Guide to the Human Genome
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Search of human proteins with 9945304

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|9945304 calcitonin-related polypeptide, beta [Homo sapiens]
         (127 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9945304 calcitonin-related polypeptide, beta [Homo sapiens]        245   8e-66
gi|76880478 calcitonin isoform CGRP preproprotein [Homo sapiens]      214   2e-56
gi|76880484 calcitonin isoform CALCA preproprotein [Homo sapiens]     129   5e-31
gi|4502545 calcitonin isoform CALCA preproprotein [Homo sapiens]      129   5e-31
gi|4557655 islet amyloid polypeptide precursor [Homo sapiens]          46   7e-06
gi|212549738 anaphase-promoting complex subunit 7 isoform b [Hom...    30   0.50 
gi|212549736 anaphase-promoting complex subunit 7 isoform a [Hom...    30   0.50 
gi|4501945 adrenomedullin [Homo sapiens]                               28   1.5  
gi|52632381 melanoma antigen family D, 1 isoform a [Homo sapiens]      28   1.9  
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H...    28   2.5  
gi|119943102 CREB binding protein isoform b [Homo sapiens]             27   3.2  
gi|119943104 CREB binding protein isoform a [Homo sapiens]             27   3.2  
gi|239755335 PREDICTED: hypothetical protein [Homo sapiens]            27   4.2  
gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo ...    27   4.2  
gi|239744123 PREDICTED: hypothetical protein XP_002343065 [Homo ...    27   4.2  
gi|239747656 PREDICTED: similar to mCG116201 [Homo sapiens]            27   5.5  
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo...    27   5.5  
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo...    27   5.5  
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo...    27   5.5  
gi|51873067 quiescin Q6 sulfhydryl oxidase 1 isoform b [Homo sap...    27   5.5  
gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo sap...    27   5.5  
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ...    27   5.5  
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo...    26   7.2  
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [...    26   7.2  
gi|11641269 dipeptidase 2 precursor [Homo sapiens]                     26   9.4  
gi|119226220 membrane-spanning 4-domains, subfamily A, member 14...    26   9.4  
gi|119226217 membrane-spanning 4-domains, subfamily A, member 14...    26   9.4  

>gi|9945304 calcitonin-related polypeptide, beta [Homo sapiens]
          Length = 127

 Score =  245 bits (625), Expect = 8e-66
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQM 60
           MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQM
Sbjct: 1   MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQM 60

Query: 61  KASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKAFGR 120
           KASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKAFGR
Sbjct: 61  KASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKAFGR 120

Query: 121 RRRDLQA 127
           RRRDLQA
Sbjct: 121 RRRDLQA 127


>gi|76880478 calcitonin isoform CGRP preproprotein [Homo sapiens]
          Length = 128

 Score =  214 bits (544), Expect = 2e-56
 Identities = 112/128 (87%), Positives = 121/128 (94%), Gaps = 1/128 (0%)

Query: 1   MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSP-DPATLSKEDARLLLAALVQDYVQ 59
           MGF+KFSPFLALSILVL QAGSL AAPFRSALESSP DPATLS+++ARLLLAALVQDYVQ
Sbjct: 1   MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ 60

Query: 60  MKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKAFG 119
           MKASEL+QEQE +GS   AQKRAC+TATCVTHRLAGLLSRSGG+VK+NFVPTNVGSKAFG
Sbjct: 61  MKASELEQEQEREGSRIIAQKRACDTATCVTHRLAGLLSRSGGVVKNNFVPTNVGSKAFG 120

Query: 120 RRRRDLQA 127
           RRRRDLQA
Sbjct: 121 RRRRDLQA 128


>gi|76880484 calcitonin isoform CALCA preproprotein [Homo sapiens]
          Length = 141

 Score =  129 bits (325), Expect = 5e-31
 Identities = 72/92 (78%), Positives = 80/92 (86%), Gaps = 3/92 (3%)

Query: 1  MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSP-DPATLSKEDARLLLAALVQDYVQ 59
          MGF+KFSPFLALSILVL QAGSL AAPFRSALESSP DPATLS+++ARLLLAALVQDYVQ
Sbjct: 1  MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ 60

Query: 60 MKASELKQEQETQGSS--SAAQKRACNTATCV 89
          MKASEL+QEQE +GSS  S   KR  N +TC+
Sbjct: 61 MKASELEQEQEREGSSLDSPRSKRCGNLSTCM 92


>gi|4502545 calcitonin isoform CALCA preproprotein [Homo sapiens]
          Length = 141

 Score =  129 bits (325), Expect = 5e-31
 Identities = 72/92 (78%), Positives = 80/92 (86%), Gaps = 3/92 (3%)

Query: 1  MGFRKFSPFLALSILVLYQAGSLQAAPFRSALESSP-DPATLSKEDARLLLAALVQDYVQ 59
          MGF+KFSPFLALSILVL QAGSL AAPFRSALESSP DPATLS+++ARLLLAALVQDYVQ
Sbjct: 1  MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQ 60

