Sbjct: 2126 GPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDP 2185
Query: 129 GRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWS-HGHTARVGGTGDSSAGLTTFPGSSRG 187
G + A P + G G G+ G G G T VG G P S G
Sbjct: 2186 GPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPG 2245
Query: 188 -----GFSGREEEPRR--------ERRQPSLQRSTPPAPTYSPRSDPRDPAAP 227
G +G+ P R +R P + S P+ +P AP
Sbjct: 2246 LPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAP 2298
Score = 35.4 bits (80), Expect = 0.043
Identities = 54/188 (28%), Positives = 59/188 (31%), Gaps = 37/188 (19%)
Query: 53 LRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPR 112
LRG P P LP R P +GPP G A G
Sbjct: 1264 LRGQVGPPGDPGLPGRTGAP-----------GPQGPPGSATAKGERGFPGADG------- 1305
Query: 113 RPRRPPPAPRRPRP-APGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGT 171
RP P A P APG + S P G G RG RG G +GG
Sbjct: 1306 RPGSPGRAGNPGTPGAPGLKGSPGLPGPR------GDPGERGPRGPKGEPGAPGQVIGGE 1359
Query: 172 GDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSD-----PRDPAA 226
G G PG S G G PR P R P P + + D R P
Sbjct: 1360 GPGLPGRKGDPGPS--GPPG----PRGPLGDPG-PRGPPGLPGTAMKGDKGDRGERGPPG 1412
Query: 227 PRAGPEAP 234
P G AP
Sbjct: 1413 PGEGGIAP 1420
Score = 34.3 bits (77), Expect = 0.097
Identities = 54/225 (24%), Positives = 70/225 (31%), Gaps = 22/225 (9%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPP 72
G G P P A G + G + P +G+ G RG P +P PP
Sbjct: 2389 GDLGLPGLPGAPG-VVGFPGQTGPRGEMGQPGPSGE-----RGLAGPPGREGIPGPLGPP 2442
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRK 132
P + K G G GE + R PR PG R
Sbjct: 2443 GPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRG 2502
Query: 133 SLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGD----SSAGLTTFPG----S 184
E + G +G +GD+GDS G G GD GL G +
Sbjct: 2503 ERGEKGDV------GSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDN 2556
Query: 185 SRGGFSGREEEP--RRERRQPSLQRSTPPAPTYSPRSDPRDPAAP 227
G G + EP + P L+ P P DP +P
Sbjct: 2557 GDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSP 2601
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 53.5 bits (127), Expect = 2e-07
Identities = 66/229 (28%), Positives = 88/229 (38%), Gaps = 35/229 (15%)
Query: 21 PRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAV 80
P A GPA G P P G A +RG + L G R P LP + P ++
Sbjct: 937 PGADGPA----GAPGTPGPQGIAGQRG--VVGLPGQRGERGFPGLPGPSGEP--GKQGPS 988
Query: 81 PARAARGPP--KRPAG-----GQTG-----GVEAASGEERSQPRRPRRPPPAPRRPRPAP 128
A RGPP P G G++G G E + G + S + R P P AP
Sbjct: 989 GASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048
Query: 129 GRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRG- 187
G + P G+SG RG+ G +G + G VG G + P RG
Sbjct: 1049 GAPGAPGPVGP------AGKSGDRGETGPAGPA-GPVGPVGARGPAG------PQGPRGD 1095
Query: 188 -GFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
G +G + + + + PP P SP A+ AGP PP
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP 1144
Score = 49.3 bits (116), Expect = 3e-06
Identities = 74/265 (27%), Positives = 86/265 (32%), Gaps = 51/265 (19%)
Query: 13 GQWGTPLYPRARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARAR 70
G+ G P P A GPA AG PP P G A RG +GP LP A
Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGE-----QGPAGSPGFQGLPGPAG 650
Query: 71 PPRENRK---RAVPA-------------------RAARGPP----KRPAGGQTG-----G 99
PP E K + VP R +GPP R A G G G
Sbjct: 651 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKG 710
Query: 100 VEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSG 159
A G SQ + P R PG + +A P G+ G RG G G
Sbjct: 711 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIG 770
Query: 160 WSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEE----------PRRERRQPSLQRST 209
G G G+S P +RG R E P QP +
Sbjct: 771 -PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG-AKGE 828
Query: 210 PPAPTYSPRSDPRDPAAPRAGPEAP 234
P + P PA P AGP P
Sbjct: 829 PGDAGAKGDAGPPGPAGP-AGPPGP 852
Score = 45.1 bits (105), Expect = 5e-05
Identities = 67/235 (28%), Positives = 81/235 (34%), Gaps = 33/235 (14%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRG-------TWLRVLRGPRAPSPAPALPAR 68
G P +P ARGP+ G PP P G + G T + GP P PA
Sbjct: 407 GAPGFPGARGPS-GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG-PAG 464
Query: 69 ARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAP 128
R R P GPP G + G A G + R P P P+ +P
Sbjct: 465 EEGKRGARGEPGPT-GLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSP 523
Query: 129 GRRKSLYEA----APLLTREKG--GRSGRRGDRGDSGWSHGHTARVGGTG-DSSAGLTTF 181
G EA A LT G G G+ G G +G G G G AG+ F
Sbjct: 524 GEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAG-QDGRPGPPGPPGARGQAGVMGF 582
Query: 182 PGSSRGGFSGREEEPRR--ERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAP 234
PG G EP + ER P + PA +D A GP P
Sbjct: 583 PGP-----KGAAGEPGKAGERGVPGPPGAVGPA--------GKDGEAGAQGPPGP 624
Score = 43.1 bits (100), Expect = 2e-04
Identities = 54/203 (26%), Positives = 71/203 (34%), Gaps = 22/203 (10%)
Query: 54 RGPRAPSPAPAL------PARARPPRENRKRAVPARAARGPPKRPAG---GQTGGVEAAS 104
RGPR P+ P P PP P P+ G TGG+
Sbjct: 120 RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPG 179
Query: 105 GEERSQPRRPRRPP--PAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSH 162
S PR PP P P+ + PG + P+ R G G+ GD G++G
Sbjct: 180 PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAG-KP 238
Query: 163 GHTARVGGTGDSSA----GLTTFPG-SSRGGFSGREEEPRRERRQPSLQRSTPPAPTYS- 216
G G G A G PG GFSG + + P+ + P +P +
Sbjct: 239 GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGL--DGAKGDAGPAGPKGEPGSPGENG 296
Query: 217 --PRSDPRDPAAPRAGPEAPPPA 237
+ PR R P AP PA
Sbjct: 297 APGQMGPRGLPGERGRPGAPGPA 319
Score = 41.6 bits (96), Expect = 6e-04
Identities = 59/226 (26%), Positives = 76/226 (33%), Gaps = 30/226 (13%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPS---PVGRARRRGTWLRVLRG---PRAPSPAPALP 66
G+ G P P RGP P + P + R + L +G P P P P
Sbjct: 233 GEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSP 292
Query: 67 ARARPPRENRKRAVPARAARGPPKRPAGGQ-TGGVEAASGEERSQPRRPRRPPPAPRRPR 125
P + R +P R PAG + G A+G P P P
Sbjct: 293 GENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG---------PTGPAGPP 343
Query: 126 PAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSG--WSHGHTARVGGTGDSSA-GLTTFP 182
PG + EA P R G G RG+ G G + G G G A G P
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 403
Query: 183 G-SSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAP 227
G + GF G R PS + P P+ + +P AP
Sbjct: 404 GIAGAPGFPG--------ARGPSGPQG--PGGPPGPKGNSGEPGAP 439
Score = 35.8 bits (81), Expect = 0.033
Identities = 62/215 (28%), Positives = 74/215 (34%), Gaps = 37/215 (17%)
Query: 32 GYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAA--RGPP 89
G + P P G A G +G PS PA P AR +R P A GPP
Sbjct: 764 GLTGPIGPPGPAGAPGD-----KGESGPS-GPAGPTGARGAPGDRGEPGPPGPAGFAGPP 817
Query: 90 KRPAGGQTG-----GVEAASGEERSQPRRPRRP--PPAPRRPRPAPGRRKSLYEAAPLLT 142
A GQ G G A G+ + P P P PP P APG + + A P
Sbjct: 818 G--ADGQPGAKGEPGDAGAKGD--AGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGA 873
