Guide to the Human Genome
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Name: CD79B Sequence: fasta or formatted (125aa) NCBI GI: 11038676
Description:

CD79B antigen isoform 2 precursor

Referenced in:

B cells

Other entries for this name:
alt prot [229aa] CD79B antigen isoform 1 precursor
alt prot [230aa] CD79B antigen isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2          9           2
 C cysteine            0.0          0           0
 D aspartate           7.2          9           2
 E glutamate           7.2          9           2
 F phenylalanine       2.4          3           1
 G glycine             5.6          7           1
 H histidine           2.4          3           1
 I isoleucine          8.0         10           2
 K lysine              4.8          6           1
 L leucine            14.4         18           5
 M methionine          3.2          4           1
 N asparagine          1.6          2           1
 P proline             5.6          7           1
 Q glutamine           4.0          5           1
 R arginine            4.8          6           1
 S serine              5.6          7           1
 T threonine           6.4          8           1
 V valine              5.6          7           1
 W tryptophan          1.6          2           1
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD79B antigen isoform 2 precursor 
CD79B                 0.661   CD79B antigen isoform 3 precursor 
CD79B                 0.661   CD79B antigen isoform 1 precursor 
CD79A                 0.040   CD79A antigen isoform 2 precursor 
CD79A                 0.040   CD79A antigen isoform 1 precursor 
VAMP5                 0.018   vesicle-associated membrane protein 5 
ADAMTS4               0.013   ADAM metallopeptidase with thrombospondin type 1 mo...
FAM20B                0.009   hypothetical protein LOC9917 
ROBO2                 0.009   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.009   roundabout, axon guidance receptor, homolog 2 isofor...
PTPRA                 0.009   protein tyrosine phosphatase, receptor type, A isofor...
OCA2                  0.009   oculocutaneous albinism II 
CDH17                 0.009   cadherin 17 precursor 
CDH17                 0.009   cadherin 17 precursor 
C7orf53               0.009   hypothetical protein LOC286006 
C7orf53               0.009   hypothetical protein LOC286006 
SLC26A2               0.004   solute carrier family 26 member 2 
PTPRA                 0.004   protein tyrosine phosphatase, receptor type, A isofo...
PTPRA                 0.004   protein tyrosine phosphatase, receptor type, A isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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