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Search of human proteins with 94721338
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94721338 hypothetical protein LOC54629 isoform b [Homo
sapiens]
(620 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens] 1244 0.0
gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens] 1240 0.0
gi|253795490 hypothetical protein LOC55793 isoform 4 [Homo sapiens] 424 e-119
gi|253795488 hypothetical protein LOC55793 isoform 3 [Homo sapiens] 424 e-119
gi|31377841 hypothetical protein LOC55793 isoform 1 [Homo sapiens] 424 e-119
gi|253795492 hypothetical protein LOC55793 isoform 2 [Homo sapiens] 374 e-103
gi|94158609 hypothetical protein LOC55793 isoform 2 [Homo sapiens] 374 e-103
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 47 4e-05
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 46 9e-05
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 46 9e-05
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 44 6e-04
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 43 8e-04
gi|93141214 sodium channel, voltage-gated, type II, alpha isofor... 43 0.001
gi|93141212 sodium channel, voltage-gated, type II, alpha isofor... 43 0.001
gi|93141210 sodium channel, voltage-gated, type II, alpha isofor... 43 0.001
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 42 0.001
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 42 0.001
gi|153070260 myristoylated alanine-rich protein kinase C substra... 42 0.002
gi|117938759 GNAS complex locus XLas [Homo sapiens] 41 0.004
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 41 0.004
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 40 0.005
gi|91208420 bassoon protein [Homo sapiens] 40 0.005
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.006
gi|30795231 brain abundant, membrane attached signal protein 1 [... 39 0.011
gi|28269693 xylosyltransferase I [Homo sapiens] 39 0.011
gi|57864582 hornerin [Homo sapiens] 39 0.014
gi|167736355 mucin 4 isoform a [Homo sapiens] 39 0.014
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 39 0.019
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.024
gi|33286444 mastermind-like 2 [Homo sapiens] 38 0.024
>gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens]
Length = 620
Score = 1244 bits (3220), Expect = 0.0
Identities = 620/620 (100%), Positives = 620/620 (100%)
Query: 1 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR 60
MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR
Sbjct: 1 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR 60
Query: 61 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG 120
RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG
Sbjct: 61 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG 120
Query: 121 HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS 180
HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS
Sbjct: 121 HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS 180
Query: 181 NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ 240
NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ
Sbjct: 181 NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ 240
Query: 241 SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG 300
SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG
Sbjct: 241 SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG 300
Query: 301 DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDL 360
DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDL
Sbjct: 301 DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDL 360
Query: 361 LDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTA 420
LDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTA
Sbjct: 361 LDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTA 420
Query: 421 TQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLH 480
TQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLH
Sbjct: 421 TQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLH 480
Query: 481 NVDGDGNFCDSEFHLRPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGI 540
NVDGDGNFCDSEFHLRPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGI
Sbjct: 481 NVDGDGNFCDSEFHLRPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGI 540
Query: 541 SDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASPSSGRQSGNSERKR 600
SDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASPSSGRQSGNSERKR
Sbjct: 541 SDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASPSSGRQSGNSERKR 600
Query: 601 KEPREKDKEKEKEKNSCVIL 620
KEPREKDKEKEKEKNSCVIL
Sbjct: 601 KEPREKDKEKEKEKNSCVIL 620
>gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens]
Length = 621
Score = 1240 bits (3208), Expect = 0.0
Identities = 620/621 (99%), Positives = 620/621 (99%), Gaps = 1/621 (0%)
Query: 1 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR 60
MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR
Sbjct: 1 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR 60
Query: 61 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG 120
RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG
Sbjct: 61 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG 120
Query: 121 HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS 180
HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS
Sbjct: 121 HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS 180
Query: 181 NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ 240
NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ
Sbjct: 181 NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ 240
Query: 241 SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG 300
SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG
Sbjct: 241 SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG 300
Query: 301 DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDL 360
DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDL
Sbjct: 301 DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDL 360
Query: 361 LDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTA 420
LDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTA
Sbjct: 361 LDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTA 420
Query: 421 TQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLH 480
TQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLH
Sbjct: 421 TQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLH 480
Query: 481 NVDGDGNFCDSEFHLRPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGI 540
NVDGDGNFCDSEFHLRPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGI
Sbjct: 481 NVDGDGNFCDSEFHLRPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGI 540
Query: 541 SDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQA-QGQPAQASPSSGRQSGNSERK 599
SDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQA QGQPAQASPSSGRQSGNSERK
Sbjct: 541 SDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQQGQPAQASPSSGRQSGNSERK 600
Query: 600 RKEPREKDKEKEKEKNSCVIL 620
RKEPREKDKEKEKEKNSCVIL
Sbjct: 601 RKEPREKDKEKEKEKNSCVIL 621
>gi|253795490 hypothetical protein LOC55793 isoform 4 [Homo sapiens]
Length = 374
Score = 424 bits (1091), Expect = e-119
Identities = 221/380 (58%), Positives = 272/380 (71%), Gaps = 25/380 (6%)
Query: 234 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAE 293
+ R P Y +KWI WK E TPIITQ+ NGPCPLLAI+N+L L WKVKLPP E+IT++
Sbjct: 10 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 69
Query: 294 QLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTP 353
+LM +LG+ +L KP+E SE +LN++QN+ DAM +L KL TGLDVNVRFTGV FEYTP
Sbjct: 70 ELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTP 129
Query: 354 ECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAE 413
EC VFDLL IPLYHGWLVDPQ + V+AVG SYNQLVE+II+CK S ++ LV+EG +AE
Sbjct: 130 ECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAE 189
Query: 414 QFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEK 473
QFL TA QLTYHGLCELT+ +EGEL VFFRNNHFSTMTK+K LYLLVTDQGFL EE+
Sbjct: 190 QFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQ 249
Query: 474 VVWESLHNVDGDGNFCDSEFHLR------PPSDPETVYKGQQDQIDQDYLMALSLQQEQQ 527
VVWESLHNVDGD FCDS+FHL P ++ + +Q Q+DQDYL+ALSLQQ+Q
Sbjct: 250 VVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQ- 308
Query: 528 SQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASP 587
+ P G++DLELA++LQ+EE Y Q+Q QG+ A
Sbjct: 309 ------PRGPLGLTDLELAQQLQQEE------YQQQQAAQPVRMRTRVLSLQGRGA---- 352
Query: 588 SSGRQSGNSERKRKEPREKD 607
+SGR +G ER+++ E D
Sbjct: 353 TSGRPAG--ERRQRPKHESD 370
>gi|253795488 hypothetical protein LOC55793 isoform 3 [Homo sapiens]
Length = 517
Score = 424 bits (1091), Expect = e-119
Identities = 221/380 (58%), Positives = 272/380 (71%), Gaps = 25/380 (6%)
Query: 234 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAE 293
+ R P Y +KWI WK E TPIITQ+ NGPCPLLAI+N+L L WKVKLPP E+IT++
Sbjct: 153 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 212
Query: 294 QLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTP 353
+LM +LG+ +L KP+E SE +LN++QN+ DAM +L KL TGLDVNVRFTGV FEYTP
Sbjct: 213 ELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTP 272
Query: 354 ECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAE 413
EC VFDLL IPLYHGWLVDPQ + V+AVG SYNQLVE+II+CK S ++ LV+EG +AE
Sbjct: 273 ECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAE 332
Query: 414 QFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEK 473
QFL TA QLTYHGLCELT+ +EGEL VFFRNNHFSTMTK+K LYLLVTDQGFL EE+
Sbjct: 333 QFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQ 392
Query: 474 VVWESLHNVDGDGNFCDSEFHLR------PPSDPETVYKGQQDQIDQDYLMALSLQQEQQ 527
VVWESLHNVDGD FCDS+FHL P ++ + +Q Q+DQDYL+ALSLQQ+Q
Sbjct: 393 VVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQ- 451
Query: 528 SQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASP 587
+ P G++DLELA++LQ+EE Y Q+Q QG+ A
Sbjct: 452 ------PRGPLGLTDLELAQQLQQEE------YQQQQAAQPVRMRTRVLSLQGRGA---- 495
Query: 588 SSGRQSGNSERKRKEPREKD 607
+SGR +G ER+++ E D
Sbjct: 496 TSGRPAG--ERRQRPKHESD 513
>gi|31377841 hypothetical protein LOC55793 isoform 1 [Homo sapiens]
Length = 469
Score = 424 bits (1091), Expect = e-119
Identities = 221/380 (58%), Positives = 272/380 (71%), Gaps = 25/380 (6%)
Query: 234 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAE 293
+ R P Y +KWI WK E TPIITQ+ NGPCPLLAI+N+L L WKVKLPP E+IT++
Sbjct: 105 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 164
Query: 294 QLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTP 353
+LM +LG+ +L KP+E SE +LN++QN+ DAM +L KL TGLDVNVRFTGV FEYTP
Sbjct: 165 ELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTP 224
Query: 354 ECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAE 413
EC VFDLL IPLYHGWLVDPQ + V+AVG SYNQLVE+II+CK S ++ LV+EG +AE
Sbjct: 225 ECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAE 284
Query: 414 QFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEK 473
QFL TA QLTYHGLCELT+ +EGEL VFFRNNHFSTMTK+K LYLLVTDQGFL EE+
Sbjct: 285 QFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQ 344
Query: 474 VVWESLHNVDGDGNFCDSEFHLR------PPSDPETVYKGQQDQIDQDYLMALSLQQEQQ 527
VVWESLHNVDGD FCDS+FHL P ++ + +Q Q+DQDYL+ALSLQQ+Q
Sbjct: 345 VVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQ- 403
Query: 528 SQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASP 587
+ P G++DLELA++LQ+EE Y Q+Q QG+ A
Sbjct: 404 ------PRGPLGLTDLELAQQLQQEE------YQQQQAAQPVRMRTRVLSLQGRGA---- 447
Query: 588 SSGRQSGNSERKRKEPREKD 607
+SGR +G ER+++ E D
Sbjct: 448 TSGRPAG--ERRQRPKHESD 465
>gi|253795492 hypothetical protein LOC55793 isoform 2 [Homo sapiens]
Length = 327
Score = 374 bits (959), Expect = e-103
Identities = 197/342 (57%), Positives = 245/342 (71%), Gaps = 25/342 (7%)
Query: 272 LNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILH 331
+N+L L WKVKLPP E+IT+++LM +LG+ +L KP+E SE +LN++QN+ DAM +L
Sbjct: 1 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 60
Query: 332 KLQTGLDVNVRFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLV 391
KL TGLDVNVRFTGV FEYTPEC VFDLL IPLYHGWLVDPQ + V+AVG SYNQLV
Sbjct: 61 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 120
Query: 392 EKIISCKQSDNSELVSEGFVAEQFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFST 451
E+II+CK S ++ LV+EG +AEQFL TA QLTYHGLCELT+ +EGEL VFFRNNHFST
Sbjct: 121 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 180
Query: 452 MTKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFHLR------PPSDPETVY 505
MTK+K LYLLVTDQGFL EE+VVWESLHNVDGD FCDS+FHL P ++ +
