BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9945304 calcitonin-related polypeptide, beta [Homo sapiens] (127 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|9945304 calcitonin-related polypeptide, beta [Homo sapiens] 245 8e-66 gi|76880478 calcitonin isoform CGRP preproprotein [Homo sapiens] 214 2e-56 gi|76880484 calcitonin isoform CALCA preproprotein [Homo sapiens] 129 5e-31 gi|4502545 calcitonin isoform CALCA preproprotein [Homo sapiens] 129 5e-31 gi|4557655 islet amyloid polypeptide precursor [Homo sapiens] 46 7e-06 gi|212549738 anaphase-promoting complex subunit 7 isoform b [Hom... 30 0.50 gi|212549736 anaphase-promoting complex subunit 7 isoform a [Hom... 30 0.50 gi|4501945 adrenomedullin [Homo sapiens] 28 1.5 gi|52632381 melanoma antigen family D, 1 isoform a [Homo sapiens] 28 1.9 gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 28 2.5 gi|119943102 CREB binding protein isoform b [Homo sapiens] 27 3.2 gi|119943104 CREB binding protein isoform a [Homo sapiens] 27 3.2 gi|239755335 PREDICTED: hypothetical protein [Homo sapiens] 27 4.2 gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo ... 27 4.2 gi|239744123 PREDICTED: hypothetical protein XP_002343065 [Homo ... 27 4.2 gi|239747656 PREDICTED: similar to mCG116201 [Homo sapiens] 27 5.5 gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 27 5.5 gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 27 5.5 gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 27 5.5 gi|51873067 quiescin Q6 sulfhydryl oxidase 1 isoform b [Homo sap... 27 5.5 gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo sap... 27 5.5 gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 27 5.5 gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 26 7.2 gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 26 7.2 gi|11641269 dipeptidase 2 precursor [Homo sapiens] 26 9.4 gi|119226220 membrane-spanning 4-domains, subfamily A, member 14... 26 9.4 gi|119226217 membrane-spanning 4-domains, subfamily A, member 14... 26 9.4 >gi|9945304 calcitonin-related polypeptide, beta [Homo sapiens] Length = 127 Score = 245 bits (625), Expect = 8e-66 Identities = 127/127 (100%), Positives = 127/127 (100%) Query: 1 MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQM 60 MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQM Sbjct: 1 MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQM 60 Query: 61 KASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKAFGR 120 KASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKAFGR Sbjct: 61 KASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKAFGR 120 Query: 121 RRRDLQA 127 RRRDLQA Sbjct: 121 RRRDLQA 127 >gi|76880478 calcitonin isoform CGRP preproprotein [Homo sapiens] Length = 128 Score = 214 bits (544), Expect = 2e-56 Identities = 112/128 (87%), Positives = 121/128 (94%), Gaps = 1/128 (0%) Query: 1 MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSP-DPATLSKEDARLLLAALVQDYVQ 59 MGF+KFSPFLALSILVL QAGSL AAPFRSALESSP DPATLS+++ARLLLAALVQDYVQ Sbjct: 1 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ 60 Query: 60 MKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKAFG 119 MKASEL+QEQE +GS AQKRAC+TATCVTHRLAGLLSRSGG+VK+NFVPTNVGSKAFG Sbjct: 61 MKASELEQEQEREGSRIIAQKRACDTATCVTHRLAGLLSRSGGVVKNNFVPTNVGSKAFG 120 Query: 120 RRRRDLQA 127 RRRRDLQA Sbjct: 121 RRRRDLQA 128 >gi|76880484 calcitonin isoform CALCA preproprotein [Homo sapiens] Length = 141 Score = 129 bits (325), Expect = 5e-31 Identities = 72/92 (78%), Positives = 80/92 (86%), Gaps = 3/92 (3%) Query: 1 MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSP-DPATLSKEDARLLLAALVQDYVQ 