Guide to the Human Genome
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Name: TMEM60 Sequence: fasta or formatted (133aa) NCBI GI: 14269580
Description:

transmembrane protein 60

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         11           1
 C cysteine            2.3          3           1
 D aspartate           3.0          4           1
 E glutamate           2.3          3           1
 F phenylalanine       8.3         11           2
 G glycine             3.8          5           1
 H histidine           1.5          2           1
 I isoleucine          6.8          9           1
 K lysine              6.8          9           3
 L leucine            21.1         28           2
 M methionine          4.5          6           1
 N asparagine          3.0          4           1
 P proline             3.0          4           1
 Q glutamine           1.5          2           1
 R arginine            3.8          5           1
 S serine              3.0          4           1
 T threonine           4.5          6           2
 V valine              6.0          8           1
 W tryptophan          4.5          6           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 60 
TMEM185A              0.077   transmembrane protein 185A 
TMEM203               0.044   transmembrane protein 203 
SCN4A                 0.012   voltage-gated sodium channel type 4 alpha 
SCN9A                 0.012   sodium channel, voltage-gated, type IX, alpha 
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.008   calcium channel, voltage-dependent, L type, alpha 1...
HTR2B                 0.004   5-hydroxytryptamine (serotonin) receptor 2B 
DSC2                  0.004   desmocollin 2 isoform Dsc2b preproprotein 
DSC2                  0.004   desmocollin 2 isoform Dsc2a preproprotein 
TUSC5                 0.004   LOST1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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