Sbjct: 181 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 240
Query: 506 KGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQE 565
+Q Q+DQDYL+ALSLQQ+Q + P G++DLELA++LQ+EE Y Q+Q
Sbjct: 241 PEKQLQVDQDYLIALSLQQQQ-------PRGPLGLTDLELAQQLQQEE------YQQQQA 287
Query: 566 QAAAAAAAASTQAQGQPAQASPSSGRQSGNSERKRKEPREKD 607
QG+ A +SGR +G ER+++ E D
Sbjct: 288 AQPVRMRTRVLSLQGRGA----TSGRPAG--ERRQRPKHESD 323
>gi|94158609 hypothetical protein LOC55793 isoform 2 [Homo sapiens]
Length = 327
Score = 374 bits (959), Expect = e-103
Identities = 197/342 (57%), Positives = 245/342 (71%), Gaps = 25/342 (7%)
Query: 272 LNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILH 331
+N+L L WKVKLPP E+IT+++LM +LG+ +L KP+E SE +LN++QN+ DAM +L
Sbjct: 1 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 60
Query: 332 KLQTGLDVNVRFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLV 391
KL TGLDVNVRFTGV FEYTPEC VFDLL IPLYHGWLVDPQ + V+AVG SYNQLV
Sbjct: 61 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 120
Query: 392 EKIISCKQSDNSELVSEGFVAEQFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFST 451
E+II+CK S ++ LV+EG +AEQFL TA QLTYHGLCELT+ +EGEL VFFRNNHFST
Sbjct: 121 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 180
Query: 452 MTKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFHLR------PPSDPETVY 505
MTK+K LYLLVTDQGFL EE+VVWESLHNVDGD FCDS+FHL P ++ +
Sbjct: 181 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 240
Query: 506 KGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQE 565
+Q Q+DQDYL+ALSLQQ+Q + P G++DLELA++LQ+EE Y Q+Q
Sbjct: 241 PEKQLQVDQDYLIALSLQQQQ-------PRGPLGLTDLELAQQLQQEE------YQQQQA 287
Query: 566 QAAAAAAAASTQAQGQPAQASPSSGRQSGNSERKRKEPREKD 607
QG+ A +SGR +G ER+++ E D
Sbjct: 288 AQPVRMRTRVLSLQGRGA----TSGRPAG--ERRQRPKHESD 323
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 47.4 bits (111), Expect = 4e-05
Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 46/229 (20%)
Query: 14 GVAAGPASGTGSSQEGLQE----TRLAAGDGPGV-------------------------W 44
G G ASG G++ + Q+ +++A G G GV +
Sbjct: 178 GGGGGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASF 237
Query: 45 AAETSGGNGL---GAAAARRSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAP 101
AAE +G L GAAA SL + +P+ S S+SA L L
Sbjct: 238 AAEQAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVY 297
Query: 102 LRGQYKVTASPETAVAGVG-----------HELGTAGDAGARPDLAGTCQAELTAAGSEE 150
L G ++SP V GVG +E AG + P L+G A + A
Sbjct: 298 LFGGLGTSSSP---VGGVGAGADPSDPLGLYEEEGAGCSPDAPSLSGRSSAASSPAAGRS 354
Query: 151 PSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPSSCEFNSEEGAEN 199
P+ G +S + P +PS S + S+ S SS +S++ E+
Sbjct: 355 PADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFED 403
Score = 33.1 bits (74), Expect = 0.78
Identities = 66/254 (25%), Positives = 78/254 (30%), Gaps = 68/254 (26%)
Query: 3 SSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRS 62
S+ S +P E G G + G G G G G ++ GG G + S
Sbjct: 144 SAAASSKPGEKGDKVGGSGGGGH------------GGGGGGGSSNAGGGGGGASGGGANS 191
Query: 63 LPDSASPAGSPEVPGP----CSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAG 118
P GS G A L L G AAA A + + E A A
Sbjct: 192 KPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAA------AASFAAEQAGAA 245
Query: 119 VGHELGTAGD-----------AGARPDLAGTCQAELTAAGSEEPSSA-------GGLSSS 160
LG A D A A A + A L A G GGL +S
Sbjct: 246 ALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYLFGGLGTS 305
Query: 161 CS---------DPSPP---------GESPSLDSLESFSNLHSFPSSCEFNSEEGAENRVP 202
S DPS P G SP SL S+ S P A R P
Sbjct: 306 SSPVGGVGAGADPSDPLGLYEEEGAGCSPDAPSLSGRSSAASSP----------AAGRSP 355
Query: 203 EEEEGAAVLPGAVP 216
+ G A L A P
Sbjct: 356 ADHRGYASLRAASP 369
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 46.2 bits (108), Expect = 9e-05
Identities = 56/209 (26%), Positives = 72/209 (34%), Gaps = 24/209 (11%)
Query: 18 GPASGTGSSQEGLQETRLAAGDGPGV--------WAAETSG--GNGLGAAAARRSLPDSA 67
GPA + E + + GPGV W TSG G G G R +P +
Sbjct: 20 GPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGAR-VPTKS 78
Query: 68 SPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAG 127
P G P AG + + PAA L G +K++ SP AG
Sbjct: 79 VPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQM-------AAG 131
Query: 128 DAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPS 187
AG R G LT+ G E P A G+ DP SL + S
Sbjct: 132 AAGCRTQARG---QRLTSRGRESP-EATGVPERRGDPETRRNRKSLTPGSGEFGVRS--Q 185
Query: 188 SCEFNSEEGAENRVPEEEEGAAVLPGAVP 216
SC+ E E + + A PG P
Sbjct: 186 SCDSTVPESLERALWAQSSQLAGGPGLAP 214
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 46.2 bits (108), Expect = 9e-05
Identities = 56/209 (26%), Positives = 72/209 (34%), Gaps = 24/209 (11%)
Query: 18 GPASGTGSSQEGLQETRLAAGDGPGV--------WAAETSG--GNGLGAAAARRSLPDSA 67
GPA + E + + GPGV W TSG G G G R +P +
Sbjct: 20 GPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGAR-VPTKS 78
Query: 68 SPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAG 127
P G P AG + + PAA L G +K++ SP AG
Sbjct: 79 VPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQM-------AAG 131
Query: 128 DAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPS 187
AG R G LT+ G E P A G+ DP SL + S
Sbjct: 132 AAGCRTQARG---QRLTSRGRESP-EATGVPERRGDPETRRNRKSLTPGSGEFGVRS--Q 185
Query: 188 SCEFNSEEGAENRVPEEEEGAAVLPGAVP 216
SC+ E E + + A PG P
Sbjct: 186 SCDSTVPESLERALWAQSSQLAGGPGLAP 214
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 43.5 bits (101), Expect = 6e-04
Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 13/186 (6%)
Query: 14 GVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAGSP 73
GV+ SG SS T +G WA+ ++ G + + + S SAS A +P
Sbjct: 11 GVSTPSGSGWASSSASGASTPSNSG-----WASPSASGASIPSDSGWAS--PSASGASTP 63
Query: 74 EVPGPCSSSAGLDL--KDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAGDAGA 131
G S SA DSG SP+A+ A ASP + A + + G A + +
Sbjct: 64 SNSGWASFSASWASIPSDSGWASPSASWASTPSD-SGWASPSASGASIPSDSGWASPSVS 122
Query: 132 RPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPSSCEF 191
+ A +A+G+ PS +G S S S S +S S++ S +SC
Sbjct: 123 GASIPSAFWASPSASGASTPSDSGWASPSASWASTSSDSGWASPSASWT---SPSASCAS 179
Query: 192 NSEEGA 197
+S GA
Sbjct: 180 SSASGA 185
Score = 36.6 bits (83), Expect = 0.071
Identities = 58/223 (26%), Positives = 88/223 (39%), Gaps = 33/223 (14%)