Query: 60 MKASELKQEQETQGSS--SAAQKRACNTATCV 89
          MKASEL+QEQE +GSS  S   KR  N +TC+
Sbjct: 61 MKASELEQEQEREGSSLDSPRSKRCGNLSTCM 92


>gi|4557655 islet amyloid polypeptide precursor [Homo sapiens]
          Length = 89

 Score = 46.2 bits (108), Expect = 7e-06
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 54  VQDYVQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNV 113
           +Q ++ + +  L   + T   S   +KR CNTATC T RLA  L  S     +    TNV
Sbjct: 6   LQVFLIVLSVALNHLKATPIESHQVEKRKCNTATCATQRLANFLVHSSNNFGAILSSTNV 65

Query: 114 GSKAFGRR 121
           GS  +G+R
Sbjct: 66  GSNTYGKR 73


>gi|212549738 anaphase-promoting complex subunit 7 isoform b [Homo
           sapiens]
          Length = 537

 Score = 30.0 bits (66), Expect = 0.50
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 37  DPATLSKEDARLLLAALVQ--DYVQM---KASELKQEQETQGSSSAAQKRACNTATCVTH 91
           DP T  K    LL  AL Q  DY++    KA  L +EQ+ +   +  +    N + CV H
Sbjct: 454 DPVTQEKAKT-LLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 512

Query: 92  RLAG 95
           R+ G
Sbjct: 513 RILG 516


>gi|212549736 anaphase-promoting complex subunit 7 isoform a [Homo
           sapiens]
          Length = 599

 Score = 30.0 bits (66), Expect = 0.50
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 37  DPATLSKEDARLLLAALVQ--DYVQM---KASELKQEQETQGSSSAAQKRACNTATCVTH 91
           DP T  K    LL  AL Q  DY++    KA  L +EQ+ +   +  +    N + CV H
Sbjct: 454 DPVTQEKAKT-LLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 512

Query: 92  RLAG 95
           R+ G
Sbjct: 513 RILG 516


>gi|4501945 adrenomedullin [Homo sapiens]
          Length = 185

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 65  LKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVP-TNVGSKAFGRRRR 123
           +K+ +++  +    +   C   TC   +LA  + +     K N  P + +  + +GRRRR
Sbjct: 92  VKRYRQSMNNFQGLRSFGCRFGTCTVQKLAHQIYQFTDKDKDNVAPRSKISPQGYGRRRR 151


>gi|52632381 melanoma antigen family D, 1 isoform a [Homo sapiens]
          Length = 834

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 32  LESSPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAAQKRACNTATCVTH 91
           L +SP PA  S ED+ LL+  L      M+A ++ +   T  +++AA  ++    T   +
Sbjct: 65  LGASPAPAEASVEDSALLMQTL------MEAIQISEAPPTNQATAAASPQSSQPPT--AN 116

Query: 92  RLAGL-LSRSGGMVKSNFVPTNVGSK 116
            +A + +S +    KS F   N  +K
Sbjct: 117 EMADIQVSAAAARPKSAFKVQNATTK 142


>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
            sapiens]
          Length = 1940

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 32   LESSPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAAQKRACNTATCVTH 91
            L+S  + A+    +A       + D   M A ELK+EQ+T       +K    T   + H
Sbjct: 1738 LQSEVEDASRDARNAEEKAKKAITDAAMM-AEELKKEQDTSAHLERMKKNLEQTVKDLQH 1796

Query: 92   RL--AGLLSRSGGMVKSNFVPTNVGSKAF 118
            RL  A  L+  GG  +   + T +    F
Sbjct: 1797 RLDEAEQLALKGGKKQIQKLETRIRELEF 1825


>gi|119943102 CREB binding protein isoform b [Homo sapiens]
          Length = 2404

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query: 35   SPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAA 78
            +P+ A+++ +   +L   L+Q   Q +  + +Q+Q+ QGS+  A
Sbjct: 2141 NPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAGMA 2184


>gi|119943104 CREB binding protein isoform a [Homo sapiens]
          Length = 2442

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query: 35   SPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAA 78
            +P+ A+++ +   +L   L+Q   Q +  + +Q+Q+ QGS+  A
Sbjct: 2179 NPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAGMA 2222


>gi|239755335 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 515

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 56  DYVQMKASELKQEQETQGSSS--AAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNV 113
           D+V MKA +    Q TQ + +  ++  +A + AT  TH    + S   G+   +  P N+
Sbjct: 161 DFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNL 220

Query: 114 GSKA 117
           GS A
Sbjct: 221 GSLA 224


>gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo
           sapiens]
          Length = 302

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 56  DYVQMKASELKQEQETQGSSS--AAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNV 113
           D+V MKA +    Q TQ + +  ++  +A + AT  TH    + S   G+   +  P N+
Sbjct: 161 DFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNL 220

Query: 114 GSKA 117
           GS A
Sbjct: 221 GSLA 224


>gi|239744123 PREDICTED: hypothetical protein XP_002343065 [Homo
           sapiens]
          Length = 302

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 56  DYVQMKASELKQEQETQGSSS--AAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNV 113
           D+V MKA +    Q TQ + +  ++  +A + AT  TH    + S   G+   +  P N+
Sbjct: 161 DFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNL 220