Query: 143 REKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPG-SSRGGFSGREEEPRRERR 201
G +GR G G SG +AG PG + + G G E R
Sbjct: 874 TGFPGAAGRVGPPGPSG---------------NAGPPGPPGPAGKEGGKGPRGETGPAGR 918
Query: 202 QPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
+ PP P S D P P P P
Sbjct: 919 PGEVGPPGPPGPAGEKGSPGAD--GPAGAPGTPGP 951
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 53.5 bits (127), Expect = 2e-07
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 23 ARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPAR----ARPPRENR 76
ARGPA +ASAG G R GTW G R ALP+R A P E
Sbjct: 53 ARGPAPLLASAG--------GGRARDGTW-----GVRTKGSGAALPSRPASRAAPRPEAS 99
Query: 77 KRAVPARAARGPPKRPAGGQTGGVEAASG-EERSQPRRPRRPPPAPRRPRPAPGRRKSLY 135
+P ARG P GG+ G A G +RS+ R R + +R + + R+ +
Sbjct: 100 SPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS--RKDTSR 157
Query: 136 EAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEE 195
+ ++E+ + RR R S S ++ + SS+ ++ RG + + +
Sbjct: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 217
Query: 196 PRRERRQ 202
+++R++
Sbjct: 218 KKKKRKK 224
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 53.5 bits (127), Expect = 2e-07
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 23 ARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPAR----ARPPRENR 76
ARGPA +ASAG G R GTW G R ALP+R A P E
Sbjct: 53 ARGPAPLLASAG--------GGRARDGTW-----GVRTKGSGAALPSRPASRAAPRPEAS 99
Query: 77 KRAVPARAARGPPKRPAGGQTGGVEAASG-EERSQPRRPRRPPPAPRRPRPAPGRRKSLY 135
+P ARG P GG+ G A G +RS+ R R + +R + + R+ +
Sbjct: 100 SPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS--RKDTSR 157
Query: 136 EAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEE 195
+ ++E+ + RR R S S ++ + SS+ ++ RG + + +
Sbjct: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 217
Query: 196 PRRERRQ 202
+++R++
Sbjct: 218 KKKKRKK 224
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 52.8 bits (125), Expect = 3e-07
Identities = 76/253 (30%), Positives = 93/253 (36%), Gaps = 53/253 (20%)
Query: 18 PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72
P +PR R P S + PP P + G+ LR P AP P P ARA P
Sbjct: 85 PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128
A P AAR P R A G +G G ++ R R +PPP RR R AP
Sbjct: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
Query: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGDSGWSHGHTARVGGTGDSSAGLTTFP 182
R R PL +R G R G G G + + + DS + F
Sbjct: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
Query: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215
G+ R G GR PRR R+P S+P P +
Sbjct: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
Query: 216 SPRSDPRDPAAPR 228
PRS PR PA R
Sbjct: 314 FPRSVPRFPAGFR 326
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 52.8 bits (125), Expect = 3e-07
Identities = 76/253 (30%), Positives = 93/253 (36%), Gaps = 53/253 (20%)
Query: 18 PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72
P +PR R P S + PP P + G+ LR P AP P P ARA P
Sbjct: 85 PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128
A P AAR P R A G +G G ++ R R +PPP RR R AP
Sbjct: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
Query: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGDSGWSHGHTARVGGTGDSSAGLTTFP 182
R R PL +R G R G G G + + + DS + F
Sbjct: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
Query: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215
G+ R G GR PRR R+P S+P P +
Sbjct: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
Query: 216 SPRSDPRDPAAPR 228
PRS PR PA R
Sbjct: 314 FPRSVPRFPAGFR 326
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 52.8 bits (125), Expect = 3e-07
Identities = 76/253 (30%), Positives = 93/253 (36%), Gaps = 53/253 (20%)
Query: 18 PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72
P +PR R P S + PP P + G+ LR P AP P P ARA P
Sbjct: 85 PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128
A P AAR P R A G +G G ++ R R +PPP RR R AP
Sbjct: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
Query: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGDSGWSHGHTARVGGTGDSSAGLTTFP 182
R R PL +R G R G G G + + + DS + F
Sbjct: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
Query: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215
G+ R G GR PRR R+P S+P P +
Sbjct: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
Query: 216 SPRSDPRDPAAPR 228
PRS PR PA R
Sbjct: 314 FPRSVPRFPAGFR 326
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 52.8 bits (125), Expect = 3e-07
Identities = 66/253 (26%), Positives = 87/253 (34%), Gaps = 51/253 (20%)
Query: 10 PLGGQ-WGTPLYPRARG---------PAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAP 59
P GG WG+P G P A + +P SP R R +A
Sbjct: 302 PSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVR-----------DKAA 350
Query: 60 SPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPP 119
+ AP PAR + R P + GG+ G R + RR R
Sbjct: 351 AAAPTPPARGKESPSPRS---------APSSQGRGGRAAGGAGRRRRRRRRRRRSRSSAS 401
Query: 120 AP-----RRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDS 174
AP RRPRPAP R S + + + G G G + G GH GG G
Sbjct: 402 APRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGH----GGHGKR 457
Query: 175 S---------AGLTTFPGS--SRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRD 223
+ A + PG+ RGG G+ S S P+ + S RS +
Sbjct: 458 AKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRS-RSAEKR 516
Query: 224 PAAPRAGPEAPPP 236
P +P P P
Sbjct: 517 PHSPSRSPSPKKP 529
Score = 47.0 bits (110), Expect = 1e-05
Identities = 63/223 (28%), Positives = 82/223 (36%), Gaps = 63/223 (28%)
Query: 21 PRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAV 80
PRAR PA S PSP RR G + R+P P P + +R P ++R R+
Sbjct: 463 PRAR-PASTS------PSPGAHGRRGGPEGK--SSSRSPGPHPRSWSSSRSPSKSRSRSA 513
Query: 81 ---PARAARGP-PKRPAGGQTGG--------VEAASGEERSQP----RRPRRPPPA---P 121
P +R P PK+P G EA RS+ R+ RR P+ P
Sbjct: 514 EKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRRDSPSFMEP 573
Query: 122 RR-----PRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSA 176
RR RP P R S ++ L+ + RS R
Sbjct: 574 RRITSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSRSPS--------------------- 612
Query: 177 GLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRS 219
PG S G +S R R R P S P+P+Y RS
Sbjct: 613 -----PGHSHGSYSSRSHGTRSRTRSP----SRTPSPSYHSRS 646
Score = 35.0 bits (79), Expect = 0.057
Identities = 52/217 (23%), Positives = 79/217 (36%), Gaps = 38/217 (17%)
Query: 34 SRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPP--KR 91
S P P + +++G R + R S + P R+ +K R R +R
Sbjct: 163 SASPPPKKKKKKKGGHRRSRKKRRLESECSC--GSSSPLRKKKKSVKKHRRDRSDSGSRR 220
Query: 92 PAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLT--------- 142
++ + E+ + +RP P R R + G S P L+
Sbjct: 221 KRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHS-----PSLSSHYSDSRSP 275
Query: 143 -------REKGGRSGRR---GDR-----GDSGWSHGHTARVGGTGDSSAGLTTFPGSSRG 187
R++G ++G + G R G SGW G R GG+G S PGS+
Sbjct: 276 SRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGW--GSPQRNGGSGQRSGAHGGRPGSAHS 333