Query: 10 PLEHGVAAGPA-SGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSAS 68
P + G A+ P+ SG SS A+ P A TS +G + +A + S S
Sbjct: 211 PSDFGWASTPSDSGWASSS--------ASCISPSASGASTSSDSGWASPSASW-VSTSTS 261
Query: 69 PAGSPEVPGPCSSSAGLD--LKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTA 126
A + G SSSA D DSG P+A+ AS + A + G++
Sbjct: 262 RASTSSDSGWASSSASWDSITSDSGWVCPSAS----------WASSSASWASAPSDSGSS 311
Query: 127 GDAGARPD-LAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGE----SPSLDSLESFSN 181
+ +R L+ + A +A+G+ PS +G S S S S + SPS + S+
Sbjct: 312 SPSVSRASTLSVSGWASFSASGASAPSDSGWTSHSASGVSTTSDSGWASPSASGASTSSD 371
Query: 182 LHSFPSSCEFNSEEGAENRVPEEEEGA------AVLPGAVPLC 218
S + S + P + A A +P A LC
Sbjct: 372 SGWASPSASWASPSASGASTPSDSGWASPSASGASMPSAPSLC 414
Score = 30.8 bits (68), Expect = 3.9
Identities = 41/157 (26%), Positives = 58/157 (36%), Gaps = 26/157 (16%)
Query: 44 WAAETSGGNGLGAAAARRSLPDSASPAGSPEVPGPC---------SSSAGLDLKDSGLES 94
WA+ S +A+ S+P + A SP V G S+S DSG S
Sbjct: 91 WASTPSDSGWASPSASGASIPSDSGWA-SPSVSGASIPSAFWASPSASGASTPSDSGWAS 149
Query: 95 PAAAEAPLRGQY-------KVTASPETAVAGVGHELGTAGDAG-ARPDLAGTCQAELTAA 146
P+A+ A T+ + + T D+G A P + + A+
Sbjct: 150 PSASWASTSSDSGWASPSASWTSPSASCASSSASGASTPSDSGWASPSVFWVSPSTSWAS 209
Query: 147 GSEE------PSSAGGLSSS--CSDPSPPGESPSLDS 175
+ PS +G SSS C PS G S S DS
Sbjct: 210 SPSDFGWASTPSDSGWASSSASCISPSASGASTSSDS 246
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 43.1 bits (100), Expect = 8e-04
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 496 RPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDR 555
R + E K Q + +++ L+QE+ + + + + E A++ QE++ +
Sbjct: 1232 REKEEREKALKAQAEHAEKE---KERLRQERMRSREDEDALEQARRAHEEARRRQEQQQQ 1288
Query: 556 -RASQYYQEQEQAAAAAAAASTQAQGQPAQASPSSGRQSGNSERKRKEPRE 605
R Q Q+Q+QAAA AAAA+ QAQ Q+ R+ + + RE
Sbjct: 1289 QRQEQQQQQQQQAAAVAAAATPQAQSSQPQSMLDQQRELARKREQERRRRE 1339
Score = 30.8 bits (68), Expect = 3.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 551 EEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASPSSGRQSGNSERKRKEPREKDKEK 610
+ E+ RA + + QEQ A + A QP Q P ++K K+ +EK KEK
Sbjct: 502 DSEEERAQRLAELQEQLKAVHEQLA--ALSQPQQNKP---------KKKEKDKKEKKKEK 550
Query: 611 EKEK 614
K K
Sbjct: 551 HKRK 554
>gi|93141214 sodium channel, voltage-gated, type II, alpha isoform 2
[Homo sapiens]
Length = 2005
Score = 42.7 bits (99), Expect = 0.001
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 23/114 (20%)
Query: 517 LMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAAST 576
L +++ E+Q+Q + LE A++ + E + Q ++QE+A AAAAAAS
Sbjct: 421 LAVVAMAYEEQNQ-----------ATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASA 469
Query: 577 QAQ--------GQPAQASPSSGRQSGNSERKRKEPREKDKEK----EKEKNSCV 618
+++ G +++S + + S SE++ K R+K K+K E+EKN V
Sbjct: 470 ESRDFSGAGGIGVFSESSSVASKLSSKSEKELKNRRKKKKQKEQSGEEEKNDRV 523
>gi|93141212 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 42.7 bits (99), Expect = 0.001
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 23/114 (20%)
Query: 517 LMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAAST 576
L +++ E+Q+Q + LE A++ + E + Q ++QE+A AAAAAAS
Sbjct: 421 LAVVAMAYEEQNQ-----------ATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASA 469
Query: 577 QAQ--------GQPAQASPSSGRQSGNSERKRKEPREKDKEK----EKEKNSCV 618
+++ G +++S + + S SE++ K R+K K+K E+EKN V
Sbjct: 470 ESRDFSGAGGIGVFSESSSVASKLSSKSEKELKNRRKKKKQKEQSGEEEKNDRV 523
>gi|93141210 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 42.7 bits (99), Expect = 0.001
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 23/114 (20%)
Query: 517 LMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAAST 576
L +++ E+Q+Q + LE A++ + E + Q ++QE+A AAAAAAS
Sbjct: 421 LAVVAMAYEEQNQ-----------ATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASA 469
Query: 577 QAQ--------GQPAQASPSSGRQSGNSERKRKEPREKDKEK----EKEKNSCV 618
+++ G +++S + + S SE++ K R+K K+K E+EKN V
Sbjct: 470 ESRDFSGAGGIGVFSESSSVASKLSSKSEKELKNRRKKKKQKEQSGEEEKNDRV 523
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 42.4 bits (98), Expect = 0.001
Identities = 53/186 (28%), Positives = 69/186 (37%), Gaps = 34/186 (18%)
Query: 73 PEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYK-------VTASPETAVAGVGHE--- 122
P PG S GL S E A LRG + ++SP+ A +G
Sbjct: 568 PHEPGGPGSPGGLGGGPSAWE---ACPPALRGLHHDLLLRKMSSSSPDLLSAALGSRGRG 624
Query: 123 -LGTAGDAGARPDLAG-TCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS 180
G AGD G+ P G T +E +A GS P S GG P PGE L
Sbjct: 625 ATGGAGDPGSPPPARGDTPPSEGSAPGSTSPDSPGGAKGEPPPPVGPGEGVGL------- 677
Query: 181 NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPL--------CKEEEGEETAQVLAA 232
+ E S G + AA+L A +EEEGE ++V
Sbjct: 678 ----LGTGREGTSGRGGSRAGSQHLTPAALLYRAAVTRSQKRGISSEEEEGEVDSEVELT 733
Query: 233 SKERFP 238
S +R+P
Sbjct: 734 SSQRWP 739
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 42.4 bits (98), Expect = 0.001
Identities = 56/236 (23%), Positives = 87/236 (36%), Gaps = 25/236 (10%)
Query: 19 PASGTGSS-----QEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAGSP 73
P G G+S EGL + A D + + GL +P + S
Sbjct: 204 PGEGPGTSVPLAATEGLSTSVQATPDEGPSTSVPPTATEGLSTP-----VPPTRDEGPST 258
Query: 74 EVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAGDAGARP 133
VP + + + + + P RG+ T+ P TA G+ + G+
Sbjct: 259 SVPATPGEGPSTSVLPAASDGQSISLVPTRGKGSSTSVPPTATEGLSTSVQPTAGEGSST 318
Query: 134 DLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPSSCEFNS 193
+ T L+ S P++ LS+S P PGE PS L +S +
Sbjct: 319 SVPPTPGGGLST--SVPPTATEELSTSV--PPTPGEGPSTSVLPIPG--EGLSTSVPPTA 372
Query: 194 EEGAENRVPEEE-EGAAVL--------PGAVPLCKEEEGEETAQVLAASKERFPGQ 240
+G++ VP EGA+ L PG+ L EG T +AS +R P +
Sbjct: 373 SDGSDTSVPPTPGEGASTLVQPTAPDGPGSSVLPNPGEGPSTLFSSSASVDRNPSK 428
Score = 34.3 bits (77), Expect = 0.35
Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 19/172 (11%)
Query: 21 SGTGSSQEGL-QETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAGSPEVPGPC 79
SG + +GL LAA +G TS + S+P +AS S +P
Sbjct: 115 SGPPTISKGLCTSVTLAASEGRNTSRPPTS------SEEPSTSVPPTASEVPSTSLPPTP 168
Query: 80 SSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAGDAGARPDLAGTC 139
+ + E P+ + P + T+ T G G + A G + T
Sbjct: 169 GEGTSTSVPPTAYEGPSTSVVPTPDEGPSTSVLPTPGEGPGTSVPLAATEGLSTSVQAT- 227
