Guide to the Human Genome
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Name: SPINK7 Sequence: fasta or formatted (85aa) NCBI GI: 14211875
Description:

esophagus cancer-related gene-2

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          3           2
 C cysteine            9.4          8           1
 D aspartate           3.5          3           1
 E glutamate           3.5          3           1
 F phenylalanine       2.4          2           1
 G glycine             7.1          6           2
 H histidine           2.4          2           1
 I isoleucine          5.9          5           1
 K lysine              7.1          6           2
 L leucine            10.6          9           4
 M methionine          1.2          1           1
 N asparagine          2.4          2           1
 P proline             5.9          5           1
 Q glutamine           1.2          1           1
 R arginine            1.2          1           1
 S serine             11.8         10           3
 T threonine           5.9          5           1
 V valine              8.2          7           2
 W tryptophan          0.0          0           0
 Y tyrosine            7.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   esophagus cancer-related gene-2 
SPINK5L2              0.272   Kazal type serine protease inhibitor 5-like 2 
SPINK9                0.241   serine peptidase inhibitor, Kazal type 9 
SPINK6                0.158   serine protease inhibitor, Kazal type 6 
SPINK2                0.127   serine protease inhibitor, Kazal type 2 (acrosin-try...
SPINK8                0.127   serine peptidase inhibitor, Kazal type 8 (putative)...
AGRN                  0.120   agrin 
SPINK5                0.120   serine peptidase inhibitor, Kazal type 5 isoform c ...
SPINK5                0.120   serine peptidase inhibitor, Kazal type 5 isoform b p...
SPINK5                0.120   serine peptidase inhibitor, Kazal type 5 isoform a ...
SPINK1                0.114   serine protease inhibitor, Kazal type 1 precursor [H...
SPINK4                0.114   serine peptidase inhibitor, Kazal type 4 
TMEFF2                0.089   transmembrane protein with EGF-like and two follista...
SPINK5L3              0.082   serine PI Kazal type 5-like 3 
TMEFF1                0.076   transmembrane protein with EGF-like and two follista...
SLCO2A1               0.063   solute carrier organic anion transporter family, me...
FSTL4                 0.063   follistatin-like 4 
FSTL1                 0.057   follistatin-like 1 precursor 
FST                   0.051   follistatin isoform FST317 precursor 
FST                   0.051   follistatin isoform FST344 precursor 
FSTL3                 0.051   follistatin-like 3 glycoprotein precursor 
SLCO5A1               0.044   solute carrier organic anion transporter family, me...
SLCO5A1               0.044   solute carrier organic anion transporter family, me...
SLCO5A1               0.044   solute carrier organic anion transporter family, me...
SPOCK3                0.038   testican 3 isoform 1 
SPOCK3                0.038   testican 3 isoform 2 
FSTL5                 0.038   follistatin-like 5 isoform c 
FSTL5                 0.038   follistatin-like 5 isoform b 
FSTL5                 0.038   follistatin-like 5 isoform a 
SPOCK1                0.025   sparc/osteonectin, cwcv and kazal-like domains proteo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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