Query: 188 GFSGREEEPRRERRQPSLQRSTPPA---PTYSPRSDP 221
R R + + TPPA + SPRS P
Sbjct: 334 PPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAP 370
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 52.0 bits (123), Expect = 4e-07
Identities = 56/233 (24%), Positives = 85/233 (36%), Gaps = 27/233 (11%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G P P +G + RP P G+ + G + P P P P P N
Sbjct: 76 GKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQ------SQGPPPRPGKPEGPPPQGGN 129
Query: 76 RKRAVPARAAR--GPPKRPAGGQTGGVEAASGEERSQP----RRPRRPPPAPRRPRPAPG 129
+ + P R + GPP + G Q+ G G+ P + + PPP P +P P
Sbjct: 130 QSQGPPPRPGKPEGPPPQ-GGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPP 188
Query: 130 RRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGT-------GDSSAGLTTFP 182
+ + + P + G + G++ S G R G G+ G P
Sbjct: 189 QGGNQSQGPPPRPGKPEGPPPQGGNQ-----SQGPPPRPGKPEGPPSQGGNKPQGPPPHP 243
Query: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
G +G +E + +R P + PP P +P+ PA GP PP
Sbjct: 244 GKPQG--PPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPP 294
Score = 48.1 bits (113), Expect = 6e-06
Identities = 58/252 (23%), Positives = 85/252 (33%), Gaps = 52/252 (20%)
Query: 21 PRARGPAIASAGYSRPP---SPVGRARRRGTWLRVLRGPRAPSPAPALP----------A 67
P R P + PP P GR + G + P P P P +
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQ------SQGPPPRPGKPEGPPPQGGNQS 89
Query: 68 RARPPRENRKRAVPARA---ARGPPKRP---------AGGQTGGVEAASGEERSQP---- 111
+ PPR + P + ++GPP RP G Q+ G G+ P
Sbjct: 90 QGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 149
Query: 112 RRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGT 171
+ + PPP P +P P + + + P + G + G++ S G R G
Sbjct: 150 NQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQ-----SQGPPPRPGKP 204
Query: 172 -------GDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDP 224
G+ S G PG G S +P+ P + PP P+ P
Sbjct: 205 EGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPP--- 261
Query: 225 AAPRAGPEAPPP 236
P P+ PPP
Sbjct: 262 --PPGRPQGPPP 271
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G P P +G + RP P G + G P+ P P P P + PP+E
Sbjct: 202 GKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGN------KPQGPPPHPGKP-QGPPPQEG 254
Query: 76 RK--RAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
K R P +GPP P G + +G +P+ PPP P+ RP
Sbjct: 255 NKPQRPPPPGRPQGPPP-PGGNPQQPLPPPAG-------KPQGPPPPPQGGRP 299
Score = 31.6 bits (70), Expect = 0.63
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 16 GTPLYP-RARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRE 74
G P +P + +GP + P P GR P+ P P P + PP
Sbjct: 238 GPPPHPGKPQGPPPQEGNKPQRPPPPGR-------------PQGPPPPGGNPQQPLPPPA 284
Query: 75 NRKRAVPARAARGPPKRPAGGQ 96
+ + P G P RP GQ
Sbjct: 285 GKPQGPPPPPQGGRPHRPPQGQ 306
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 51.2 bits (121), Expect = 8e-07
Identities = 43/133 (32%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 27 AIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAAR 86
A A+A +P GR RR P P+P L R+R P RAVP
Sbjct: 103 AAAAAHDQEAAAPTGRRWRR-----------RPGPSPPLQPRSRHPHTRYPRAVPEATPL 151
Query: 87 GPP--KRPAGGQTGGVEAASGEERSQPRRPRRPP---PAPRRPRPA--PGRRKSLYEAAP 139
PP RP G ++ RS+ PP P PR PRP P R +L E
Sbjct: 152 RPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRETPS 211
Query: 140 LLTREKGGRSGRR 152
L G R+G+R
Sbjct: 212 LSPPSPGRRNGKR 224
Score = 41.2 bits (95), Expect = 8e-04
Identities = 68/248 (27%), Positives = 88/248 (35%), Gaps = 61/248 (24%)
Query: 14 QWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPR 73
QWG+ +P R + A+A S P P P +R
Sbjct: 28 QWGSRAHPNPRSASSAAAAASSS---------------------FPPPGFIHPPSSRAAV 66
Query: 74 ENRKRAVPARAARGPPKRPAG--GQTGGV---------------EAASGEERSQPRRPRR 116
+R RA PA A R P+ AG +TG + EAA+ R RRP
Sbjct: 67 HSRLRAAPAAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGP 126
Query: 117 PPP-APRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSS 175
PP PR P +++ EA PL R G R R S AR G++
Sbjct: 127 SPPLQPRSRHPHTRYPRAVPEATPL--RPPPGTRPRAKSRPGCR-SSPFPARSRTPGEA- 182
Query: 176 AGLTTFPGSSRGGFSGREEEP-RRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAG---- 230
G RG R P RR P+L+ + P+ SP S R AG
Sbjct: 183 -------GPPRGDPRPRAPRPGDHPRRSPALRET----PSLSPPSPGRRNGKRAAGKGTT 231
Query: 231 --PEAPPP 236
P+ PPP
Sbjct: 232 PQPQPPPP 239
>gi|156415990 Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 51.2 bits (121), Expect = 8e-07
Identities = 54/193 (27%), Positives = 71/193 (36%), Gaps = 32/193 (16%)
Query: 59 PSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP--RRPRR 116
P P +R P R +R +P + PP A + G S ER++ +RPRR
Sbjct: 163 PGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRR 222
Query: 117 --PPP------------APRRPRPAPGR-RKSLYEAAPLLTREKGG-------RSGRRGD 154
PPP P + +P G R E APL ++ G R R
Sbjct: 223 WCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYR 282
Query: 155 RGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPT 214
R GG G++ S+G G EP+R R +P QR AP
Sbjct: 283 RPFRPRPRQQPTTEGGDGETKP--------SQGPADGSRPEPQRPRNRPYFQRRRQQAPG 334
Query: 215 YSPRSDPRDPAAP 227
PR PAAP
Sbjct: 335 PQQAPGPRQPAAP 347
Score = 28.5 bits (62), Expect = 5.3
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 58 APSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP--R 115
A + A A+PA P AV G P++ GG GG AASG P P R
Sbjct: 6 AAAGATAVPAATVPATAAGVVAVVVPVPAGEPQK-GGGAGGGGGAASGPAAGTPSAPGSR 64
Query: 116 RP--PPAPRRPRPAPGRR 131
P P PAP R
Sbjct: 65 TPGNPATAVSGTPAPPAR 82
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 51.2 bits (121), Expect = 8e-07
Identities = 54/195 (27%), Positives = 64/195 (32%), Gaps = 25/195 (12%)
Query: 11 LGGQWGTPLYP-----RARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPAL 65
L G WG+P P A GP + PP+ + A G +R GP P L
Sbjct: 383 LSGPWGSPPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRP--GPPGLQELPPL 440
Query: 66 PARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR------RPPP 119
P PP P PP P G A + P P P
Sbjct: 441 PPPTPPPTLQPPALQPTPLPVAPPLTPGLGHKESALAPTAAPALPPALAADQAPAPSPAP 500
Query: 120 APRRPRPAPGRRKSLYEAAPLLT---REKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSA 176
AP P+P AAP+ T R KG R+ R R D + G G
Sbjct: 501 APTVAEPSPPVSAPAPAAAPIKTRTRRNKGSRAARGATRKDG---------LHGDGPRER 551
Query: 177 GLTTFPGSSRGGFSG 191
T P SS GG G
Sbjct: 552 ATATVPDSSGGGGGG 566
Score = 32.7 bits (73), Expect = 0.28
Identities = 44/143 (30%), Positives = 53/143 (37%), Gaps = 27/143 (18%)
Query: 11 LGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLR----------GPRAPS 60
LGG G L+ A G + + P P G AR G R + G P
Sbjct: 268 LGGGGGGGLFA-ASGAISYAEVLKQGPLPPGAARPLGEVSRGAQEAEGGDGDGEGCSGPP 326
Query: 61 PAPALPARARPPRE------NRKRAVPARAARGPPK----RPAGGQTGG----VEAASGE 106
APA ARA PP ++ + A GP + AGG G A SG
Sbjct: 327 SAPASQARALPPPPYTTFPGSKPKFDWVSAPDGPERHFRFNGAGGGIGAPRRRAAALSGP 386
Query: 107 ERSQPRRPRR--PPPAPRRPRPA 127
S P P + P PRRP PA
Sbjct: 387 WGSPPPPPEQIHSAPGPRRPAPA 409
Score = 29.3 bits (64), Expect = 3.1
Identities = 36/148 (24%), Positives = 46/148 (31%), Gaps = 29/148 (19%)
Query: 5 NMSCVPLGGQWGTPLYPRARGPAIASAGYSRPP---SPVGRARRRGTWLRV------LRG 55