Query: 140 QAELTAAGSEEPSSAGGLSS----------SCSDPSPPGESPSLDSLESFSN 181
+ + S P++ GLS+ S S P+ PGE PS L + S+
Sbjct: 228 -PDEGPSTSVPPTATEGLSTPVPPTRDEGPSTSVPATPGEGPSTSVLPAASD 278
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 42.0 bits (97), Expect = 0.002
Identities = 65/259 (25%), Positives = 92/259 (35%), Gaps = 44/259 (16%)
Query: 3 SSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRS 62
+SP + + E AA P +G ++ AA G + T+ +AA+ S
Sbjct: 80 ASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPG-----SPTAAEGEAASAASSTS 134
Query: 63 LP---DSASPAGSPEVPGPCSSS---------AGLDLKDSGLESPAAAEAPLRGQYKVTA 110
P D A+P+ S E P +G K + E+ EA
Sbjct: 135 SPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGGEAE--------- 185
Query: 111 SPETAVAGVGHELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSP---- 166
A A G + AG A A AG E AA EE ++AG ++ DP
Sbjct: 186 ----APAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEE-AAAGEEGAAGGDPQEAKPQ 240
Query: 167 -----PGESPSLDSLESFSNLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEE 221
P + P+ D ++ PS E E A E +A PGA P +
Sbjct: 241 EAAVAPEKPPASDETKAAEE----PSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAA 296
Query: 222 EGEETAQVLAASKERFPGQ 240
EE A A+S P Q
Sbjct: 297 PAEEPAAAAASSACAAPSQ 315
Score = 40.4 bits (93), Expect = 0.005
Identities = 58/214 (27%), Positives = 82/214 (38%), Gaps = 38/214 (17%)
Query: 55 GAAAARRSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTAS--- 111
G AAA R P A+ A SP + +K +G SPAAAE+ + + + S
Sbjct: 12 GEAAAER--PGEAAVASSPS---KANGQENGHVKVNGDASPAAAESGAKEELQANGSAPA 66
Query: 112 ---PETAVAGVGHELGTAGDAG-----ARPDLAGT-----CQAELTAAGSEEPSSAGG-- 156
E A AG G +A + G A P+ + AE AA P++A G
Sbjct: 67 ADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAAEGEA 126
Query: 157 LSSSCSDPSPPGE-----SPSLDSLESFSNLHSFPSSCEFN----------SEEGAENRV 201
S++ S SP E SPS ++ + SF S + + + EG E
Sbjct: 127 ASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGEGGEAEA 186
Query: 202 PEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKE 235
P E G G E G + + AA E
Sbjct: 187 PAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGE 220
Score = 38.9 bits (89), Expect = 0.014
Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 19/159 (11%)
Query: 31 QETRLAAGDGPGVWAAETSGGN----GLGAAAARRSLPDSASPAGSP--EVPGPCSSSAG 84
++ + AG+G A GG G AAAA + S A +P E +AG
Sbjct: 172 KKNKKEAGEGGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAG 231
Query: 85 LDLKDSGLESPAAA--EAPLRGQYKVTASPETAVAGVGHELGTAGDAGARPDLAGT-CQA 141
D +++ + A A + P + K P E G + A P AG
Sbjct: 232 GDPQEAKPQEAAVAPEKPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPP 291
Query: 142 ELTAAGSEEPSSAGGLSS----------SCSDPSPPGES 170
E AA +EEP++A S+ CS +PP E+
Sbjct: 292 EQEAAPAEEPAAAAASSACAAPSQEAQPECSPEAPPAEA 330
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 40.8 bits (94), Expect = 0.004
Identities = 47/163 (28%), Positives = 57/163 (34%), Gaps = 18/163 (11%)
Query: 19 PASGTGSSQEGLQETRLAAGDGPGVWAAETSGGN----GLGAAAARRSLPDSASPAGSPE 74
P+ G GS G AA P A SG G A A PDS + A P+
Sbjct: 374 PSPGYGSPAAGAASADTAARAAPAAPADPDSGATPEDPDSGTAPAD---PDSGAFAADPD 430
Query: 75 ------VPGPCSSSAGLDLK---DSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGT 125
P S A D DSG A A+ + A+P A H
Sbjct: 431 SGAAPAAPADPDSGAAPDAPADPDSGAAPDAPADPDAGAAPEAPAAPAAAETRAAHVAPA 490
Query: 126 AGDAGA--RPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSP 166
A DAGA P + T A++ A S P+S PSP
Sbjct: 491 APDAGAPTAPAASATRAAQVRRAASAAPASGARRKIHLRPPSP 533
Score = 31.6 bits (70), Expect = 2.3
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 53 GLGAAAARRSLPDSASPAGSPEVPGPCSSSAGLDLKDSGL-----ESPAAAEAPLRGQYK 107
G G+ AA + D+A+ A +P P S A + DSG +S A A P G
Sbjct: 377 GYGSPAAGAASADTAARA-APAAPADPDSGATPEDPDSGTAPADPDSGAFAADPDSGA-- 433
Query: 108 VTASPETAVAGVGHELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPP 167
A+P +G + D+GA PD A P++A ++ + +P
Sbjct: 434 APAAPADPDSGAAPDAPADPDSGAAPDAPADPDAGAAPEAPAAPAAAETRAAHVAPAAPD 493
Query: 168 GESPS 172
+P+
Sbjct: 494 AGAPT 498
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 40.8 bits (94), Expect = 0.004
Identities = 44/162 (27%), Positives = 55/162 (33%), Gaps = 17/162 (10%)
Query: 18 GPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAGSPEVPG 77
GP+ G E R G V G +GL LP G P PG
Sbjct: 2201 GPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPG 2260
Query: 78 PCSSSAGLDLKDSGLESPAAAEAP-------LRGQYKVTASPETAVAGVGHELGTAGDAG 130
+S KD SP +P +G+ T +P AV G+ G G+ G
Sbjct: 2261 RDGASG----KDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLP---GAKGEKG 2313
Query: 131 ARPDLAGTCQAELTAAGSE---EPSSAGGLSSSCSDPSPPGE 169
A LAG E A G P G + +P PGE
Sbjct: 2314 APGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGE 2355
Score = 32.7 bits (73), Expect = 1.0
Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 10/136 (7%)
Query: 47 ETSGGNGLGAAAARRSLPDSASPAGSPEVPGPCSSSAGLDLK----DSGLESP---AAAE 99
+ S G+ L RR + G P GP LK D G + P A E
Sbjct: 1964 DESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGE 2023
Query: 100 APLRGQYKVTASP-ETAVAGVGHELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLS 158
G + P + + G+ G G+AG RP G + E G + GL
Sbjct: 2024 RGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAG-RPGERGE-RGEKGERGEQGRDGPPGLP 2081
Query: 159 SSCSDPSPPGESPSLD 174
+ P PPG S+D
Sbjct: 2082 GTPGPPGPPGPKVSVD 2097
>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 468
Score = 40.4 bits (93), Expect = 0.005
Identities = 50/182 (27%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 3 SSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRS 62
SS + L G + AS SS G G V AAET G G AA RR+
Sbjct: 292 SSRKRYSSLLRGASREAASSNASSSPGTPFL------GKVVPAAETPGSPGAHPAAGRRA 345
Query: 63 LPDSA-SPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGH 121
+ SA +P + PG C +SA A PL Q P V
Sbjct: 346 VQTSAPAPGATGRAPG-CLASA------------PAMRRPLGAQAGEVELPRLLVPTPPR 392
Query: 122 ELGTAGDA------GARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDS 175
G G + G R A C L P G + P PPG P ++
Sbjct: 393 RPGDPGPSPNADSPGKRVGQAHLCPVALLERAQAVPPRKGPAGCHPAGPGPPGMCPCAEA 452
Query: 176 LE 177
E
Sbjct: 453 TE 454
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 40.4 bits (93), Expect = 0.005