59 MGF+KFSPFLALSILVL QAGSL AAPFRSALESSP DPATLS+++ARLLLAALVQDYVQ Sbjct: 1 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ 60 Query: 60 MKASELKQEQETQGSS--SAAQKRACNTATCV 89 MKASEL+QEQE +GSS S KR N +TC+ Sbjct: 61 MKASELEQEQEREGSSLDSPRSKRCGNLSTCM 92 >gi|4502545 calcitonin isoform CALCA preproprotein [Homo sapiens] Length = 141 Score = 129 bits (325), Expect = 5e-31 Identities = 72/92 (78%), Positives = 80/92 (86%), Gaps = 3/92 (3%) Query: 1 MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSP-DPATLSKEDARLLLAALVQDYVQ 59 MGF+KFSPFLALSILVL QAGSL AAPFRSALESSP DPATLS+++ARLLLAALVQDYVQ Sbjct: 1 MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ 60 Query: 60 MKASELKQEQETQGSS--SAAQKRACNTATCV 89 MKASEL+QEQE +GSS S KR N +TC+ Sbjct: 61 MKASELEQEQEREGSSLDSPRSKRCGNLSTCM 92 >gi|4557655 islet amyloid polypeptide precursor [Homo sapiens] Length = 89 Score = 46.2 bits (108), Expect = 7e-06 Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 54 VQDYVQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNV 113 +Q ++ + + L + T S +KR CNTATC T RLA L S + TNV Sbjct: 6 LQVFLIVLSVALNHLKATPIESHQVEKRKCNTATCATQRLANFLVHSSNNFGAILSSTNV 65 Query: 114 GSKAFGRR 121 GS +G+R Sbjct: 66 GSNTYGKR 73 >gi|212549738 anaphase-promoting complex subunit 7 isoform b [Homo sapiens] Length = 537 Score = 30.0 bits (66), Expect = 0.50 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%) Query: 37 DPATLSKEDARLLLAALVQ--DYVQM---KASELKQEQETQGSSSAAQKRACNTATCVTH 91 DP T K LL AL Q DY++ KA L +EQ+ + + + N + CV H Sbjct: 454 DPVTQEKAKT-LLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 512 Query: 92 RLAG 95 R+ G Sbjct: 513 RILG 516 >gi|212549736 anaphase-promoting complex subunit 7 isoform a [Homo sapiens] Length = 599 Score = 30.0 bits (66), Expect = 0.50 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%) Query: 37 DPATLSKEDARLLLAALVQ--DYVQM---KASELKQEQETQGSSSAAQKRACNTATCVTH 91 DP T K LL AL Q DY++ KA L +EQ+ + + + N + CV H Sbjct: 454 DPVTQEKAKT-LLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 512 Query: 92 RLAG 95 R+ G Sbjct: 513 RILG 516 >gi|4501945 adrenomedullin [Homo sapiens] Length = 185 Score = 28.5 bits (62), Expect = 1.5 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 65 LKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVP-TNVGSKAFGRRRR 123 +K+ +++ + + C TC +LA + + K N P + + + +GRRRR Sbjct: 92 VKRYRQSMNNFQGLRSFGCRFGTCTVQKLAHQIYQFTDKDKDNVAPRSKISPQGYGRRRR 151 >gi|52632381 melanoma antigen family D, 1 isoform a [Homo sapiens] Length = 834 Score = 28.1 bits (61), Expect = 1.9 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Query: 32 LESSPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAAQKRACNTATCVTH 91 L +SP PA S ED+ LL+ L M+A ++ + T +++AA ++ T + Sbjct: 65 LGASPAPAEASVEDSALLMQTL------MEAIQISEAPPTNQATAAASPQSSQPPT--AN 116 Query: 92 RLAGL-LSRSGGMVKSNFVPTNVGSK 116 +A + +S + KS F N +K Sbjct: 117 EMADIQVSAAAARPKSAFKVQNATTK 142 >gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo sapiens] Length = 1940 Score = 27.7 bits (60), Expect = 2.5 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 32 LESSPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAAQKRACNTATCVTH 91 L+S + A+ +A + D M A ELK+EQ+T +K T + H Sbjct: 1738 LQSEVEDASRDARNAEEKAKKAITDAAMM-AEELKKEQDTSAHLERMKKNLEQTVKDLQH 1796 Query: 92 RL--AGLLSRSGGMVKSNFVPTNVGSKAF 118 RL A L+ GG + + T + F Sbjct: 1797 RLDEAEQLALKGGKKQIQKLETRIRELEF 1825 >gi|119943102 CREB binding protein isoform b [Homo sapiens] Length = 2404 Score = 27.3 bits (59), Expect = 3.2 Identities = 12/44 (27%), Positives = 26/44 (59%) Query: 35 SPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAA 78 +P+ A+++ + +L L+Q Q + + +Q+Q+ QGS+ A Sbjct: 2141 NPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAGMA 2184 >gi|119943104 CREB binding protein isoform a [Homo sapiens] Length = 2442 Score = 27.3 bits (59), Expect = 3.2 Identities = 12/44 (27%), Positives = 26/44 (59%) Query: 35 SPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAA 78 +P+ A+++ + +L L+Q Q + + +Q+Q+ QGS+ A Sbjct: 2179 NPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAGMA 2222 >gi|239755335 PREDICTED: hypothetical protein [Homo sapiens] Length = 515 Score = 26.9 bits (58), Expect = 4.2 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 56 DYVQMKASELKQEQETQGSSS--AAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNV 113 D+V MKA + Q TQ + + ++ +A + AT TH + S G+ + P N+ Sbjct: 161 DFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNL 220 Query: 114 GSKA 117 GS A Sbjct: 221 GSLA 224 >gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo sapiens] Length = 302 Score = 26.9 bits (58), Expect = 4.2 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 56 DYVQMKASELKQEQETQGSSS--AAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNV 113 D+V MKA + Q TQ + + ++ +A + AT TH + S G+ + P N+ Sbjct: 161 DFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNL 220 Query: 114 GSKA 117 GS A Sbjct: 221 GSLA 224 >gi|239744123 PREDICTED: hypothetical protein XP_002343065 [Homo sapiens] Length = 302 Score = 26.9 bits (58), Expect = 4.2 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 56 DYVQMKASELKQEQETQGSSS--AAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNV 113 D+V MKA + Q TQ + + ++ +A + AT TH + S G+ + P N+ Sbjct: 161 DFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNL 220 Query: 114 GSKA 117 GS A Sbjct: 221 GSLA 224 >gi|239747656 PREDICTED: similar to mCG116201 [Homo sapiens] Length = 591 Score = 26.6 bits (57), Expect = 5.5 Identities = 11/33 (33%), Positives = 20/33 (60%) Query: 84 NTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSK 116 +TA C +A ++R GG V + F+PT++ + Sbjct: 340 HTAVCGGGLMAAGVTREGGAVTARFLPTHLAGR 372 >gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo sapiens] Length = 1939 Score = 26.6 bits (57), Expect = 5.5 Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 58 VQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA 117 +Q + EL++E E + +S A ++ + + ++ L +GG + Sbjct: 1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174 Query: 118 FGRRRRDLQ 126 F + RRDL+ Sbjct: 1175 FQKMRRDLE 1183 Score = 26.2 bits (56), Expect = 7.2 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 60 MKASELKQEQETQGSSSAAQKRACNTATCVTHRL--AGLLSRSGG 102 M A ELK+EQ+T +K T + HRL A L+ GG Sbjct: 1768 MMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGG 1812 >gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo sapiens] Length = 1941 Score = 26.6 bits (57), Expect = 5.5 Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 58 VQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA 117 +Q + EL++E E + +S A ++ + + ++ L +GG + Sbjct: 1117 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1176 Query: 118 FGRRRRDLQ 126 F + RRDL+ Sbjct: 1177 FQKMRRDLE 1185 >gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo sapiens] Length = 1941 Score = 26.6 bits (57), Expect = 5.5 Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 58 VQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA 117 +Q + EL++E E + +S A ++ + + ++ L +GG + Sbjct: 1117 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1176 Query: 118 FGRRRRDLQ 126 F + RRDL+ Sbjct: 1177 FQKMRRDLE 