N+ P G + P R P P + R G W L
Sbjct: 3 NLQSEPSAGGGSRKVQPSDRAPDSRRTSLVEPEMTSQAMRLTRGLGVWFPGSATPPGLMV 62
Query: 56 PRAPSPAPA-LPARARPPRENRKRAVPARAARGPPKRPAGGQTGG--------------- 99
PR P +P+ LP P A A PP PAG G
Sbjct: 63 PREPQASPSTLPLTLERPSPVMPPPEEAAAVSAPPPAPAGTLLPGPSKWQKPAGTPVPRI 122
Query: 100 ---VEAASGEERSQPR-RPRRPPPAPRR 123
+EA+ + P RP +PPP PR+
Sbjct: 123 RRLLEASHRGQGDPPSLRPLKPPPPPRQ 150
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 50.8 bits (120), Expect = 1e-06
Identities = 39/107 (36%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTR 143
AA GPPKRP G G S+P PRRPPPAP G RK L PL
Sbjct: 1679 AAEGPPKRPGGSSPLNAVPCEGPPGSEP--PRRPPPAPH-----DGDRKELPREQPLPPG 1731
Query: 144 EKGGRSGRRGDRGDSGWSHGHTARVG-----GTGDSSAGLTTFPGSS 185
G +R DRG + R G GT D + L G S
Sbjct: 1732 PIGTERSQRTDRGTEPGPIRPSHRPGPPVQFGTSDKDSDLRLVVGDS 1778
Score = 40.8 bits (94), Expect = 0.001
Identities = 55/232 (23%), Positives = 76/232 (32%), Gaps = 28/232 (12%)
Query: 13 GQWGTPL-YPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARP 71
G WG P YP GP +PP+P W + + + AR R
Sbjct: 421 GNWGPPGDYPDRGGPPC------KPPAPEDEDE---AWRQRRKQSSSEISLAVERARRRR 471
Query: 72 PRENRKRAVPARAARGPPKRPAGGQTGGVEAA-SGEERSQPRRPRRPPPAPRRPR--PAP 128
E R+ RAA + + G + E + P P P P P P+ PAP
Sbjct: 472 EEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAP 531
Query: 129 GRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGG 188
P E+ ++ G + T GG SS +S G
Sbjct: 532 PAPPPASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSS--------TSSGS 583
Query: 189 FSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRA---GPEAPPPA 237
F EP+ PS + PP P + P P+ GP PP+
Sbjct: 584 FEASPVEPQL----PSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPS 631
Score = 35.8 bits (81), Expect = 0.033
Identities = 48/191 (25%), Positives = 68/191 (35%), Gaps = 45/191 (23%)
Query: 70 RPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPG 129
RPP + K+ P P +T E S+P PPAP+ P P P
Sbjct: 369 RPPEADGKKG------NSPNSEPPTPKTAWAET------SRPPETEPGPPAPKPPLPPPH 416
Query: 130 RRKSLYEAAPLLTREKGGRSGR--RGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRG 187
R + P ++GG + + D W SS+ ++ +R
Sbjct: 417 RGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRK-------QSSSEISLAVERAR- 468
Query: 188 GFSGREEEPRR---ERRQPSLQ----------------RSTPPAPTYSPRSDPRDPAAPR 228
REEE RR ERR + ++ P AP +P + PA P+
Sbjct: 469 --RRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPK 526
Query: 229 --AGPEAPPPA 237
P APPPA
Sbjct: 527 ELPAPPAPPPA 537
Score = 34.3 bits (77), Expect = 0.097
Identities = 57/205 (27%), Positives = 71/205 (34%), Gaps = 60/205 (29%)
Query: 54 RGPRAPSPAPALPARARPPRENRKRAVPARAARGPP--------------KRPAGGQT-- 97
RG + P+P R+RPP E P PP PAG Q
Sbjct: 1427 RGDKRSWPSPK--NRSRPPEERP----PGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQAL 1480
Query: 98 -------GGVEAASGEERSQPRRPRRPP-PAPRRP-RPAPGRRKSLYEAAPLLTREKGGR 148
G V A G R +P P+ P P+PR P R P R S + P E+ G
Sbjct: 1481 AQLSSRQGSVTAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHF--EEPGP 1538
Query: 149 SGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRS 208
R VGGT SAG++ FP R R R+P L +
Sbjct: 1539 MVRG---------------VGGTPRDSAGVSPFPPKRR----------ERPPRKPELLQE 1573
Query: 209 TPPAPTYSPRSDPRDPAAPRAGPEA 233
P +S P P GP+A
Sbjct: 1574 ESLPPPHSSGFLGSKPEGP--GPQA 1596
Score = 33.9 bits (76), Expect = 0.13
Identities = 60/236 (25%), Positives = 76/236 (32%), Gaps = 58/236 (24%)
Query: 54 RGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAG-----------GQTGGVEA 102
+GP P R P + +R +P PP+R AG +
Sbjct: 911 QGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRR-AGPIKKPPPPTKVEELPPKPL 969
Query: 103 ASGEERSQPRRP--------------RRPPPAPRRPRPAPGRRKSLYEAAPLLTREKG-- 146
G+E +P +P PP P P R S P R +G
Sbjct: 970 EQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAPRLRRDYSYERVGPTSCRGRGRG 1029
Query: 147 -------GRSGRRGDRGDSGWS---------HGHTARVGGTG-----DSSAGLTTFPGSS 185
G G G RG S G R GGTG + G T S
Sbjct: 1030 EYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRS 1089
Query: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAG-----PEAPPP 236
G S EE P+R R++ S S +P SD P P+ G P APPP
Sbjct: 1090 EG--SEYEEIPKRRRQRGSETGSETHESDLAP-SDKEAP-TPKEGTLTQVPLAPPP 1141
Score = 33.5 bits (75), Expect = 0.16
Identities = 56/219 (25%), Positives = 76/219 (34%), Gaps = 56/219 (25%)
Query: 51 RVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQ 110
R+ P AP AP+ PA PP AVP P PA T ++
Sbjct: 503 RLKAEPAAPPAAPSTPAP--PP------AVPKELPAPPAPPPASAPT---------PETE 545
Query: 111 PRRPRRPPPAPRRPRPAPGRRKSL--------------YEAAPLLTREKGGRSGRRGDRG 156
P P + PPA P P +L +EA+P+ + + G
Sbjct: 546 PEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPV-EPQLPSKEGPEPPEE 604
Query: 157 DSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEE--PRRERRQPSL--------- 205
+ +V GD G T P S G+ ++ PR +R+Q
Sbjct: 605 VPPPTTPPVPKVEPKGDG-IGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQ 663
Query: 206 -----QRSTPPAPTYSPRSDPRD---PAAPRAGPEAPPP 236
Q S PP P P S P+ A P P+APPP
Sbjct: 664 WQQHQQGSAPPTPV--PPSPPQPVTLGAVP--APQAPPP 698
Score = 33.1 bits (74), Expect = 0.22
Identities = 50/178 (28%), Positives = 62/178 (34%), Gaps = 40/178 (22%)
Query: 56 PRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR 115
P AP PAP PP +P A PP R P
Sbjct: 1997 PPAPPPAP-------PPLS----LLPVGPALQPPSLAV--------------RPPPAPAT 2031
Query: 116 RPPPAPRRPRPAPGRRKSLY--EAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGD 173
R P+P RP PA R L+ E P +K S G G S R TG
Sbjct: 2032 RVLPSPARPFPASLGRAELHPVELKPFQDYQK--LSSNLGGPGSS--------RTPPTGR 2081
Query: 174 SSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGP 231
S +GL + ++ +SG R + Q Q S P A + P+ R PR GP
Sbjct: 2082 SFSGLNSRLKATPSTYSGVFRTQRVDLYQ---QASPPDALRWIPKPWERTGPPPREGP 2136
Score = 32.3 bits (72), Expect = 0.37
Identities = 47/215 (21%), Positives = 67/215 (31%), Gaps = 23/215 (10%)
Query: 29 ASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGP 88
+++G RPP G+ P+P A +RPP P P
Sbjct: 363 SASGEERPPEADGKKGNSPN-------SEPPTPKTAWAETSRPPETEPGPPAPKPPLPPP 415
Query: 89 PKRPAG--GQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKG 146
+ PAG G G G P PPAP A +R+ + L E+
Sbjct: 416 HRGPAGNWGPPGDYPDRGG--------PPCKPPAPEDEDEAWRQRRKQSSSEISLAVERA 467
Query: 147 GRSGRRGDRGDSGWSHGHTARVGGTGDSSAG-----LTTFPGSSRGGFSGREEEPRRERR 201
R +R A D G L P + S P +
Sbjct: 468 RRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKE 527
Query: 202 QPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
P+ + PPA +P ++P +PA P P
Sbjct: 528 LPA-PPAPPPASAPTPETEPEEPAQAPPAQSTPTP 561
Score = 31.6 bits (70), Expect = 0.63
Identities = 60/240 (25%), Positives = 81/240 (33%), Gaps = 69/240 (28%)
Query: 54 RGPRAPSPAPALPARARPPRENRKRAV-PARAARGPPKRPAGG---QTGGVEAASGEERS 109
+ P+ PSP P P R P R N + P GP R GG + GV + R
Sbjct: 1505 QAPQGPSPRP--PTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGVSPFPPKRRE 1562
Query: 110 QPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSG--------WS 161
+P PR+P P P + + L ++ +G G + + D+G W+
