Guide to the Human Genome
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Name: C12orf60 Sequence: fasta or formatted (245aa) NCBI GI: 157389009
Description:

hypothetical protein LOC144608

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         14           2
 C cysteine            0.8          2           1
 D aspartate           5.3         13           1
 E glutamate           7.3         18           2
 F phenylalanine       4.5         11           3
 G glycine             1.2          3           1
 H histidine           2.0          5           1
 I isoleucine          6.5         16           2
 K lysine             11.0         27           2
 L leucine             9.4         23           2
 M methionine          5.7         14           1
 N asparagine          4.1         10           2
 P proline             2.4          6           2
 Q glutamine           5.3         13           1
 R arginine            2.0          5           1
 S serine             12.7         31           2
 T threonine           6.5         16           2
 V valine              6.5         16           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC144608 
ZNF507                0.023   zinc finger protein 507 
ZNF507                0.023   zinc finger protein 507 
C12orf69              0.023   hypothetical protein LOC440087 
DNAH8                 0.020   dynein, axonemal, heavy polypeptide 8 
KNTC1                 0.018   Rough Deal homolog, centromere/kinetochore protein [H...
IKBKAP                0.016   inhibitor of kappa light polypeptide gene enhancer i...
GARNL4                0.016   GTPase activating Rap/RanGAP domain-like 4 isoform ...
EDEM3                 0.014   ER degradation enhancer, mannosidase alpha-like 3 [...
CKAP2L                0.014   cytoskeleton associated protein 2-like 
SPEF2                 0.014   KPL2 protein isoform 1 
MTUS1                 0.011   mitochondrial tumor suppressor 1 isoform 5 
MTUS1                 0.011   mitochondrial tumor suppressor 1 isoform 1 
MTUS1                 0.011   mitochondrial tumor suppressor 1 isoform 2 
MTUS1                 0.011   mitochondrial tumor suppressor 1 isoform 4 
LOC100131514          0.011   PREDICTED: similar to hCG1747327, partial 
NCAPD3                0.011   non-SMC condensin II complex, subunit D3 
LOC100131031          0.009   PREDICTED: hypothetical protein LOC100131031 
LOC100131031          0.009   PREDICTED: hypothetical protein LOC100131031 
LOC100131031          0.009   PREDICTED: hypothetical protein LOC100131031 
HEATR5A               0.009   HEAT repeat containing 5A 
LOC400986             0.009   PREDICTED: protein immuno-reactive with anti-PTH po...
LOC400986             0.009   PREDICTED: protein immuno-reactive with anti-PTH po...
LRRFIP2               0.009   leucine rich repeat (in FLII) interacting protein 2...
LRRFIP2               0.009   leucine rich repeat (in FLII) interacting protein 2 i...
LRRFIP2               0.009   leucine rich repeat (in FLII) interacting protein 2 i...
HAUS3                 0.007   HAUS augmin-like complex, subunit 3 
SIRT1                 0.007   sirtuin 1 isoform b 
SIRT1                 0.007   sirtuin 1 isoform a 
LOC730658             0.007   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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