Guide to the Human Genome
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Name: LOC169834 Sequence: fasta or formatted (379aa) NCBI GI: 157412253
Description:

hypothetical protein LOC169834

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         12           1
 C cysteine            8.2         31           1
 D aspartate           0.3          1           1
 E glutamate           9.2         35           2
 F phenylalanine       3.7         14           1
 G glycine             5.5         21           1
 H histidine           9.2         35           2
 I isoleucine          4.5         17           1
 K lysine              9.2         35           2
 L leucine             4.7         18           1
 M methionine          0.5          2           1
 N asparagine          3.4         13           1
 P proline             3.7         14           1
 Q glutamine           5.5         21           1
 R arginine            6.1         23           1
 S serine              7.7         29           2
 T threonine           9.5         36           1
 V valine              1.6          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC169834 
ZNF135                0.616   zinc finger protein 135 
ZNF420                0.605   zinc finger protein 420 
ZNF184                0.600   zinc finger protein 184 
ZNF16                 0.598   zinc finger protein 16 
ZNF16                 0.598   zinc finger protein 16 
ZNF287                0.598   zinc finger protein 287 
ZFP2                  0.594   zinc finger protein 2 homolog 
LOC647678             0.592   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.592   PREDICTED: hypothetical protein XP_002343697 
LOC647678             0.587   PREDICTED: similar to zinc finger protein 347 [Homo...
DKFZp686E2433         0.585   hypothetical protein LOC345462 
ZNF167                0.584   zinc finger protein 167 isoform 1 
ZNF665                0.583   zinc finger protein 665 
ZNF160                0.582   zinc finger protein 160 
ZNF160                0.582   zinc finger protein 160 
ZNF160                0.582   zinc finger protein 160 
ZNF658                0.580   zinc finger protein 658 
ZNF345                0.579   zinc finger protein 345 
ZNF502                0.578   zinc finger protein 502 
ZNF502                0.578   zinc finger protein 502 
ZNF502                0.578   zinc finger protein 502 
ZNF502                0.578   zinc finger protein 502 
ZNF568                0.578   zinc finger protein 568 
ZNF470                0.577   zinc finger protein 470 
ZNF347                0.575   zinc finger protein 347 
ZNF83                 0.573   zinc finger protein 83 isoform a 
ZNF83                 0.573   zinc finger protein 83 isoform a 
ZNF83                 0.573   zinc finger protein 83 isoform a 
ZNF83                 0.573   zinc finger protein 83 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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