Search of human proteins with 149158719

Search of human proteins with 149158719

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|149158719 transmembrane protein 206 [Homo sapiens]
         (350 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|149158719 transmembrane protein 206 [Homo sapiens]                 694   0.0  
gi|198041768 synleurin [Homo sapiens]                                  31   1.9  
gi|169204921 PREDICTED: chromosome 12 open reading frame 55 [Hom...    29   7.2  
gi|169205589 PREDICTED: chromosome 12 open reading frame 55 [Hom...    29   7.2  
gi|169203876 PREDICTED: hypothetical protein [Homo sapiens]            29   7.2  
gi|116812579 transmembrane BAX inhibitor motif containing 4 [Hom...    29   7.2  
gi|119220598 apolipoprotein B48 receptor [Homo sapiens]                29   7.2  

>gi|149158719 transmembrane protein 206 [Homo sapiens]
          Length = 350

 Score =  694 bits (1791), Expect = 0.0
 Identities = 350/350 (100%), Positives = 350/350 (100%)

Query: 1   MIRQERSTSYQELSEELVQVVENSELADEQDKETVRVQGPGILPGLDSESASSSIRFSKA 60
           MIRQERSTSYQELSEELVQVVENSELADEQDKETVRVQGPGILPGLDSESASSSIRFSKA
Sbjct: 1   MIRQERSTSYQELSEELVQVVENSELADEQDKETVRVQGPGILPGLDSESASSSIRFSKA 60

Query: 61  CLKNVFSVLLIFIYLLLMAVAVFLVYRTITDFREKLKHPVMSVSYKEVDRYDAPGIALYP 120
           CLKNVFSVLLIFIYLLLMAVAVFLVYRTITDFREKLKHPVMSVSYKEVDRYDAPGIALYP
Sbjct: 61  CLKNVFSVLLIFIYLLLMAVAVFLVYRTITDFREKLKHPVMSVSYKEVDRYDAPGIALYP 120

Query: 121 GQAQLLSCKHHYEVIPPLTSPGQPGDMNCTTQRINYTDPFSNQTVKSALIVQGPREVKKR 180
           GQAQLLSCKHHYEVIPPLTSPGQPGDMNCTTQRINYTDPFSNQTVKSALIVQGPREVKKR
Sbjct: 121 GQAQLLSCKHHYEVIPPLTSPGQPGDMNCTTQRINYTDPFSNQTVKSALIVQGPREVKKR 180

Query: 181 ELVFLQFRLNKSSEDFSAIDYLLFSSFQEFLQSPNRVGFMQACESAYSSWKFSGGFRTWV 240
           ELVFLQFRLNKSSEDFSAIDYLLFSSFQEFLQSPNRVGFMQACESAYSSWKFSGGFRTWV
Sbjct: 181 ELVFLQFRLNKSSEDFSAIDYLLFSSFQEFLQSPNRVGFMQACESAYSSWKFSGGFRTWV 240

Query: 241 KMSLVKTKEEDGREAVEFRQETSVVNYIDQRPAAKKSAQLFFVVFEWKDPFIQKVQDIVT 300
           KMSLVKTKEEDGREAVEFRQETSVVNYIDQRPAAKKSAQLFFVVFEWKDPFIQKVQDIVT
Sbjct: 241 KMSLVKTKEEDGREAVEFRQETSVVNYIDQRPAAKKSAQLFFVVFEWKDPFIQKVQDIVT 300

Query: 301 ANPWNTIALLCGAFLALFKAAEFAKLSIKWMIKIRKRYLKRRGQATSHIS 350
           ANPWNTIALLCGAFLALFKAAEFAKLSIKWMIKIRKRYLKRRGQATSHIS
Sbjct: 301 ANPWNTIALLCGAFLALFKAAEFAKLSIKWMIKIRKRYLKRRGQATSHIS 350


>gi|198041768 synleurin [Homo sapiens]
          Length = 622

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 8/58 (13%)