1185 >gi|51873067 quiescin Q6 sulfhydryl oxidase 1 isoform b [Homo sapiens] Length = 604 Score = 26.6 bits (57), Expect = 5.5 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 8 PFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKED 45 P L L +L L AAP RSAL S DP TL + D Sbjct: 12 PSLLLLLLWLLAVPGANAAP-RSALYSPSDPLTLLQAD 48 >gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo sapiens] Length = 747 Score = 26.6 bits (57), Expect = 5.5 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 8 PFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKED 45 P L L +L L AAP RSAL S DP TL + D Sbjct: 12 PSLLLLLLWLLAVPGANAAP-RSALYSPSDPLTLLQAD 48 >gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo sapiens] Length = 1939 Score = 26.6 bits (57), Expect = 5.5 Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 58 VQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA 117 +Q + EL++E E + +S A ++ + + ++ L +GG + Sbjct: 1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174 Query: 118 FGRRRRDLQ 126 F + RRDL+ Sbjct: 1175 FQKMRRDLE 1183 >gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo sapiens] Length = 1938 Score = 26.2 bits (56), Expect = 7.2 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 60 MKASELKQEQETQGSSSAAQKRACNTATCVTHRL--AGLLSRSGG 102 M A ELK+EQ+T +K T + HRL A L+ GG Sbjct: 1768 MMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGG 1812 >gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo sapiens] Length = 1937 Score = 26.2 bits (56), Expect = 7.2 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 60 MKASELKQEQETQGSSSAAQKRACNTATCVTHRL--AGLLSRSGG 102 M A ELK+EQ+T +K T + HRL A L+ GG Sbjct: 1767 MMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGG 1811 >gi|11641269 dipeptidase 2 precursor [Homo sapiens] Length = 486 Score = 25.8 bits (55), Expect = 9.4 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 54 VQDYVQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMV 104 V D V +A E+ Q S+A + CN+A V + LL ++GG+V Sbjct: 262 VSDAVARRALEVSQAPVIFSHSAA--RGVCNSARNVPDDILQLLKKNGGVV 310 >gi|119226220 membrane-spanning 4-domains, subfamily A, member 14 isoform 2 [Homo sapiens] Length = 662 Score = 25.8 bits (55), Expect = 9.4 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 19 QAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQMKASELKQE--QETQGSSS 76 Q S+ +P S E P P TL K+ + + L + QMK +L+ Q +Q + Sbjct: 216 QKQSILPSPKFSEEEIEPLPPTLEKKPSENMSIQLDSTFKQMKDEDLQSAIVQPSQMQTK 275 Query: 77 AAQKRACNTATCVTH 91 Q +A + +H Sbjct: 276 LLQDQAASLQVFPSH 290 >gi|119226217 membrane-spanning 4-domains, subfamily A, member 14 isoform 1 [Homo sapiens] Length = 679 Score = 25.8 bits (55), Expect = 9.4 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 19 QAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQMKASELKQE--QETQGSSS 76 Q S+ +P S E P P TL K+ + + L + QMK +L+ Q +Q + Sbjct: 233 QKQSILPSPKFSEEEIEPLPPTLEKKPSENMSIQLDSTFKQMKDEDLQSAIVQPSQMQTK 292 Query: 77 AAQKRACNTATCVTH 91 Q +A + +H Sbjct: 293 LLQDQAASLQVFPSH 307 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.128 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,069,753 Number of Sequences: 37866 Number of extensions: 139731 Number of successful extensions: 436 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 411 Number of HSP's gapped (non-prelim): 33 length of query: 127 length of database: 18,247,518 effective HSP length: 90 effective length of query: 37 effective length of database: 14,839,578 effective search space: 549064386 effective search space used: 549064386 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.