Query: 114 GSKA 117
           GS A
Sbjct: 221 GSLA 224


>gi|239747656 PREDICTED: similar to mCG116201 [Homo sapiens]
          Length = 591

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 84  NTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSK 116
           +TA C    +A  ++R GG V + F+PT++  +
Sbjct: 340 HTAVCGGGLMAAGVTREGGAVTARFLPTHLAGR 372


>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
            sapiens]
          Length = 1939

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 58   VQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA 117
            +Q +  EL++E E + +S A  ++  +  +     ++  L  +GG   +           
Sbjct: 1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query: 118  FGRRRRDLQ 126
            F + RRDL+
Sbjct: 1175 FQKMRRDLE 1183



 Score = 26.2 bits (56), Expect = 7.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 60   MKASELKQEQETQGSSSAAQKRACNTATCVTHRL--AGLLSRSGG 102
            M A ELK+EQ+T       +K    T   + HRL  A  L+  GG
Sbjct: 1768 MMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGG 1812


>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 58   VQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA 117
            +Q +  EL++E E + +S A  ++  +  +     ++  L  +GG   +           
Sbjct: 1117 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1176

Query: 118  FGRRRRDLQ 126
            F + RRDL+
Sbjct: 1177 FQKMRRDLE 1185


>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 58   VQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA 117
            +Q +  EL++E E + +S A  ++  +  +     ++  L  +GG   +           
Sbjct: 1117 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1176

Query: 118  FGRRRRDLQ 126
            F + RRDL+
Sbjct: 1177 FQKMRRDLE 1185


>gi|51873067 quiescin Q6 sulfhydryl oxidase 1 isoform b [Homo
          sapiens]
          Length = 604

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 8  PFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKED 45
          P L L +L L       AAP RSAL S  DP TL + D
Sbjct: 12 PSLLLLLLWLLAVPGANAAP-RSALYSPSDPLTLLQAD 48


>gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo
          sapiens]
          Length = 747

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 8  PFLALSILVLYQAGSLQAAPFRSALESSPDPATLSKED 45
          P L L +L L       AAP RSAL S  DP TL + D
Sbjct: 12 PSLLLLLLWLLAVPGANAAP-RSALYSPSDPLTLLQAD 48


>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
            sapiens]
          Length = 1939

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 58   VQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKA 117
            +Q +  EL++E E + +S A  ++  +  +     ++  L  +GG   +           
Sbjct: 1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query: 118  FGRRRRDLQ 126
            F + RRDL+
Sbjct: 1175 FQKMRRDLE 1183


>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
            sapiens]
          Length = 1938

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 60   MKASELKQEQETQGSSSAAQKRACNTATCVTHRL--AGLLSRSGG 102
            M A ELK+EQ+T       +K    T   + HRL  A  L+  GG
Sbjct: 1768 MMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGG 1812


>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
            sapiens]
          Length = 1937

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 60   MKASELKQEQETQGSSSAAQKRACNTATCVTHRL--AGLLSRSGG 102
            M A ELK+EQ+T       +K    T   + HRL  A  L+  GG
Sbjct: 1767 MMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGG 1811


>gi|11641269 dipeptidase 2 precursor [Homo sapiens]
          Length = 486

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 54  VQDYVQMKASELKQEQETQGSSSAAQKRACNTATCVTHRLAGLLSRSGGMV 104
           V D V  +A E+ Q       S+A  +  CN+A  V   +  LL ++GG+V
Sbjct: 262 VSDAVARRALEVSQAPVIFSHSAA--RGVCNSARNVPDDILQLLKKNGGVV 310


>gi|119226220 membrane-spanning 4-domains, subfamily A, member 14
           isoform 2 [Homo sapiens]
          Length = 662

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 19  QAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQMKASELKQE--QETQGSSS 76
           Q  S+  +P  S  E  P P TL K+ +  +   L   + QMK  +L+    Q +Q  + 
Sbjct: 216 QKQSILPSPKFSEEEIEPLPPTLEKKPSENMSIQLDSTFKQMKDEDLQSAIVQPSQMQTK 275

Query: 77  AAQKRACNTATCVTH 91
             Q +A +     +H
Sbjct: 276 LLQDQAASLQVFPSH 290


>gi|119226217 membrane-spanning 4-domains, subfamily A, member 14
           isoform 1 [Homo sapiens]
          Length = 679

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 19  QAGSLQAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQMKASELKQE--QETQGSSS 76
           Q  S+  +P  S  E  P P TL K+ +  +   L   + QMK  +L+    Q +Q  + 
Sbjct: 233 QKQSILPSPKFSEEEIEPLPPTLEKKPSENMSIQLDSTFKQMKDEDLQSAIVQPSQMQTK 292

Query: 77  AAQKRACNTATCVTH 91
             Q +A +     +H
Sbjct: 293 LLQDQAASLQVFPSH 307


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.128    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,069,753
Number of Sequences: 37866
Number of extensions: 139731
Number of successful extensions: 436
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 33
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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