Identities = 62/210 (29%), Positives = 80/210 (38%), Gaps = 38/210 (18%)
Query: 11 LEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAET----SGGNGLGAAAARRS--LP 64
LE G GP G+ G GPG A + +GG L AA A RS +P
Sbjct: 7 LEGGAGDGPLPPGGAGP--------GPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVP 58
Query: 65 DSASPAGSPEV-PGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGV-GH- 121
P P PGP S+S LD K+ PL Q + +P+ A A GH
Sbjct: 59 PVPGPGPGPGPGPGPGSTSRRLDPKE-----------PLGNQRAASPTPKQASATTPGHE 107
Query: 122 ---ELGTAGDAGARPD-LAGTCQAE-LTAAGSEEPSSAGGLSSSCSDP-----SPPGESP 171
E G AG D T Q + T PS + S+ + P P S
Sbjct: 108 SPRETRAQGPAGQEADGPRRTLQVDSRTQRSGRSPSVSPDRGSTPTSPYSVPQIAPLPSS 167
Query: 172 SLDSLESFSNLHSFPSSCEFNSEEGAENRV 201
+L + S+L S PS FN+ N+V
Sbjct: 168 TLCPICKTSDLTSTPSQPNFNTCTQCHNKV 197
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 40.0 bits (92), Expect = 0.006
Identities = 56/208 (26%), Positives = 67/208 (32%), Gaps = 14/208 (6%)
Query: 17 AGPASGTG-SSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAGSPEV 75
AGP G+G + G Q + G G AA G GL P P+GSP
Sbjct: 842 AGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGK 901
Query: 76 PGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASP-ETAVAGVGHELGTAGDAGAR-- 132
GP + S S +A GQ SP G LG AG GAR
Sbjct: 902 DGPPGPAGNTGAPGSPGVSGPKGDA---GQPGEKGSPGAQGPPGAPGPLGIAGITGARGL 958
Query: 133 ---PDLAGT--CQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPS 187
P + G G A GLS P P G P L P
Sbjct: 959 AGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQG-LPGLAGTAGEPGRDGNPG 1017
Query: 188 SCEFNSEEGAE-NRVPEEEEGAAVLPGA 214
S +G+ + E G+ PGA
Sbjct: 1018 SDGLPGRDGSPGGKGDRGENGSPGAPGA 1045
Score = 35.0 bits (79), Expect = 0.21
Identities = 45/164 (27%), Positives = 59/164 (35%), Gaps = 15/164 (9%)
Query: 9 QPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSAS 68
+P ++G P + G+ A G+ + G NGL AA R P
Sbjct: 433 EPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRG 492
Query: 69 PAGSPEVPGPCSSSAGLDLKDSGLESPA----AAEAPLRGQYKVTASPETAVAGVGHELG 124
PAG +PG AG + G PA AA P G+ V P + G+ G
Sbjct: 493 PAGPNGIPGE-KGPAG----ERGAPGPAGPRGAAGEP--GRDGVPGGP--GMRGMPGSPG 543
Query: 125 TAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPG 168
G G +P G+ Q E G PS G P P G
Sbjct: 544 GPGSDG-KPGPPGS-QGESGRPGPPGPSGPRGQPGVMGFPGPKG 585
Score = 31.2 bits (69), Expect = 3.0
Identities = 51/184 (27%), Positives = 68/184 (36%), Gaps = 33/184 (17%)
Query: 50 GGNGLGAAAARRSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVT 109
G GL AA R + G P PGP +AG SP A +G+
Sbjct: 309 GRPGLPGAAGARGNDGARGSDGQPGPPGP-PGTAGFP------GSPGA-----KGEVGPA 356
Query: 110 ASP-ETAVAGVGHELGTAGDAGAR-----PDLAGT--CQAELTAAGSEEPSSAGGLSSSC 161
SP G E G G AGA+ P + G+ + E+ AG A GL +
Sbjct: 357 GSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI---PGAPGLMGAR 413
Query: 162 SDPSPPGESPSLDSLESFSNLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEE 221
P P G + + L N +G P E G A +PG VP K E
Sbjct: 414 GPPGPAGANGA-------PGLRGGAGEPGKNGAKGEPG--PRGERGEAGIPG-VPGAKGE 463
Query: 222 EGEE 225
+G++
Sbjct: 464 DGKD 467
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 39.3 bits (90), Expect = 0.011
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 8/161 (4%)
Query: 20 ASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAGSPEVPGPC 79
A G +EG ++ A + P +T G A A P+ A P G
Sbjct: 62 AEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGA--AEAKAEPPKAPEQEQAAPGPAAGGEA 119
Query: 80 SSSAGLDLKDSGLESPAAAEAPLR--GQYKVTASPETAVAGVGHELGTAGDAGARPDLAG 137
+A + +PAA E P + G+ K T +P A G
Sbjct: 120 PKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEA 179
Query: 138 TCQAELTAAGSEEPSS---AGGLSSSCSDPSPPGESPSLDS 175
++ T A +E PSS A G ++S +P P E+P+ +S
Sbjct: 180 APSSKETPAATEAPSSTPKAQGPAASAEEPKPV-EAPAANS 219
Score = 30.0 bits (66), Expect = 6.6
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 2 ESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARR 61
E S E +P + A PA+ QE + A+ PG A S A A
Sbjct: 140 EPSKEEGEPKKTEAPAAPAA-----QETKSDGAPASDSKPGSSEAAPSSKETPAATEAPS 194
Query: 62 SLPDSASPAGSPEVPGPCSSSA 83
S P + PA S E P P + A
Sbjct: 195 STPKAQGPAASAEEPKPVEAPA 216
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 39.3 bits (90), Expect = 0.011
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 91 GLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAGDAGARPDLAGTCQAELTAAGSEE 150
G E P A AP R + + A P A G G G G G + G E ++
Sbjct: 53 GGEQPPPAPAPRRERRDLPAEPAAARGGGGGGGGGGGGRGPQARARGGGPGE---PRGQQ 109
Query: 151 PSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPSSCEFNSEEGAENRVPEEEE 206
P+S G L + DP P SP L +LE+ S + ++ EN VP++ E
Sbjct: 110 PASRGALPARALDPHP---SP-LITLETQDGYFSHRPKEKVRTDSNNENSVPKDFE 161
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 38.9 bits (89), Expect = 0.014
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 3 SSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRS 62
SS S +HG +G +SG G Q G + + + G+ G +A +S G + +R+S
Sbjct: 471 SSEHSSGYTQHGSGSGHSSGHG--QHGSRSGQSSRGERQGS-SAGSSSSYGQHGSGSRQS 527
Query: 63 LPDSASPAGSPEVPGPCSSSAGLDLKDSGLESP---AAAEAPLRGQYKVTASPETAVAGV 119
L S +GS + P P + S P + + RG Y+ S +G+
Sbjct: 528 LGHSRHGSGSGQSPSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYE---SGSGHSSGL 584
Query: 120 GHELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSC 161
GH+ +G + G+ + G + S G SSSC
Sbjct: 585 GHQESRSGQSSGYGQ-HGSSSGHSSTHG--QHGSTSGQSSSC 623
Score = 33.1 bits (74), Expect = 0.78
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 3 SSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRS 62
SS +S +HG +G +S Q G + + + G+ G ++ +S G + +R+S
Sbjct: 1407 SSWQSSGCTQHGSGSGHSSSY--EQHGSRSGQSSRGERHGS-SSGSSSSYGQHGSGSRQS 1463
Query: 63 LPDSASPAGSPEVPGPCSSSAGLDLKDSGLESP---AAAEAPLRGQYKVTASPETAVAGV 119
L +GS + P P G S SP + + RG Y+ S + +G+
Sbjct: 1464 LGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYE---SGSSHSSGL 1520
Query: 120 GHELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSC 161
GH +G + G+ + G + S G SSSC
Sbjct: 1521 GHRESRSGQSSGYGQ-HGSSSGHSSTHG--QHGSTSGQSSSC 1559
Score = 32.0 bits (71), Expect = 1.7
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 12/162 (7%)
Query: 3 SSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRS 62
SS +S +HG +G +S Q G + + + G+ G ++ +S G + +R+S