Sbjct: 1563 RP--PRKPELLQEESLPPP------HSSGFLGSKPEG--PGPQAESRDTGTEALTPHIWN 1612
Query: 162 HGHTAR----------------------VGGT------------GDS--SAGLTTFPGSS 185
HTA V GT GDS S+G + S
Sbjct: 1613 RLHTATSRKSYRPSSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSP 1672
Query: 186 RGGFSGREEEPRRERRQPSLQRSTP---PAPTYSPRSDPRDP------AAPRAGPEAPPP 236
GG G E P + S + P P + PR P P PR P P P
Sbjct: 1673 DGGLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDRKELPREQPLPPGP 1732
Score = 30.8 bits (68), Expect = 1.1
Identities = 52/195 (26%), Positives = 67/195 (34%), Gaps = 49/195 (25%)
Query: 55 GPRAPSPAPALPARARPPRENRKRA-----VPARAARGPPKRPAGGQTGGV--------- 100
GP P PAP R R E R +P R +R G +TG
Sbjct: 1072 GPNHP-PAP----RGRTASETRSEGSEYEEIPKR------RRQRGSETGSETHESDLAPS 1120
Query: 101 --EAASGEERSQPRRPRRPPPAPRRPRPAPGR---RKSLYEAAPLLTREKGGRSGRRGDR 155
EA + +E + + P PPP P PAP R R + +G GR +
Sbjct: 1121 DKEAPTPKEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQ 1180
Query: 156 GDSGWSHGHTA------RVGGTGDSSAGL--TTFPGS----SRGGFSGRE-------EEP 196
GWS + G S L PG +RGG +G E P
Sbjct: 1181 VCPGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMEDGERP 1240
Query: 197 RRERRQPSLQRSTPP 211
RR R + Q+ PP
Sbjct: 1241 RRRRHGRAQQQDKPP 1255
Score = 29.6 bits (65), Expect = 2.4
Identities = 46/169 (27%), Positives = 61/169 (36%), Gaps = 20/169 (11%)
Query: 85 ARGPPKRPAGGQTGGVEAASGEERSQPRRP--------RRPPPAPRRPRPAPGRRKSLYE 136
A G P GG G+ A S + SQ + +RP + RP PG +
Sbjct: 1350 AVGTPGGGGGGAVPGISAMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPGGKAG--S 1407
Query: 137 AAPLLTREKGGRSGRRGD-RGDS-GW-SHGHTARVGGTGDSSAGLTTFPGSSRGGFS--- 190
+ GG GR G RGD W S + +R L P SS F
Sbjct: 1408 SGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQ 1467
Query: 191 ---GREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
++ Q S ++ + AP PR P P AP+ GP PP
Sbjct: 1468 VIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQ-GPSPRPP 1515
Score = 27.7 bits (60), Expect = 9.0
Identities = 60/234 (25%), Positives = 78/234 (33%), Gaps = 40/234 (17%)
Query: 34 SRPPSPVGRARRRGTWLRVLRGPRAPSPAPAL---PARARPPR------ENRKRAVP--- 81
S PP+PV + + L + P+AP P P A RPP + R +P
Sbjct: 671 SAPPTPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYV 730
Query: 82 -ARAARGPPK---RPAGGQTGGV----EAASGEERSQPRRPRRPPPAPRRPRPAPGRRKS 133
R +G P P G G+ + SG S+P R PA R R P
Sbjct: 731 DPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPF--DRHAPAMLRERGTPPVDPK 788
Query: 134 L------YEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRG 187
L + A P R + D D G T V A FP +
Sbjct: 789 LAWVGDVFTATPAEPRPLTSPLRQAADEDDKG-MRSETPPVPPPPPYLASYPGFPENGAP 847
Query: 188 G-----FSGREEEPRRERRQP---SLQRSTPPAPTYSPRSDPRDPAAPRAGPEA 233
G F E PR P + + P P P P++ A GPEA
Sbjct: 848 GPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEP---PKEETAQLTGPEA 898
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 50.8 bits (120), Expect = 1e-06
Identities = 59/224 (26%), Positives = 83/224 (37%), Gaps = 40/224 (17%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G P P +G + + S P P G + G P+ P P P P P N
Sbjct: 219 GKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQ------PQGPPPPPGKPQGPPPQGGN 272
Query: 76 RKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA----PRRPRPAPGRR 131
+ + P PP +P G G + S RS P +P+ PPP P+ P P PG+
Sbjct: 273 KPQGPP------PPGKPQGPPPQG-GSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK- 324
Query: 132 KSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSG 191
P +GG + G G + GG+ SA + PG +G
Sbjct: 325 -------PQGPPPQGGNKPQGPP--PPGKPQGPPPQ-GGSKSRSA--RSPPGKPQG---- 368
Query: 192 REEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
P++E P + PP +P+ PA GP PP
Sbjct: 369 ---PPQQEGNNP---QGPPPPAGGNPQQPQAPPAGQPQGPPRPP 406
Score = 45.4 bits (106), Expect = 4e-05
Identities = 46/202 (22%), Positives = 69/202 (34%), Gaps = 26/202 (12%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGG 95
PPSP G+ P+ P P + PP + + P + P P G
Sbjct: 50 PPSPPGK-------------PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 96
Query: 96 QTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDR 155
+ G + RS PR PP P+ P P G + + P + G + G++
Sbjct: 97 KPQGPPPQGDKSRS----PRSPPGKPQGPPPQGGNQP---QGPPPPPGKPQGPPPQGGNK 149
Query: 156 GDSGWSHGHTARVGGTGDS-SAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPT 214
G GD+ S + PG +G +P+ P + PP
Sbjct: 150 PQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 209
Query: 215 YSPRSDPRDPAAPRAGPEAPPP 236
P+ P P P+ PPP
Sbjct: 210 NKPQGPP-----PPGKPQGPPP 226
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/214 (24%), Positives = 76/214 (35%), Gaps = 29/214 (13%)
Query: 32 GYSRPPSPVGRARRRGTWLRVLRG-PRAPSPAPALPARARPPRENRKRAVPARAARGPPK 90
G + P P G + R + R G P+ P P + PP + + P + P
Sbjct: 157 GKPQGPPPQGDNKSRSS--RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 214
Query: 91 RPAGGQTGGV----EAASGEERSQPRRPRRPPP----APRRPRPAPGRRKSLYEAAPLLT 142
P G+ G + S RS P +P+ PPP P+ P P PG+ P
Sbjct: 215 PPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGK--------PQGP 266
Query: 143 REKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQ 202
+GG + G G + G SS + PG +G +P+
Sbjct: 267 PPQGGNKPQ--GPPPPGKPQGPPPQGGSKSRSS---RSPPGKPQGPPPQGGNQPQGPPPP 321
Query: 203 PSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
P + PP P+ P P P+ PPP
Sbjct: 322 PGKPQGPPPQGGNKPQGPP-----PPGKPQGPPP 350
Score = 38.5 bits (88), Expect = 0.005
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 26/138 (18%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G P P +G + + + S P P G + G P+ P P P P P N
Sbjct: 281 GKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQ------PQGPPPPPGKPQGPPPQGGN 334
Query: 76 RKRAVP---------------ARAARGPPKRPAGG---QTGGVEAASGEERSQPRRPRRP 117
+ + P +R+AR PP +P G + + P++P+ P
Sbjct: 335 KPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAP 394
Query: 118 PPAPRR--PRPAPGRRKS 133
P + PRP G R S
Sbjct: 395 PAGQPQGPPRPPQGGRPS 412
Score = 36.2 bits (82), Expect = 0.025
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 8/139 (5%)
Query: 98 GGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGD 157
G + A + ++P+ P PP P+ P P G + + P + G + G++
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQP---QGPPPPPGKPQGPPPQGGNKPQ 90
Query: 158 SGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSP 217
G GD S + PG +G +P+ P + PP P
Sbjct: 91 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 150
Query: 218 RSDPRDPAAPRAGPEAPPP 236
+ P P P+ PPP
Sbjct: 151 QGPP-----PPGKPQGPPP 164
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 50.4 bits (119), Expect = 1e-06
Identities = 63/232 (27%), Positives = 91/232 (39%), Gaps = 39/232 (16%)
Query: 10 PLGGQ--WGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA 67
P GG G P + +GP P SP G+ + G + P+ P P P P
Sbjct: 123 PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ--GPPPQGGNQPQGPPPPPGKP- 179
Query: 68 RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA----PRR 123
+ PP+ +K P PP +P G G ++ S + S P +P+ PPP P+
Sbjct: 180 QGPPPQGGKKPQGPP-----PPGKPQGPPPQGDKSRSSQ--SPPGKPQGPPPQGGNQPQG 232
Query: 124 PRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPG 183
