Search of human proteins with 154937352

Search of human proteins with 154937352

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154937352 phytanoyl-CoA dioxygenase domain containing 1
isoform c [Homo sapiens]
         (270 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154937352 phytanoyl-CoA dioxygenase domain containing 1 isofo...   555   e-158
gi|154937350 phytanoyl-CoA dioxygenase domain containing 1 isofo...   542   e-154
gi|154937348 phytanoyl-CoA dioxygenase domain containing 1 isofo...   253   1e-67
gi|83281447 phytanoyl-CoA 2-hydroxylase isoform b precursor [Hom...    51   9e-07
gi|5453884 phytanoyl-CoA 2-hydroxylase isoform a precursor [Homo...    51   9e-07
gi|83367069 cyclin-dependent kinase-like 5 [Homo sapiens]              31   1.3  
gi|4507281 cyclin-dependent kinase-like 5 [Homo sapiens]               31   1.3  
gi|10863987 zona pellucida glycoprotein 4 preproprotein [Homo sa...    30   2.9  
gi|4506049 hematopoietically expressed homeobox [Homo sapiens]         28   8.4  

>gi|154937352 phytanoyl-CoA dioxygenase domain containing 1 isoform
           c [Homo sapiens]
          Length = 270

 Score =  555 bits (1429), Expect = e-158
 Identities = 270/270 (100%), Positives = 270/270 (100%)

Query: 1   MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ 60
           MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ
Sbjct: 1   MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ 60

Query: 61  LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS 120
           LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS
Sbjct: 61  LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS 120

Query: 121 FKVQQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRR 180
           FKVQQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRR
Sbjct: 121 FKVQQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRR 180

Query: 181 MVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYT 240
           MVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYT
Sbjct: 181 MVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYT 240

Query: 241 FHLMEASGTTWSPENWLQPTAELPFPQLYT 270
           FHLMEASGTTWSPENWLQPTAELPFPQLYT
Sbjct: 241 FHLMEASGTTWSPENWLQPTAELPFPQLYT 270


>gi|154937350 phytanoyl-CoA dioxygenase domain containing 1 isoform
           a [Homo sapiens]
          Length = 291

 Score =  542 bits (1397), Expect = e-154
 Identities = 270/291 (92%), Positives = 270/291 (92%), Gaps = 21/291 (7%)

Query: 1   MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ 60
           MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ
Sbjct: 1   MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ 60

Query: 61  LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS 120
           LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS
Sbjct: 61  LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS 120

Query: 121 FKVQ---------------------QPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDA 159
           FKVQ                     QPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDA
Sbjct: 121 FKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDA 180

Query: 160 TLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLI 219
           TLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLI
Sbjct: 181 TLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLI 240

Query: 220 HGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLYT 270
           HGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLYT
Sbjct: 241 HGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLYT 291


>gi|154937348 phytanoyl-CoA dioxygenase domain containing 1 isoform
           b [Homo sapiens]
          Length = 297

 Score =  253 bits (646), Expect = 1e-67
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ 60
           MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ
Sbjct: 1   MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ 60

Query: 61  LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS 120
           LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS
Sbjct: 61  LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS 120

Query: 121 FKVQ 124
           FKVQ
Sbjct: 121 FKVQ 124


>gi|83281447 phytanoyl-CoA 2-hydroxylase isoform b precursor [Homo
           sapiens]
          Length = 238

 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 119 HSFKVQQPHFGGEVSP----HQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHT 174
           H+  + +P   G+ +     HQD  +    P   ++  W A+E  +  NGCL  +PG+H 
Sbjct: 55  HTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHK 114

Query: 175 SGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDR 234
             +         G      F G +   +N   V   +++G  V  H  ++H S QN +  
Sbjct: 115 GSLKPHDYPKWEGGV-NKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQG 173

Query: 235 SRQAYTFHLMEA 246
            R+A + H   A
Sbjct: 174 FRKAISCHFASA 185


>gi|5453884 phytanoyl-CoA 2-hydroxylase isoform a precursor [Homo
           sapiens]
          Length = 338

 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 119 HSFKVQQPHFGGEVSP----HQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHT 174
           H+  + +P   G+ +     HQD  +    P   ++  W A+E  +  NGCL  +PG+H 
Sbjct: 155 HTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHK 214

Query: 175 SGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDR 234
             +         G      F G +   +N   V   +++G  V  H  ++H S QN +  
Sbjct: 215 GSLKPHDYPKWEGGV-NKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQG 273

Query: 235 SRQAYTFHLMEA 246
            R+A + H   A
Sbjct: 274 FRKAISCHFASA 285


>gi|83367069 cyclin-dependent kinase-like 5 [Homo sapiens]
          Length = 1030

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 15/93 (16%)

Query: 118 THSFKVQQPHFGGEV-SPHQDAS-------FLYTEPLGRVLGVWIAVEDATLENGCLWFI 169
           T SF  +Q   GG    PH D          LY +P+ R +G +  V     +N      
Sbjct: 672 TSSFHTRQKSEGGVYHDPHSDDGTAPKENRHLYNDPVPRRVGSFYRVPSPRPDNSF---- 727

Query: 170 PGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARD 202
              H + VS R+   P  S+ GT+    +PA D
Sbjct: 728 ---HENNVSTRVSSLPSESSSGTNHSKRQPAFD 757


>gi|4507281 cyclin-dependent kinase-like 5 [Homo sapiens]
          Length = 1030

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 15/93 (16%)

Query: 118 THSFKVQQPHFGGEV-SPHQDAS-------FLYTEPLGRVLGVWIAVEDATLENGCLWFI 169
           T SF  +Q   GG    PH D          LY +P+ R +G +  V     +N      
Sbjct: 672 TSSFHTRQKSEGGVYHDPHSDDGTAPKENRHLYNDPVPRRVGSFYRVPSPRPDNSF---- 727

Query: 170 PGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARD 202
              H + VS R+   P  S+ GT+    +PA D
Sbjct: 728 ---HENNVSTRVSSLPSESSSGTNHSKRQPAFD 757


>gi|10863987 zona pellucida glycoprotein 4 preproprotein [Homo
           sapiens]
          Length = 540

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 173 HTSGVSRRMVRAPVG----SAPGTSFLGSEPARDNSLFVPTPVQRG 214
           H     R++++ P+      AP T +  S PARD     P+P+ RG
Sbjct: 117 HKVVTERKLLKCPMDLLARDAPDTDWCDSIPARDRLPCAPSPISRG 162


>gi|4506049 hematopoietically expressed homeobox [Homo sapiens]
          Length = 270

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 90  GNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQQP---HFGGEV 132
           G  L P  +++N   HAL  HDP+ K +  S  +Q+P     GG+V
Sbjct: 97  GGPLYPFPRTVNDYTHALLRHDPLGKPLLWSPFLQRPLHKRKGGQV 142


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,600,600
Number of Sequences: 37866
Number of extensions: 536644
Number of successful extensions: 1027
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 9
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.