Sbjct: 2347 SSWQSSGYTQHGSGSGHSSSY--EQHGSRSGQSSRGERHGS-SSGSSSSYGQHGSGSRQS 2403
Query: 63 LPDSASPAGSPEVPGPCSSSAGLDLKDSGLESP---AAAEAPLRGQYKVTASPETAVAGV 119
L +GS + P P G S SP + + RG Y+ S +G+
Sbjct: 2404 LGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYE---SGSGHSSGL 2460
Query: 120 GHELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSC 161
GH +G + G+ + G + S G SSSC
Sbjct: 2461 GHRESRSGQSSGYGQ-HGSSSGHSSTHG--QHGSTSGQSSSC 2499
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 38.9 bits (89), Expect = 0.014
Identities = 60/262 (22%), Positives = 98/262 (37%), Gaps = 42/262 (16%)
Query: 22 GTGSSQEGLQETRLAAGDGPGVWAAETSG----GNGLGAAAARRSLPDSASPAGSPEVPG 77
G+ + G + + D P + AA T G+G A +L A+P+ G
Sbjct: 668 GSSFTASGHSPSEIVPQDAPTISAATTFAPAPTGDGHTTQAPTTAL--QAAPSSHDATLG 725
Query: 78 PC-----SSSAGLDLKDSGLESPAAAEAPLRGQY---KVTASPETAVAGVGHELGTAGDA 129
P S + L L +S + +P E GQ+ + SP+TA A + +A
Sbjct: 726 PSGGTSLSKTGALTLANSVVSTPGGPE----GQWTSASASTSPDTAAAMTHTHQAESTEA 781
Query: 130 ------------GARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLE 177
G+R AGT + A PS + G+S+S + + +PS DS
Sbjct: 782 SGQTQTSEPASSGSRTTSAGTATPSSSGASGTTPSGSEGISTS-GETTRFSSNPSRDS-- 838
Query: 178 SFSNLHSFPSSCEFNSEEGAENRVP-EEEEGAAVLPGAV-PLCKEEE--GEETAQVLAAS 233
H+ S+ E S + +P ++++PG P E G T Q S
Sbjct: 839 -----HTTQSTTELLSASASHGAIPVSTGMASSIVPGTFHPTLSEASTAGRPTGQSSPTS 893
Query: 234 KERFPGQSVYHIKWIQWKEENT 255
P ++ + Q + T
Sbjct: 894 PSASPQETAAISRMAQTQRTRT 915
Score = 34.3 bits (77), Expect = 0.35
Identities = 46/188 (24%), Positives = 64/188 (34%), Gaps = 32/188 (17%)
Query: 10 PLEHGVAAGPASGTGSSQEG---LQETRLAAGDGP-GVW-AAETSGGNGLGAAAARRSLP 64
P H GP+ GT S+ G L + ++ GP G W +A S AA
Sbjct: 717 PSSHDATLGPSGGTSLSKTGALTLANSVVSTPGGPEGQWTSASASTSPDTAAAMTHTHQA 776
Query: 65 DSASPAGSPEVPGPCSS-----SAGLDLKDSGLES---PAAAEA-------------PLR 103
+S +G + P SS SAG S S P+ +E P R
Sbjct: 777 ESTEASGQTQTSEPASSGSRTTSAGTATPSSSGASGTTPSGSEGISTSGETTRFSSNPSR 836
Query: 104 GQYKVTASPETAVAGVGHELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSD 163
+ ++ E A H A + GT L+ A S G + S
Sbjct: 837 DSHTTQSTTELLSASASHGAIPVSTGMASSIVPGTFHPTLSEA------STAGRPTGQSS 890
Query: 164 PSPPGESP 171
P+ P SP
Sbjct: 891 PTSPSASP 898
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 38.5 bits (88), Expect = 0.019
Identities = 61/239 (25%), Positives = 88/239 (36%), Gaps = 31/239 (12%)
Query: 2 ESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAA-----------ETSG 50
ES+P L P P S T S T + P + E+S
Sbjct: 2968 ESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESST 3027
Query: 51 GNGLGAAAARRSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVT- 109
+ + + PDS + +G + P SS G SP + A GQ T
Sbjct: 3028 SHSQPGSTHTTAFPDSTTTSGLSQEPTASHSSQG---STEATLSPGSTTASSLGQQSTTF 3084
Query: 110 -ASP-ETAVAGVGHELGTAGDAGAR-PDLAGT-------CQAELTAAGSEEPSSA--GGL 157
+SP +T + + T+G A P + T A T+AG +E S+
Sbjct: 3085 HSSPGDTETTLLPDDTITSGLVEASTPTHSSTGSLHTTLTPASSTSAGLQEESTTFQSWP 3144
Query: 158 SSSCSDPSPPGESPSLDSLESFSNLHSFPSSCEFNSEEGAENRVPEEEEGAAV--LPGA 214
SSS + PSPPG + + +E + HS PSS + + EE V PGA
Sbjct: 3145 SSSDTTPSPPGTTAA--PVEVSTTYHSRPSSTPTTHFSASSTTLGRSEESTTVHSSPGA 3201
Score = 35.8 bits (81), Expect = 0.12
Identities = 60/239 (25%), Positives = 87/239 (36%), Gaps = 31/239 (12%)
Query: 2 ESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAA-----------ETSG 50
ES+P L P P S T S T + P + E+S
Sbjct: 1411 ESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESST 1470
Query: 51 GNGLGAAAARRSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVT- 109
+ + + PDS + + + P SS G SP + A GQ T
Sbjct: 1471 SHSQPGSTHTTAFPDSTTTSDLSQEPTTSHSSQG---STEATLSPGSTTASSLGQQSTTF 1527
Query: 110 -ASP-ETAVAGVGHELGTAGDAGAR-PDLAGT-------CQAELTAAGSEEPSSA--GGL 157
+SP +T + + T+G A P + T A T+AG +E S+
Sbjct: 1528 HSSPGDTETTLLPDDTITSGLVEASTPTHSSTGSLHTTLTPASSTSAGLQEESTTFQSWP 1587
Query: 158 SSSCSDPSPPGESPSLDSLESFSNLHSFPSSCEFNSEEGAENRVPEEEEGAAV--LPGA 214
SSS + PSPPG + + +E + HS PSS + + EE V PGA
Sbjct: 1588 SSSDTTPSPPGTTAA--PVEVSTTYHSRPSSTPTTHFSASSTTLGRSEESTTVHSSPGA 1644
Score = 35.4 bits (80), Expect = 0.16
Identities = 57/237 (24%), Positives = 83/237 (35%), Gaps = 27/237 (11%)
Query: 2 ESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAA-----------ETSG 50
ES+P L P P S T S T + P + E+S
Sbjct: 4051 ESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESST 4110
Query: 51 GNGLGAAAARRSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVT- 109
+ + + PDS + +G + P SS G SP + A GQ T
Sbjct: 4111 SHSQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQG---STEATLSPGSTTASSLGQQSTTF 4167
Query: 110 -ASP-ETAVAGVGHELGTAGDAGAR-PDLAGT-------CQAELTAAGSEEPSSAGGLSS 159
+SP +T + + T+G A P + T A T+ G +E S+
Sbjct: 4168 HSSPGDTETTLLPDDTITSGLVEASTPTHSSTGSLHTTLTPASSTSTGLQEESTTFQSWP 4227
Query: 160 SCSDPSPPGESPSLDSLESFSNLHSFPSSCEFNSEEGAENRVPEEEEGAAV--LPGA 214
S SD +P S + +E + HS PSS + + EE V PGA
Sbjct: 4228 SSSDTTPSPPSTTAVPVEVSTTYHSRPSSTPTTHFSASSTTLGRSEESTTVHSSPGA 4284
Score = 33.1 bits (74), Expect = 0.78
Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 13/180 (7%)
Query: 20 ASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAG-------- 71
++ + SSQ+ L A V E++ + +LP S + G
Sbjct: 3550 STASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGLSEKSTTF 3609
Query: 72 --SPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPE-TAVAGVGHELGTAGD 128
SP P S A ES + P G TA P+ T G+ T+
Sbjct: 3610 HSSPRSPATTLSPASTTSSGVSEESTTSHSRP--GSTHTTAFPDSTTTPGLSRHSTTSHS 3667
Query: 129 AGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPSS 188
+ D + T+ S+E +++ S S PG + +L + + HS P S
Sbjct: 3668 SPGSTDTTLLPASTTTSGSSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSSPGS 3727
Score = 32.3 bits (72), Expect = 1.3
Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 13/180 (7%)
Query: 20 ASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAG-------- 71
++ + SSQ+ L A V E++ + +LP S + G
Sbjct: 910 STASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGLSERSTTF 969
Query: 72 --SPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPE-TAVAGVGHELGTAGD 128
SP P S A ES + P G TA P+ T G+ T+
Sbjct: 970 HSSPRSPATTLSPASTTSSGVSEESTTSRSRP--GSTHTTAFPDSTTTPGLSRHSTTSHS 1027
Query: 129 AGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPSS 188