P P PG+ P +GG + G G A+ GG+ SA + PG
Sbjct: 233 PPPPPGK--------PQGPPPQGGNKPQGPP--PPGKPQGPPAQ-GGSKSQSA--RSPPG 279
Query: 184 SSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
+G P++E P + PP +P+ PA GP PP
Sbjct: 280 KPQG-------PPQQEGNNP---QGPPPPAGGNPQQPQAPPAGQPQGPPRPP 321
Score = 49.7 bits (117), Expect = 2e-06
Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 12/181 (6%)
Query: 56 PRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR 115
P+ PSP + PP + + P + P P G+ G + RS PR
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRS----PR 91
Query: 116 RPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSS 175
PP P+ P P G + + P + G + G+R G GD S
Sbjct: 92 SPPGKPQGPPPQGGNQP---QGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKS 148
Query: 176 AGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
+ PG +G +P+ P + PP P+ P P P+ PP
Sbjct: 149 RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPP-----PPGKPQGPP 203
Query: 236 P 236
P
Sbjct: 204 P 204
Score = 46.2 bits (108), Expect = 2e-05
Identities = 64/244 (26%), Positives = 92/244 (37%), Gaps = 45/244 (18%)
Query: 10 PLGGQW--GTPLYP-RARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALP 66
P GG G P P + +GP + P P G+ + R PR+P P P
Sbjct: 102 PQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGP 161
Query: 67 A-------RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPR---RPRR 116
+ PP + + P + + P P G+ G + RS +P+
Sbjct: 162 PPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQG 221
Query: 117 PPP----APRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTG 172
PPP P+ P P PG+ P +GG + G G A+ GG+
Sbjct: 222 PPPQGGNQPQGPPPPPGK--------PQGPPPQGGNKPQ--GPPPPGKPQGPPAQ-GGSK 270
Query: 173 DSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAG-P 231
SA + PG +G P++E P Q PPA +P+ P AP AG P
Sbjct: 271 SQSA--RSPPGKPQG-------PPQQEGNNP--QGPPPPA-----GGNPQQPQAPPAGQP 314
Query: 232 EAPP 235
+ PP
Sbjct: 315 QGPP 318
Score = 35.0 bits (79), Expect = 0.057
Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 10 PLGGQW--GTPLYP-RARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALP 66
P GG G P P + +GP + P P G+ + GP A + +
Sbjct: 224 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ----------GPPAQGGSKSQS 273
Query: 67 ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
AR+ P + +GPP PAGG +A QP+ P RPP R RP
Sbjct: 274 ARSPPGKPQGPPQQEGNNPQGPPP-PAGGNPQQPQAPPA---GQPQGPPRPPQGGRPSRP 329
Score = 33.9 bits (76), Expect = 0.13
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGG 95
PP P G+ + G + P+ P P P P PP + ++ AR+ G P+ P
Sbjct: 233 PPPPPGKPQ--GPPPQGGNKPQGPPP-PGKPQG--PPAQGGSKSQSARSPPGKPQGPPQQ 287
Query: 96 QTGGVEAASGEERSQPRRPRRPPPAPRR--PRPAPGRRKS 133
+ + P++P+ PP + PRP G R S
Sbjct: 288 EGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPS 327
Score = 30.4 bits (67), Expect = 1.4
Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 14/147 (9%)
Query: 98 GGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKS--LYEAAPLLTREKGGRSGRRGDR 155
G + S + ++P+ P PP P+ P P G + P +G +S R R
Sbjct: 34 GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS--RSPR 91
Query: 156 GDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPA--P 213
G G + G+ G PG +G P+ P + PP
Sbjct: 92 SPPGKPQGPPPQ---GGNQPQGPPPPPGKPQGPPPQGGNRPQGP-PPPGKPQGPPPQGDK 147
Query: 214 TYSPRSDPRDPAA--PRAG--PEAPPP 236
+ SPRS P P P+ G P+ PPP
Sbjct: 148 SRSPRSPPGKPQGPPPQGGNQPQGPPP 174
Score = 29.6 bits (65), Expect = 2.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 199 ERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
+ PSL P P+ + P+ P P P+ PPP
Sbjct: 25 QEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPP 62
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 50.1 bits (118), Expect = 2e-06
Identities = 68/218 (31%), Positives = 82/218 (37%), Gaps = 51/218 (23%)
Query: 36 PPSPVGR--ARRRGTWLRVLRGPRAPSPAPA----------LPARARPPRENRKRAVPAR 83
P +P G+ RRG GPR P+P PA P RARP R+ AR
Sbjct: 37 PRTPGGQLPGARRGP------GPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAAR 90
Query: 84 AARGPPKRPA--GGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLY---EAA 138
P RP + GG A G P PA PRPAPGR +L AA
Sbjct: 91 CLPLRPHRPTRRHRRPGGFPLAWGS----------PQPA---PRPAPGRSSALALAGGAA 137
Query: 139 PLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRR 198
P + R + R G G G SH GG G G T PG RG + P+R
Sbjct: 138 PGVARAQ--RPG-----GSGGRSH-----PGGPGSPRGGGTVGPG-DRGPAAADGGRPQR 184
Query: 199 ERRQPSLQ--RSTPPAPTYSPRSDPRDPAAPRAGPEAP 234
R + + PP P A GP++P
Sbjct: 185 TVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSP 222
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 49.3 bits (116), Expect = 3e-06
Identities = 69/236 (29%), Positives = 85/236 (36%), Gaps = 32/236 (13%)
Query: 13 GQWGTPLYPRARG-PAIA----SAGYSRPPSPVGRARRRGTWLRVLRGPR-APSPAPALP 66
G+ G+P P A G P A + G+ P P G +G G R AP PA
Sbjct: 465 GKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGP-----AGERGAPGPAGPRG 519
Query: 67 ARARPPRENRKRAVPARAA-RGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPR 125
A P R+ VP RG P P G G + G SQ R PP P PR
Sbjct: 520 AAGEPGRDG----VPGGPGMRGMPGSPGGP---GSDGKPGPPGSQGESGRPGPPGPSGPR 572
Query: 126 PAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSS 185
PG + P G++G RG G G G + G TG T PG
Sbjct: 573 GQPG---VMGFPGPKGNDGAPGKNGERGGPGGPG-PQGPPGKNGETGPQGPPGPTGPGGD 628
Query: 186 RG-----GFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
+G G G + P P + P P P+ D P AP +A P
Sbjct: 629 KGDTGPPGPQGLQGLP--GTGGPPGENGKPGEP--GPKGDAGAPGAPGGKGDAGAP 680
Score = 45.8 bits (107), Expect = 3e-05
Identities = 56/187 (29%), Positives = 72/187 (38%), Gaps = 33/187 (17%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARAR-- 70
G+ G+P P A G+ PP PVG A + G R GP P+ AP PA +R
Sbjct: 1035 GENGSPGAPGA-------PGHPGPPGPVGPAGKSGD--RGESGPAGPAGAPG-PAGSRGA 1084
Query: 71 ----PPRENR-----KRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAP 121
PR ++ + A + RG P P + G G S R P P
Sbjct: 1085 PGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGP 1144
Query: 122 RRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTF 181
P PG+ + P+ G G RG+RG G S GH + G G A
Sbjct: 1145 SGP---PGKDGTSGHPGPI---GPPGPRGNRGERGSEG-SPGHPGQPGPPGPPGA----- 1192
Query: 182 PGSSRGG 188
PG GG
Sbjct: 1193 PGPCCGG 1199
Score = 43.5 bits (101), Expect = 2e-04
Identities = 74/285 (25%), Positives = 92/285 (32%), Gaps = 81/285 (28%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPP 72
G+ G P P +G AG P G A G RGP + AP L A PP
Sbjct: 651 GENGKPGEPGPKG----DAGAPGAPGGKGDAGAPGE-----RGPPGLAGAPGLRGGAGPP 701
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEE------------------------- 107
+ A GPP P T G++ GE
Sbjct: 702 GPEG-----GKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPG 756
Query: 108 RSQPRRPRRP--PPAP------------------RRPRPAPGRRKSL-------YEAAPL 140
+ PR P P PP P PR +PG R + AP
Sbjct: 757 KDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPG 816
Query: 141 LTREKGGRS--GRRGDRGDSGWSHGHTARVGGTGDSS----AGLTTFPGSSRG----GFS 190
E GG+ G G++G+ G G GG+G + G+ GS G GF
