BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|110578657 LOST1 [Homo sapiens] (177 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|110578657 LOST1 [Homo sapiens] 343 6e-95 gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] 101 3e-22 gi|211904185 hypothetical protein LOC387890 [Homo sapiens] 84 8e-17 gi|77681565 NG5 protein [Homo sapiens] 42 3e-04 gi|154707844 transmembrane protein 91 isoform a [Homo sapiens] 40 8e-04 gi|13376347 hypothetical protein LOC79953 [Homo sapiens] 38 0.004 gi|157743286 transmembrane protein 90A [Homo sapiens] 33 0.17 gi|55770880 kelch-like 5 isoform 3 [Homo sapiens] 32 0.29 gi|148612842 interferon-induced transmembrane protein 3 (1-8U) [... 32 0.29 gi|65289292 kelch-like 5 isoform 1 [Homo sapiens] 32 0.29 gi|151101191 interferon induced transmembrane protein 2 (1-8D) [... 32 0.38 gi|148613886 regulatory factor X domain containing 2 [Homo sapiens] 30 1.4 gi|115298645 mitogen-activated protein kinase kinase kinase 14 [... 29 1.9 gi|116235480 leucine zipper transcription regulator 2 [Homo sapi... 29 1.9 gi|154146199 sal-like 3 [Homo sapiens] 29 1.9 gi|150010589 interferon induced transmembrane protein 1 (9-27) [... 29 1.9 gi|190194416 F-box and leucine-rich repeat protein 15 [Homo sapi... 28 4.2 gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b... 28 4.2 gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform... 28 4.2 gi|143770802 mitochondrial ribosomal protein L1 precursor [Homo ... 28 4.2 gi|149588708 transmembrane protein 91 isoform c [Homo sapiens] 28 4.2 gi|149588687 transmembrane protein 91 isoform c [Homo sapiens] 28 4.2 gi|167001141 glypican 1 precursor [Homo sapiens] 28 5.4 gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 27 7.1 gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 27 7.1 gi|22547108 tumor necrosis factor receptor superfamily, member 1... 27 9.3 >gi|110578657 LOST1 [Homo sapiens] Length = 177 Score = 343 bits (879), Expect = 6e-95 Identities = 177/177 (100%), Positives = 177/177 (100%) Query: 1 MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL 60 MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL Sbjct: 1 MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL 60 Query: 61 PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120 PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN Sbjct: 61 PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120 Query: 121 LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK 177 LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK Sbjct: 121 LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK 177 >gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] Length = 340 Score = 101 bits (252), Expect = 3e-22 Identities = 48/105 (45%), Positives = 73/105 (69%), Gaps = 3/105 (2%) Query: 75 PRSPSRASSRRASSIATTSYAQDQEA---PRDYLILAVVACFCPVWPLNLIPLIISIMSR 131 P SP + SR SS + E PRDY+ILA+++CFCP+WP+N++ ++MSR Sbjct: 236 PGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPMWPVNIVAFAYAVMSR 295 Query: 132 SSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQK 176 +S+QQG+VDGA+RLGR+A+LLSI ++ G++II+ + +N V K Sbjct: 296 NSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIASCVINLGVYK 340 >gi|211904185 hypothetical protein LOC387890 [Homo sapiens] Length = 109 Score = 83.6 bits (205), Expect = 8e-17 Identities = 40/102 (39%), Positives = 64/102 (62%) Query: 72 APLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLNLIPLIISIMSR 131 AP P S ++ +D P++YL L +V+CFCP +P+N++ L+ SIMS Sbjct: 5 APSPDFKRALDSSPEANTEDDKTEEDVPMPKNYLWLTIVSCFCPAYPINIVALVFSIMSL 64 Query: 132 SSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFT 173 +S G+ +GARRLGR A+ ++I II+G++II ++ V+FT Sbjct: 65 NSYNDGDYEGARRLGRNAKWVAIASIIIGLLIIGISCAVHFT 106 >gi|77681565 NG5 protein [Homo sapiens] Length = 306 Score = 42.0 bits (97), Expect = 3e-04 Identities = 18/79 (22%), Positives = 40/79 (50%) Query: 96 QDQEAPRDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSIT 155 + + P DY+ +AV+ C WP +I + ++ R+++ +G++ A R AR S Sbjct: 215 EPRRPPHDYMPIAVLTTICCFWPTGIIAIFKAVQVRTALARGDMVSAEIASREARNFSFI 274 Query: 156 LIIMGIVIIMVAVTVNFTV 174 + +GI +++ + + Sbjct: 275 SLAVGIAAMVLCTILTVVI 293 >gi|154707844 transmembrane protein 91 isoform a [Homo sapiens] Length = 172 Score = 40.4 bits (93), Expect = 8e-04 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Query: 61 PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120 P ++S G L P P SS + S P D+L LAV + C WP+ Sbjct: 53 PLPSVSAG-LGEPRPPDVEDMSSSDSDSDWDGGSRLSPFLPHDHLGLAVFSMLCCFWPVG 111 Query: 121 LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAV 168 + ++ + + +G++ GA R A LL + + +G+ A+ Sbjct: 112 IAAFCLAQKTNKAWAKGDIQGAGAASRRAFLLGVLAVGLGVCTYAAAL 159 >gi|13376347 hypothetical protein LOC79953 [Homo sapiens] Length = 258 Score = 38.1 bits (87), Expect = 0.004 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%) Query: 92 TSYAQDQEA--------PRDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQGNVDGAR 143 + Y+ D E+ PRD+L L+V + C WPL + +S + ++ +G++ A Sbjct: 161 SDYSSDTESEDNFLMMPPRDHLGLSVFSMLCCFWPLGIAAFYLSHETNKAVAKGDLHQAS 220 Query: 144 RLGRLARLLSITLIIMGI-VIIMVAVTV 170 R A L++ I +G V + VAV + Sbjct: 221 TSSRRALFLAVLSITIGTGVYVGVAVAL 248 >gi|157743286 transmembrane protein 90A [Homo sapiens] Length = 238 Score = 32.7 bits (73), Expect = 0.17 Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 55 QNSQGLPFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEA---PRDYLILAVVA 111 Q ++ + + +S G ++ L + + +T S ++D PRD+L L + + Sbjct: 110 QAAENVTIQTVSYG-VQEELRDQEDDQEEEESDATSTESESEDNFLTLPPRDHLGLTLFS 168 Query: 112 CFCPVWPLNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAV 168 C WPL + S + ++ +G+ A R A L+ I +G + + V Sbjct: 169 MLCCFWPLGIAAFYFSQGTSKAISKGDFRLASTTSRRALFLATLAIAVGAGLYVAVV 225 >gi|55770880 kelch-like 5 isoform 3 [Homo sapiens] Length = 709 Score = 32.0 bits (71), Expect = 0.29 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%) Query: 11 SAQEPGSAAFLDLPEMEILLTKAENKDD----KTLNLSKTLSGPLDLEQNSQGLPFKAIS 66 +A++ G A +LD PE++ ++ EN+ D +T N S+TLS +E + F+A++ Sbjct: 96 TAEDCGGAHWLDRPEVDDGTSEEENESDSSSCRTSNSSQTLSSCHTMEPCTSDEFFQALN 155 Query: 67 EGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVA 111 H E + + ++ + A D+ P L+L+ V+ Sbjct: 156 --HAEQTFKKMENYLRHKQLCDVILV--AGDRRIPAHRLVLSSVS 196 >gi|148612842 interferon-induced transmembrane protein 3 (1-8U) [Homo sapiens] Length = 133 Score = 32.0 bits (71), Expect = 0.29 Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 10/112 (8%) Query: 62 FKAISEGHLEAPL--PRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVV-ACFCPVWP 118 ++ + E H A L P +P+ +S T + + + + D+++ ++ F Sbjct: 20 YEMLKEEHEVAVLGAPHNPAPPTS-------TVIHIRSETSVPDHVVWSLFNTLFMNPCC 72 Query: 119 LNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTV 170 L I S+ SR G+V GA+ A+ L+I +I+GI++ ++ + + Sbjct: 73 LGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVI 124 >gi|65289292 kelch-like 5 isoform 1 [Homo sapiens] Length = 755 Score = 32.0 bits (71), Expect = 0.29 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%) Query: 11 SAQEPGSAAFLDLPEMEILLTKAENKDD----KTLNLSKTLSGPLDLEQNSQGLPFKAIS 66 +A++ G A +LD PE++ ++ EN+ D +T N S+TLS +E + F+A++ Sbjct: 142 