+ D + T+ S+E +++ S S PG + +L + + HS P S
Sbjct: 1028 SPGSTDTTLLPASTTTSGPSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSNPGS 1087
Score = 30.4 bits (67), Expect = 5.1
Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 13/180 (7%)
Query: 20 ASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAG-------- 71
++ + SSQ+ L A V E++ + +LP S + G
Sbjct: 1993 STASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGLSEKSTTF 2052
Query: 72 --SPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPE-TAVAGVGHELGTAGD 128
SP P S A ES + P G TA P+ T G+ T+
Sbjct: 2053 HSSPRSPATTLSPASTTSSGVSEESTTSHSRP--GSTHTTAFPDSTTTPGLSRHSTTSHS 2110
Query: 129 AGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPSS 188
+ D + T+ S+E +++ S PG + +L + + HS P S
Sbjct: 2111 SPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGS 2170
Score = 30.4 bits (67), Expect = 5.1
Identities = 45/196 (22%), Positives = 66/196 (33%), Gaps = 32/196 (16%)
Query: 25 SSQEGLQETRLAAGDGP-GVWAAETSGGNGLGAAAAR--------RSLPDSASPA----- 70
S+Q GL T A G +SG G + AR S P SP+
Sbjct: 2449 STQTGLPATLTTADLGEESTTFPSSSGSTGTTLSPARSTTSGLVGESTPSRLSPSSTETT 2508
Query: 71 ---GSPEVPG-----------PCSSSAGLD---LKDSGLESPAAAEAPLRGQYKVTASPE 113
GSP P P S A L SG+ ++ G TA P+
Sbjct: 2509 TLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESSTSHSQPGSTHTTAFPD 2568
Query: 114 -TAVAGVGHELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPS 172
T G+ T+ + D + T+ S+E +++ S PG + +
Sbjct: 2569 STTTPGLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTALSPGSTTA 2628
Query: 173 LDSLESFSNLHSFPSS 188
L + + HS P S
Sbjct: 2629 LSFGQESTTFHSSPGS 2644
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.1 bits (87), Expect = 0.024
Identities = 49/182 (26%), Positives = 62/182 (34%), Gaps = 17/182 (9%)
Query: 2 ESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARR 61
E P L P G GP S +G+ + AG+ A G G
Sbjct: 474 EPGPTGL-PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEA 532
Query: 62 SLPDSASPAGSPEVPGPCSSS-----AGLDLKDSGLESPAAAEAPLRGQYKVTASPETAV 116
LP + GSP PGP + AG D + P A RGQ V P
Sbjct: 533 GLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGA-----RGQAGVMGFP--GP 585
Query: 117 AGVGHELGTAGDAG--ARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLD 174
G E G AG+ G P G + AG++ P G + + P G SP
Sbjct: 586 KGAAGEPGKAGERGVPGPPGAVGPAGKD-GEAGAQGPPGPAGPAGERGEQGPAG-SPGFQ 643
Query: 175 SL 176
L
Sbjct: 644 GL 645
Score = 37.4 bits (85), Expect = 0.041
Identities = 39/163 (23%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 17 AGPASGTGSSQE----GLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAGS 72
AGP GS E G R G+ A +G G A P PAG
Sbjct: 283 AGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP 342
Query: 73 PEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAGDAGAR 132
P PG + ++G + P +E P + + AG G G GA+
Sbjct: 343 PGFPGAVGAKG-----EAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 397
Query: 133 -----PDLAGT--CQAELTAAGSEEPSSAGGLSSSCSDPSPPG 168
P +AG +G + P G + +P PG
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG 440
Score = 34.3 bits (77), Expect = 0.35
Identities = 40/159 (25%), Positives = 53/159 (33%), Gaps = 31/159 (19%)
Query: 10 PLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASP 69
P E GV P G A GD A + G GL + +P
Sbjct: 682 PGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGL------QGMPGERGA 735
Query: 70 AGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAGDA 129
AG +PGP D G P A+ + + V G+ +G G A
Sbjct: 736 AG---LPGPKG--------DRGDAGPKGADG---------SPGKDGVRGLTGPIGPPGPA 775
Query: 130 GARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPG 168
GA D + E +G P+ A G +P PPG
Sbjct: 776 GAPGD-----KGESGPSGPAGPTGARGAPGDRGEPGPPG 809
Score = 31.6 bits (70), Expect = 2.3
Identities = 47/173 (27%), Positives = 55/173 (31%), Gaps = 33/173 (19%)
Query: 17 AGPASGTGS-SQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAARRSLPDSASPAGSPEV 75
AGPA G G + A G +A G G AA R P + AG P
Sbjct: 844 AGPAGPPGPIGNVGAPGAKGARG------SAGPPGATGFPGAAGRVGPPGPSGNAGPPGP 897
Query: 76 PGPCSSSAGLDLKDSGLESPA--------------AAEAPLRGQYKVTASPET----AVA 117
PGP G + G PA A E G +P T +A
Sbjct: 898 PGPAGKEGGKGPR--GETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIA 955
Query: 118 GVGHELGTAGDAGAR--PDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPG 168
G +G G G R P L G G + PS A G PPG
Sbjct: 956 GQRGVVGLPGQRGERGFPGLPGPS----GEPGKQGPSGASGERGPPGPMGPPG 1004
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 38.1 bits (87), Expect = 0.024
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 508 QQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQA 567
QQ Q Q QQ+QQ I+ +Q + S + ++ Q+++ ++ Q Q+Q+Q
Sbjct: 601 QQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQ 660
Query: 568 AAAAAAASTQAQGQPAQ 584
+S AQ P+Q
Sbjct: 661 QQQQQPSSQPAQSLPSQ 677
Score = 36.2 bits (82), Expect = 0.092
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 501 PETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQY 560
P ++ QQ Q Q QQ+QQ Q+ +Q + A++ Q+++ ++Q
Sbjct: 581 PSLLHYTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQ 640
Query: 561 YQEQEQAAAAAAAASTQAQGQPAQASPSSGRQSGNSERKRKEP 603
Q+Q+Q Q Q Q Q S QS S+ + P
Sbjct: 641 QQQQQQQQQQQQQQQQQQQQQQQQQPSSQPAQSLPSQPLLRSP 683
Score = 34.3 bits (77), Expect = 0.35
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 523 QQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQP 582
QQ+QQ Q+ +Q + + ++ Q+++ S Q+Q+Q++ +A Q Q Q
Sbjct: 590 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQQQQQQQQ 649
Query: 583 AQASPSSGRQSGNSERKRKEPRE 605
Q +Q ++ +P +
Sbjct: 650 QQQQQQQQQQQQQQQQPSSQPAQ 672
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,545,691
Number of Sequences: 37866
Number of extensions: 1472132
Number of successful extensions: 12821
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 580
Number of HSP's that attempted gapping in prelim test: 10005
Number of HSP's gapped (non-prelim): 2861
length of query: 620
length of database: 18,247,518
effective HSP length: 108
effective length of query: 512
effective length of database: 14,157,990
effective search space: 7248890880
effective search space used: 7248890880
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.