Query: 46  LDSESASSSIRFSKACLKNV------FSVLLIFIYLLLMAVAVFLVYRTITDFREKLK 97
           L +++AS S + S  C + V      F +LL F ++L   + +FL+Y+ +  F++KLK
Sbjct: 502 LPNDAASMSGKTSLICTQEVEKLNEAFDILLAF-FILACVLIIFLIYK-VVQFKQKLK 557


>gi|169204921 PREDICTED: chromosome 12 open reading frame 55 [Homo
           sapiens]
          Length = 935

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 35  VRVQGPGILPGLDSESASSSIRFSKACLKNVFSVLLIFIYLLLMAVAVFLVYRTITDFRE 94
           +  +GP  L    S    + +       KN  S     IYL+  A+ +F    T T   E
Sbjct: 703 ISTKGPEKLKQSGSTDCFTELNIMNKIKKNTLSKA---IYLMQKALLIFEKDATSTSSWE 759

Query: 95  KLKHPVMSVSYKEVDRYDAPGIALYPGQAQLLSCKHHYEVIPP 137
            L       +Y  + R +A   ALY  Q  L S K     +PP
Sbjct: 760 LLME-----AYSLIQRIEAEQNALYSYQKYLESSKRKKSRVPP 797


>gi|169205589 PREDICTED: chromosome 12 open reading frame 55 [Homo
           sapiens]
          Length = 1241

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 35  VRVQGPGILPGLDSESASSSIRFSKACLKNVFSVLLIFIYLLLMAVAVFLVYRTITDFRE 94
           +  +GP  L    S    + +       KN  S     IYL+  A+ +F    T T   E
Sbjct: 703 ISTKGPEKLKQSGSTDCFTELNIMNKIKKNTLSKA---IYLMQKALLIFEKDATSTSSWE 759

Query: 95  KLKHPVMSVSYKEVDRYDAPGIALYPGQAQLLSCKHHYEVIPP 137
            L       +Y  + R +A   ALY  Q  L S K     +PP
Sbjct: 760 LLME-----AYSLIQRIEAEQNALYSYQKYLESSKRKKSRVPP 797


>gi|169203876 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1241

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 35  VRVQGPGILPGLDSESASSSIRFSKACLKNVFSVLLIFIYLLLMAVAVFLVYRTITDFRE 94
           +  +GP  L    S    + +       KN  S     IYL+  A+ +F    T T   E
Sbjct: 703 ISTKGPEKLKQSGSTDCFTELNIMNKIKKNTLSKA---IYLMQKALLIFEKDATSTSSWE 759

Query: 95  KLKHPVMSVSYKEVDRYDAPGIALYPGQAQLLSCKHHYEVIPP 137
            L       +Y  + R +A   ALY  Q  L S K     +PP
Sbjct: 760 LLME-----AYSLIQRIEAEQNALYSYQKYLESSKRKKSRVPP 797


>gi|116812579 transmembrane BAX inhibitor motif containing 4 [Homo
          sapiens]
          Length = 238

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 48 SESASSSIRFSKACLKNVFSVLLIFIYLLLMAVAVFLVYRTITDF 92
          S  AS+++    A L+ V+S+L + + L  +   VFL + ++  F
Sbjct: 21 SSVASATVHIRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTF 65


>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
          Length = 1088

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 4   QERSTSYQELSEELVQVVENSELA----DEQDKETVRVQGPGILPGLDSE 49
           Q+RS   QE  E   Q V   E       E+++E VR + PG+  G +SE
Sbjct: 150 QDRSGQAQERQESHEQEVNREERLRSWEQEEEEEEVRAREPGMARGAESE 199


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,343,414
Number of Sequences: 37866
Number of extensions: 506419
Number of successful extensions: 1413
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1411
Number of HSP's gapped (non-prelim): 9
length of query: 350
length of database: 18,247,518
effective HSP length: 103
effective length of query: 247
effective length of database: 14,347,320
effective search space: 3543788040
effective search space used: 3543788040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.