Sbjct: 817 QNGEPGGKGERGAPGEKGEGG-PPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFP 875
Query: 191 GREEEPRRERRQPSLQRSTPPAPTYSPRSD-PRDPAAPRAGPEAP 234
G P S PP P+ SP D P PA P +P
Sbjct: 876 GARGLP---GPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917
Score = 43.1 bits (100), Expect = 2e-04
Identities = 66/246 (26%), Positives = 85/246 (34%), Gaps = 33/246 (13%)
Query: 13 GQWGTPLYPRARGP-----AIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA 67
G+ G P P A G A S G PP P G A G+ +G P+ +P +
Sbjct: 306 GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGS--PGAKGEVGPAGSPG--S 361
Query: 68 RARPPRENRKRAVPARAARGPPKRPA-GGQTGGVE--AASGEERSQPRRPRRPPPAPRRP 124
P + A+GPP P G GG +G + R PP P
Sbjct: 362 NGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGA 421
Query: 125 RPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSG--WSHGHTARVGGTGDSSAGLTTFP 182
APG R E + + G G RG+ G G + G + G G+ A
Sbjct: 422 NGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGA 481
Query: 183 GSSRG--GFSG--------REEEPRRERRQPSLQRSTPPAPTYSPRSDPRD--PAAP--R 228
RG GF G E+ P ER P P P + RD P P R
Sbjct: 482 AGERGAPGFRGPAGPNGIPGEKGPAGERGAPG-----PAGPRGAAGEPGRDGVPGGPGMR 536
Query: 229 AGPEAP 234
P +P
Sbjct: 537 GMPGSP 542
Score = 36.2 bits (82), Expect = 0.025
Identities = 51/186 (27%), Positives = 64/186 (34%), Gaps = 32/186 (17%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPP 72
G+ G P P +GPA P G RG R G + + AP L P
Sbjct: 240 GERGLPGPPGIKGPAGI-------PGFPGMKGHRGFDGR--NGEKGETGAPGLKGENGLP 290
Query: 73 RENRK------RAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
EN R P RG P P G + A G + QP PP P
Sbjct: 291 GENGAPGPMGPRGAPGE--RGRPGLPGAAGARGNDGARGSD-GQPG-----PPGPPGTAG 342
Query: 127 APGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWS--------HGHTARVGGTGD-SSAG 177
PG + E P + G G+RG+ G G + G GG G+ AG
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG 402
Query: 178 LTTFPG 183
+ PG
Sbjct: 403 IPGAPG 408
Score = 35.8 bits (81), Expect = 0.033
Identities = 62/241 (25%), Positives = 77/241 (31%), Gaps = 36/241 (14%)
Query: 7 SCVPLGGQWGTPLYPR---ARGPAIAS-AGYSRPPSPVGRARRRGTWLRVLRGPRAPSPA 62
SC P G Q +P Y G A+ AGY P P G GT +
Sbjct: 143 SC-PTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGT--------SGHPGS 193
Query: 63 PALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRR----PP 118
P P PP E P +A P P G A E +P RP P
Sbjct: 194 PGSPGYQGPPGE------PGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGP 247
Query: 119 PAPRRPRPAPGRRKSLYEAAPLLTREKG--GRSGRRGDRGDSGWSHGHTARVGGTG-DSS 175
P + P PG P + +G GR+G +G+ G G G G G
Sbjct: 248 PGIKGPAGIPG--------FPGMKGHRGFDGRNGEKGETGAPGLK-GENGLPGENGAPGP 298
Query: 176 AGLTTFPGS-SRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAP 234
G PG R G G + + S + PP P + A GP
Sbjct: 299 MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGS 358
Query: 235 P 235
P
Sbjct: 359 P 359
Score = 34.3 bits (77), Expect = 0.097
Identities = 66/262 (25%), Positives = 81/262 (30%), Gaps = 53/262 (20%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTW----LRVLRGPRA---------- 58
G G P RGP G PP P G+ +G L + GPR
Sbjct: 750 GADGVPGKDGPRGPT----GPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP 805
Query: 59 --PSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTG-------GVEAASGEERS 109
P+ P P + P +R P G P AG G G + G ER
Sbjct: 806 PGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG-ERG 864
Query: 110 QPRRPRR-----------PP-----PAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRG 153
P P PP P P P +PG+ A G SG +G
Sbjct: 865 SPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKG 924
Query: 154 DRGDSG--WSHGHTARVGGTGD-SSAGLTTFPG-SSRGGFSGREEEPRRERRQPSLQRST 209
D G G S G G G AG+T G + G G P P +
Sbjct: 925 DAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSP-----GPQGVKGE 979
Query: 210 PPAPTYSPRSDPRDPAAPRAGP 231
P + S R P P+ P
Sbjct: 980 SGKPGANGLSGERGPPGPQGLP 1001
Score = 32.0 bits (71), Expect = 0.48
Identities = 52/208 (25%), Positives = 61/208 (29%), Gaps = 31/208 (14%)
Query: 54 RGPRAPSPAPALPARARPP-------------RENRKRAVPARAARGPPKRP-AGGQTG- 98
RGP P P L A P R+ R G P P A G G
Sbjct: 992 RGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGP 1051
Query: 99 ----GVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGD 154
G SG+ P P R APG + + R G G RG
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGF 1111
Query: 155 RGDSG--WSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPA 212
G+ G S G + G G P RG G P ++ PP
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPG------PAGPRGPV-GPSGPPGKDGTSGHPGPIGPPG 1164
Query: 213 P--TYSPRSDPRDPAAP-RAGPEAPPPA 237
P R P P + GP PP A
Sbjct: 1165 PRGNRGERGSEGSPGHPGQPGPPGPPGA 1192
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 49.3 bits (116), Expect = 3e-06
Identities = 52/201 (25%), Positives = 71/201 (35%), Gaps = 38/201 (18%)
Query: 56 PRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR 115
P+ P P P P P N+ + P PP +P G G + G P +P
Sbjct: 47 PQRPPPPPGKPQGPPPQGGNQSQGPPP-----PPGKPEGRPPQGGNQSQGPP-PHPGKPE 100
Query: 116 RPPP--------------APRRPRPAPGRRKSLYEAAPLLTREKGGRSGR--RGDRGDSG 159
RPPP P RP P G + P + G +G G
Sbjct: 101 RPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPG 160
Query: 160 WSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSP-- 217
G + G+ S + PG +G P++E +P Q PP P
Sbjct: 161 KPEGPPPQ---EGNKSRSARSPPGKPQG-------PPQQEGNKP--QGPPPPGKPQGPPP 208
Query: 218 -RSDPRDPAAPRAG-PEAPPP 236
+P+ P AP AG P+ PPP
Sbjct: 209 AGGNPQQPQAPPAGKPQGPPP 229
Score = 46.6 bits (109), Expect = 2e-05
Identities = 58/215 (26%), Positives = 79/215 (36%), Gaps = 46/215 (21%)
Query: 35 RPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRP-- 92
RPP P G+ + G + + P P P P P N+ + P G P+RP
Sbjct: 49 RPPPPPGKPQ--GPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHP--GKPERPPP 104
Query: 93 -AGGQTGGVEAASGEERSQPRRPRRPPPA----PRRPRPAPGRRKSLYEAAPLLTREKGG 147
G Q+ G G +P RPPP RP P PG+ P +GG
Sbjct: 105 QGGNQSQGTPPPPG-------KPERPPPQGGNQSHRPPPPPGK--------PERPPPQGG 149
Query: 148 RSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQR 207
+ G G G + G+ S + PG +G P++E +P Q
Sbjct: 150 NQSQ-GPPPHPGKPEGPPPQ---EGNKSRSARSPPGKPQG-------PPQQEGNKP--QG 196
Query: 208 STPPAPTYSPR---SDPRDPAAPRA----GPEAPP 235
PP P +P+ P AP A GP PP
Sbjct: 197 PPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPP 231
Score = 44.3 bits (103), Expect = 9e-05
Identities = 47/149 (31%), Positives = 61/149 (40%), Gaps = 35/149 (23%)
Query: 10 PLGGQW--GTPLYPRA--RGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPAL 65
P GG GTP P R P RPP P G+ R + + P P P
Sbjct: 104 PQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPP--QGGNQSQGPPPHPGK 161
Query: 66 PARARPPRENRKRAVPARAARGPPKRPAG---------------GQTGGVEAASGEERSQ 110
P PP+E K +R+AR PP +P G G+ G A G + Q
Sbjct: 162 P-EGPPPQEGNK----SRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQ-Q 215
Query: 111 PR-----RPRRPPPAP---RRPRPAPGRR 131
P+ +P+ PPP P R PRPA G++
Sbjct: 216 PQAPPAGKPQGPPPPPQGGRPPRPAQGQQ 244
Score = 38.1 bits (87), Expect = 0.007
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 20/133 (15%)
