Guide to the Human Genome
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Name: USP24 Sequence: fasta or formatted (2460aa) NCBI GI: 149192845
Description:

ubiquitin specific protease 24

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2        153           4
 C cysteine            2.1         51           2
 D aspartate           5.2        127           3
 E glutamate           6.9        169           2
 F phenylalanine       4.2        103           2
 G glycine             4.6        113           4
 H histidine           2.2         55           2
 I isoleucine          5.4        133           3
 K lysine              5.6        138           3
 L leucine            12.3        302           4
 M methionine          2.6         63           2
 N asparagine          3.9         96           2
 P proline             4.0         99           2
 Q glutamine           5.0        124           3
 R arginine            4.9        120           3
 S serine              9.8        242           7
 T threonine           4.9        120           2
 V valine              6.1        151           2
 W tryptophan          1.1         28           1
 Y tyrosine            3.0         73           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific protease 24 
USP9X                 0.193   ubiquitin specific protease 9, X-linked isoform 3 [...
USP9X                 0.192   ubiquitin specific protease 9, X-linked isoform 4 [...
USP9Y                 0.189   ubiquitin specific protease 9, Y-linked 
USP34                 0.046   ubiquitin specific protease 34 
USP47                 0.025   ubiquitin specific protease 47 
USP48                 0.024   ubiquitin specific protease 48 isoform b 
USP48                 0.024   ubiquitin specific protease 48 isoform a 
USP7                  0.019   ubiquitin specific peptidase 7 
USP40                 0.019   ubiquitin thioesterase 40 
USP36                 0.016   ubiquitin specific peptidase 36 
USP46                 0.016   ubiquitin specific peptidase 46 isoform 2 
USP46                 0.016   ubiquitin specific peptidase 46 isoform 1 
USP12                 0.015   ubiquitin thiolesterase 12 
USP8                  0.015   ubiquitin specific peptidase 8 
USP8                  0.015   ubiquitin specific peptidase 8 
USP8                  0.015   ubiquitin specific peptidase 8 
USP42                 0.015   ubiquitin specific peptidase 42 
USP41                 0.015   PREDICTED: ubiquitin specific peptidase 41 
USP41                 0.015   PREDICTED: ubiquitin specific peptidase 41 
USP41                 0.015   PREDICTED: ubiquitin specific protease 41 
USP18                 0.015   ubiquitin specific protease 18 
LOC100287144          0.014   PREDICTED: hypothetical protein XP_002342471 
DUB3                  0.014   deubiquitinating enzyme 3 
LOC728373             0.014   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287513          0.014   PREDICTED: hypothetical protein XP_002342480 
LOC100287327          0.014   PREDICTED: hypothetical protein XP_002342475 
LOC728379             0.014   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287238          0.014   PREDICTED: hypothetical protein XP_002342474 
USP17                 0.013   ubiquitin specific peptidase 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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