TAEDCGGAHWLDRPEVDDGTSEEENESDSSSCRTSNSSQTLSSCHTMEPCTSDEFFQALN 201 Query: 67 EGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVA 111 H E + + ++ + A D+ P L+L+ V+ Sbjct: 202 --HAEQTFKKMENYLRHKQLCDVILV--AGDRRIPAHRLVLSSVS 242 >gi|151101191 interferon induced transmembrane protein 2 (1-8D) [Homo sapiens] Length = 132 Score = 31.6 bits (70), Expect = 0.38 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 86 ASSIATTSYAQDQEAPRDYLILAVV-ACFCPVWPLNLIPLIISIMSRSSMQQGNVDGARR 144 A ++T + + + + D+++ ++ F L I S+ SR G+V GA+ Sbjct: 38 APPMSTVIHIRSETSVPDHVVWSLFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQA 97 Query: 145 LGRLARLLSITLIIMGIVIIMVAVTV 170 A+ L+I +I+GI + ++ + + Sbjct: 98 YASTAKCLNIWALILGIFMTILLIII 123 >gi|148613886 regulatory factor X domain containing 2 [Homo sapiens] Length = 1460 Score = 29.6 bits (65), Expect = 1.4 Identities = 17/49 (34%), Positives = 24/49 (48%) Query: 45 KTLSGPLDLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRRASSIATTS 93 KTL P+D +Q Q K E L++PLP + S A+S T+ Sbjct: 295 KTLPSPIDAKQQLQRKIQKKQQEQKLQSPLPGESAAKKSESATSNGVTN 343 >gi|115298645 mitogen-activated protein kinase kinase kinase 14 [Homo sapiens] Length = 947 Score = 29.3 bits (64), Expect = 1.9 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Query: 11 SAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGLPFKAISEGHL 70 S+ EP A PE + + + E + + +LS P LE+ Q L +I L Sbjct: 746 SSLEPAPARNPSSPERKATVPEQELQQLEIELFLNSLSQPFSLEEQEQILSCLSIDSLSL 805 Query: 71 EAPLPRSPSRA--SSRRASSIATTSYAQDQEA 100 ++PS+A SSR S S++ EA Sbjct: 806 SDDSEKNPSKASQSSRDTLSSGVHSWSSQAEA 837 >gi|116235480 leucine zipper transcription regulator 2 [Homo sapiens] Length = 1060 Score = 29.3 bits (64), Expect = 1.9 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 5/42 (11%) Query: 10 PSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPL 51 PS+ G AA ++L ME++L +E +++ ++ SGPL Sbjct: 295 PSSPTDGQAALVELHSMEVILNDSEEQEE-----MRSFSGPL 331 >gi|154146199 sal-like 3 [Homo sapiens] Length = 1300 Score = 29.3 bits (64), Expect = 1.9 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 30 LTKAENKDDKTLNLSKTLSGPL-DLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRRASS 88 L EN ++ LS S + DLE S G P A+SE L +PS S R+ S Sbjct: 862 LKSVENGSGESDRLSNDSSSAVGDLESRSAGSP--ALSESSSSQALSPAPSNGESFRSKS 919 Query: 89 IATTSYAQDQEAP 101 + + QE P Sbjct: 920 PGLGAPEEPQEIP 932 >gi|150010589 interferon induced transmembrane protein 1 (9-27) [Homo sapiens] Length = 125 Score = 29.3 bits (64), Expect = 1.9 Identities = 15/45 (33%), Positives = 24/45 (53%) Query: 119 LNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVI 163 L I S+ SR G+V GA+ A+ L+I +I+GI++ Sbjct: 52 LGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILM 96 >gi|190194416 F-box and leucine-rich repeat protein 15 [Homo sapiens] Length = 300 Score = 28.1 bits (61), Expect = 4.2 Identities = 12/24 (50%), Positives = 16/24 (66%) Query: 13 QEPGSAAFLDLPEMEILLTKAENK 36 QEPG+ FLDLP ++LL N+ Sbjct: 12 QEPGAVRFLDLPWEDVLLPHVLNR 35 >gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b [Homo sapiens] Length = 933 Score = 28.1 bits (61), Expect = 4.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Query: 51 LDLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRR 85 ++LEQNS G P E E P+P SP+ + R Sbjct: 453 IELEQNSGGKPSPEGPEEESEGPVPSSPNITMATR 487 >gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform a [Homo sapiens] Length = 950 Score = 28.1 bits (61), Expect = 4.