Query: 113 RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSH-GHTARVGGT 171
+P+RPPP P +P+ P + + + P + GR + G++ H G R
Sbjct: 46 QPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQ 105
Query: 172 -GDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDP-------RD 223
G+ S G PG +P R Q Q PP P P P +
Sbjct: 106 GGNQSQGTPPPPG-----------KPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQG 154
Query: 224 PAAPRAGPEAPPP 236
P PE PPP
Sbjct: 155 PPPHPGKPEGPPP 167
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 48.9 bits (115), Expect = 4e-06
Identities = 35/100 (35%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKR----AVPARAARGPPKR 91
PPSP R R R RA + A A A RE R R A + GP +
Sbjct: 180 PPSPAARQPEPPPMPRAARSARAATAARAAAAEREEAREERARGCSEASRTSSDSGPSRA 239
Query: 92 PAGGQTGGVEAASGEERSQPRRP-RRPPPAPRRPRPAPGR 130
PA GG AA+ R++PR P P P RP+ A R
Sbjct: 240 PAARVVGGEAAATAAARARPRAPLAAGSPVPVRPQDAAAR 279
Score = 37.7 bits (86), Expect = 0.009
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPP-PAPRRPRPAP--- 128
+ +R+ A+PA+ + P R G G + E P PP PA R+P P P
Sbjct: 136 KRDRQGALPAQRGKSPACRETGVGAEGCRVLTAEAHPVMALPAPPPSPAARQPEPPPMPR 195
Query: 129 ---GRRKSLYEAAPLLTREKGGRSGRRG------DRGDSGWSHGHTARVGGTGDSSA 176
R + A RE+ RG DSG S ARV G G+++A
Sbjct: 196 AARSARAATAARAAAAEREEAREERARGCSEASRTSSDSGPSRAPAARVVG-GEAAA 251
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 48.5 bits (114), Expect = 5e-06
Identities = 73/255 (28%), Positives = 91/255 (35%), Gaps = 39/255 (15%)
Query: 18 PLYPRARGPAIASAGYSRPPSPV----GRARRRGTWLRVLRG----PRAPSPAPALPARA 69
P +P PA A + P + G A RRG LR PRA SPA L
Sbjct: 167 PAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGL 226
Query: 70 RPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPG 129
PR RA AA G R A +G V+ AS R P A RP A
Sbjct: 227 IAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGA-A 285
Query: 130 RRKSLYEAAPLLTREKGGRSGRRGDRGD-----------------SGWSHGHTARVGGTG 172
+S + P R +GG + RG RG+ S W+ R GGT
Sbjct: 286 LPRSGFSGRP---RGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTW 342
Query: 173 ----DSSAGLTTFPGS--SRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDP-RDPA 225
++ G G +R G EP R P ++ P S + +P R P
Sbjct: 343 TSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPP 402
Query: 226 APR---AGPEAPPPA 237
R AGP PA
Sbjct: 403 CARPSGAGPAREGPA 417
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 66 PAR--ARPPRENRKRAVPARAARGPPKRP--------AGGQTGGVEAASGEERSQPR--- 112
PAR + PPR R R +P + + PKR AG G A G + P
Sbjct: 372 PARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARP 431
Query: 113 --RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTR----EKGGRSGRRGDRG 156
R + P P PR PR P S + A R G R+ RR RG
Sbjct: 432 TGRRQDPEPGPRAPRGGPA--SSGWHAGSAAGRGWDPGGGSRARRRAARG 479
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 48.5 bits (114), Expect = 5e-06
Identities = 73/255 (28%), Positives = 91/255 (35%), Gaps = 39/255 (15%)
Query: 18 PLYPRARGPAIASAGYSRPPSPV----GRARRRGTWLRVLRG----PRAPSPAPALPARA 69
P +P PA A + P + G A RRG LR PRA SPA L
Sbjct: 167 PAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGL 226
Query: 70 RPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPG 129
PR RA AA G R A +G V+ AS R P A RP A
Sbjct: 227 IAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGA-A 285
Query: 130 RRKSLYEAAPLLTREKGGRSGRRGDRGD-----------------SGWSHGHTARVGGTG 172
+S + P R +GG + RG RG+ S W+ R GGT
Sbjct: 286 LPRSGFSGRP---RGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTW 342
Query: 173 ----DSSAGLTTFPGS--SRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDP-RDPA 225
++ G G +R G EP R P ++ P S + +P R P
Sbjct: 343 TSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPP 402
Query: 226 APR---AGPEAPPPA 237
R AGP PA
Sbjct: 403 CARPSGAGPAREGPA 417
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 66 PAR--ARPPRENRKRAVPARAARGPPKRP--------AGGQTGGVEAASGEERSQPR--- 112
PAR + PPR R R +P + + PKR AG G A G + P
Sbjct: 372 PARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARP 431
Query: 113 --RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTR----EKGGRSGRRGDRG 156
R + P P PR PR P S + A R G R+ RR RG
Sbjct: 432 TGRRQDPEPGPRAPRGGPA--SSGWHAGSAAGRGWDPGGGSRARRRAARG 479
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 48.5 bits (114), Expect = 5e-06
Identities = 61/230 (26%), Positives = 85/230 (36%), Gaps = 27/230 (11%)
Query: 10 PLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPA-LPAR 68
P GG P+ +GP + RPP P G+ G GP A SP P LP+
Sbjct: 463 PQGGPPQPGPGPQRQGPPLQQ----RPP-PQGQQHLSGL------GPPAGSPLPQRLPSP 511
Query: 69 ARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPR--- 125
P++ +A P +G RP G G AA P+R PP A R+
Sbjct: 512 TSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSG 571
Query: 126 PAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSS 185
PAP + A P + +G G G + ++ G + T P S
Sbjct: 572 PAPPKASG---APPGGQQRQGPPQKPPGPAGPT----RQASQAGPVPRTGPPTTQQPRPS 624
Query: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
G +GR P+ + Q Q PPA + P P + +A P
Sbjct: 625 GPGPAGR---PKPQLAQKPSQDVPPPAT--AAAGGPPHPQLKASPAQAQP 669
Score = 37.7 bits (86), Expect = 0.009
Identities = 42/187 (22%), Positives = 61/187 (32%), Gaps = 32/187 (17%)
Query: 72 PRENRKRAVPARAARG----PPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPA 127
PR+ ++ A P R + G P P G QT ++ + P +RPPP P+P
Sbjct: 419 PRQRQRDASPGRGSHGQTPSPGALPLGRQTS-------QQPAGPPAQQRPPPQGGPPQPG 471
Query: 128 PGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWS-----------------HGHTARVGG 170
PG ++ + PL R G S G
Sbjct: 472 PGPQR---QGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528
Query: 171 TGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAA-PRA 229
G S + PG+ P+R+ P R T + P++ P R
Sbjct: 529 QGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ 588
Query: 230 GPEAPPP 236
GP PP
Sbjct: 589 GPPQKPP 595
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 48.5 bits (114), Expect = 5e-06
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 37/200 (18%)
Query: 23 ARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPAR----ARPPRENR 76
ARGPA +ASAG G R GTW G R ALP+R A P E
Sbjct: 53 ARGPAPLLASAG--------GGRARDGTW-----GVRTKGSGAALPSRPASRAAPRPEAS 99
Query: 77 KRAVPARAARGPPKRPAGGQTGGVEAASG-EERSQPRRPRRPPPAPRRPR---------- 125
+P ARG P GG+ G A G +RS+ R R + +R +
Sbjct: 100 SPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNC 159
Query: 126 ---PAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFP 182
+ GR+ S A E+ + RR R S S ++ + SS+ ++
Sbjct: 160 SASTSQGRKASTAPGA----EERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG 215
Query: 183 GSSRGGFSGREEEPRRERRQ 202
RG + + + +++R++
Sbjct: 216 RKKRGKYKDKRRKKKKKRKK 235
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,831,316
Number of Sequences: 37866
Number of extensions: 1083139
Number of successful extensions: 16799
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 1764
Number of HSP's that attempted gapping in prelim test: 8829
Number of HSP's gapped (non-prelim): 7479
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.