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Query: 51 LDLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRR 85 ++LEQNS G P E E P+P SP+ + R Sbjct: 470 IELEQNSGGKPSPEGPEEESEGPVPSSPNITMATR 504 >gi|143770802 mitochondrial ribosomal protein L1 precursor [Homo sapiens] Length = 325 Score = 28.1 bits (61), Expect = 4.2 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 87 SSIATTSYAQDQEAPRDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQG 137 + IAT + DQ A + AV+ C PLNL P ++ RSS +G Sbjct: 255 TKIATLDMSSDQIAAN---LQAVINEVCRHRPLNLGPFVVRAFLRSSTSEG 302 >gi|149588708 transmembrane protein 91 isoform c [Homo sapiens] Length = 133 Score = 28.1 bits (61), Expect = 4.2 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 61 PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120 P ++S G L P P SS + S P D+L LAV + C WP+ Sbjct: 53 PLPSVSAG-LGEPRPPDVEDMSSSDSDSDWDGGSRLSPFLPHDHLGLAVFSMLCCFWPVG 111 Query: 121 LIPLIISIMSRSS 133 + ++ +R S Sbjct: 112 IAAFCLAQKTRPS 124 >gi|149588687 transmembrane protein 91 isoform c [Homo sapiens] Length = 133 Score = 28.1 bits (61), Expect = 4.2 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 61 PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120 P ++S G L P P SS + S P D+L LAV + C WP+ Sbjct: 53 PLPSVSAG-LGEPRPPDVEDMSSSDSDSDWDGGSRLSPFLPHDHLGLAVFSMLCCFWPVG 111 Query: 121 LIPLIISIMSRSS 133 + ++ +R S Sbjct: 112 IAAFCLAQKTRPS 124 >gi|167001141 glypican 1 precursor [Homo sapiens] Length = 558 Score = 27.7 bits (60), Expect = 5.4 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 16/127 (12%) Query: 10 PSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGLPFKAISE-- 67 P G A ++ PE+E+ +TK + + + K ++ L N + F+ S+ Sbjct: 426 PEVMGDGLANQINNPEVEVDITKPDMTIRQQIMQLKIMTNRLRSAYNGNDVDFQDASDDG 485 Query: 68 ---GHLEAPLPRSPSRASSRRASSIAT-TSYA----QDQEAPRDYLILAVVACFCPVWPL 119 G + L SR SR++SS T ++A +QE + A CP P Sbjct: 486 SGSGSGDGCLDDLCSRKVSRKSSSSRTPLTHALPGLSEQEGQK------TSAASCPQPPT 539 Query: 120 NLIPLII 126 L+PL++ Sbjct: 540 FLLPLLL 546 >gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precursor [Homo sapiens] Length = 513 Score = 27.3 bits (59), Expect = 7.1 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 31 TKAENKDDKTLNLSKTLSGPLDLEQNSQGLPFKAISEGHLEAPLPRSPSR----ASSRRA 86 +K ++++D NLS+ S QN G ++ E +L + S S+ + SR Sbjct: 313 SKGDSQEDSKENLSQEES------QNVDGPSSESSQEANLSSQENSSESQEEVVSESRGD 366 Query: 87 SSIATTSYAQDQE 99 + TTSY +DQE Sbjct: 367 NPDPTTSYVEDQE 379 >gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 precursor [Homo sapiens] Length = 497 Score = 27.3 bits (59), Expect = 7.1 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 10/73 (13%) Query: 31 TKAENKDDKTLNLSKTLSGPLDLEQNSQGLPFKAISEGHLEAPLPRSPSR----ASSRRA 86 +K ++++D NLS+ S QN G ++ E +L + S S+ + SR Sbjct: 297 SKGDSQEDSKENLSQEES------QNVDGPSSESSQEANLSSQENSSESQEEVVSESRGD 350 Query: 87 SSIATTSYAQDQE 99 + TTSY +DQE Sbjct: 351 NPDPTTSYVEDQE 363 >gi|22547108 tumor necrosis factor receptor superfamily, member 10d precursor [Homo sapiens] Length = 386 Score = 26.9 bits (58), Expect = 9.3 Identities = 14/33 (42%), Positives = 20/33 (60%) Query: 145 LGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK 177 LG LA +II+ +VII+ V V F+ +KK Sbjct: 203 LGMLASPYHYLIIIVVLVIILAVVVVGFSCRKK 235 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,942,149 Number of Sequences: 37866 Number of extensions: 241473 Number of successful extensions: 1064 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 1048 Number of HSP's gapped (non-prelim): 26 length of query: 177 length of database: 18,247,518 effective HSP length: 95 effective length of query: 82 effective length of database: 14,650,248 effective search space: 1201320336 effective search space used: 1201320336 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.