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Search of human proteins with 94681057
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94681057 tyrosyl-tRNA synthetase 2, mitochondrial [Homo
sapiens]
(477 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94681057 tyrosyl-tRNA synthetase 2, mitochondrial [Homo sapiens] 958 0.0
gi|46391104 hypothetical protein LOC83541 [Homo sapiens] 32 1.3
gi|108389127 hypothetical protein LOC83541 [Homo sapiens] 32 1.3
gi|13937401 hypothetical protein LOC83541 [Homo sapiens] 32 1.3
gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens] 31 2.8
gi|236462242 potassium voltage-gated channel, KQT-like subfamily... 29 8.2
gi|236462079 potassium voltage-gated channel, KQT-like subfamily... 29 8.2
gi|236461942 potassium voltage-gated channel, KQT-like subfamily... 29 8.2
gi|236461719 potassium voltage-gated channel, KQT-like subfamily... 29 8.2
gi|28373065 potassium voltage-gated channel, KQT-like subfamily,... 29 8.2
gi|155969701 espin-like [Homo sapiens] 29 8.2
>gi|94681057 tyrosyl-tRNA synthetase 2, mitochondrial [Homo sapiens]
Length = 477
Score = 958 bits (2476), Expect = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%)
Query: 1 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE 60
MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE
Sbjct: 1 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE 60
Query: 61 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG 120
LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG
Sbjct: 61 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG 120
Query: 121 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ 180
DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ
Sbjct: 121 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ 180
Query: 181 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV 240
HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV
Sbjct: 181 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV 240
Query: 241 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF 300
QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF
Sbjct: 241 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF 300
Query: 301 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR 360
ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR
Sbjct: 301 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR 360
Query: 361 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP 420
EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP
Sbjct: 361 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP 420
Query: 421 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL 477
DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL
Sbjct: 421 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL 477
>gi|46391104 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 1.3
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 57 TKIELPELFDRGTASFPQTI-YCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGA 115
+K +L E F R A + +CG DP LG+ HL RA ++++L G +
Sbjct: 187 SKSDLSERFSRAAADLERFFNFCGLDPEE--------ARGLGVAHLARASSDIVSLAGPS 238
Query: 116 TARLGDPSGRTKEREALETERVR 138
G ++ ER R
Sbjct: 239 AGPGSSEGGCSRRSSVTVEERAR 261
>gi|108389127 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 1.3
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 57 TKIELPELFDRGTASFPQTI-YCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGA 115
+K +L E F R A + +CG DP LG+ HL RA ++++L G +
Sbjct: 187 SKSDLSERFSRAAADLERFFNFCGLDPEE--------ARGLGVAHLARASSDIVSLAGPS 238
Query: 116 TARLGDPSGRTKEREALETERVR 138
G ++ ER R
Sbjct: 239 AGPGSSEGGCSRRSSVTVEERAR 261
>gi|13937401 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 1.3
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 57 TKIELPELFDRGTASFPQTI-YCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGA 115
+K +L E F R A + +CG DP LG+ HL RA ++++L G +
Sbjct: 187 SKSDLSERFSRAAADLERFFNFCGLDPEE--------ARGLGVAHLARASSDIVSLAGPS 238
Query: 116 TARLGDPSGRTKEREALETERVR 138
G ++ ER R
Sbjct: 239 AGPGSSEGGCSRRSSVTVEERAR 261
>gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens]
Length = 183
Score = 30.8 bits (68), Expect = 2.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 289 AVWLNRDKTSPFELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKR 348
A + NRD + +++F+R DD +E KL L HI +++PE +G +
Sbjct: 39 AFYFNRDDVALENFFRYFLRLSDDKMEHAQKLMRLQNL-RGGHICLHDIRKPECQGWESG 97
Query: 349 LAA 351
L A
Sbjct: 98 LVA 100
>gi|236462242 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 5 [Homo sapiens]
Length = 822
Score = 29.3 bits (64), Expect = 8.2
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 250 NIMSGYEFI---NKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWL-----NRDKTSPFE 301
NI G +FI N+ + + + ++ + + T + +S G+AV N+ T+P
Sbjct: 573 NISRGLQFILTPNEFSAQTFYALSPTMHSQATQVPISQSDGSAVAATNTIANQINTAPKP 632
Query: 302 LYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGRE 361
++ P PLP I H+ + P G Q+ ++ T LV +E
Sbjct: 633 AAPTTLQIPP-------------PLPAIKHLPRPETLHPNPAGLQESISDVTTCLVASKE 679
Query: 362 GLDSAK 367
+ A+
Sbjct: 680 NVQVAQ 685
>gi|236462079 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 4 [Homo sapiens]
Length = 951
Score = 29.3 bits (64), Expect = 8.2
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 250 NIMSGYEFI---NKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWL-----NRDKTSPFE 301
NI G +FI N+ + + + ++ + + T + +S G+AV N+ T+P
Sbjct: 702 NISRGLQFILTPNEFSAQTFYALSPTMHSQATQVPISQSDGSAVAATNTIANQINTAPKP 761
Query: 302 LYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGRE 361
++ P PLP I H+ + P G Q+ ++ T LV +E
Sbjct: 762 AAPTTLQIPP-------------PLPAIKHLPRPETLHPNPAGLQESISDVTTCLVASKE 808
Query: 362 GLDSAK 367
+ A+
Sbjct: 809 NVQVAQ 814
>gi|236461942 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 3 [Homo sapiens]
Length = 942
Score = 29.3 bits (64), Expect = 8.2
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 250 NIMSGYEFI---NKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWL-----NRDKTSPFE 301
NI G +FI N+ + + + ++ + + T + +S G+AV N+ T+P
Sbjct: 693 NISRGLQFILTPNEFSAQTFYALSPTMHSQATQVPISQSDGSAVAATNTIANQINTAPKP 752
Query: 302 LYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGRE 361
++ P PLP I H+ + P G Q+ ++ T LV +E
Sbjct: 753 AAPTTLQIPP-------------PLPAIKHLPRPETLHPNPAGLQESISDVTTCLVASKE 799
Query: 362 GLDSAK 367
+ A+
Sbjct: 800 NVQVAQ 805
>gi|236461719 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 2 [Homo sapiens]
Length = 923
Score = 29.3 bits (64), Expect = 8.2
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 250 NIMSGYEFI---NKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWL-----NRDKTSPFE 301
NI G +FI N+ + + + ++ + + T + +S G+AV N+ T+P
Sbjct: 674 NISRGLQFILTPNEFSAQTFYALSPTMHSQATQVPISQSDGSAVAATNTIANQINTAPKP 733
Query: 302 LYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGRE 361
++ P PLP I H+ + P G Q+ ++ T LV +E
Sbjct: 734 AAPTTLQIPP-------------PLPAIKHLPRPETLHPNPAGLQESISDVTTCLVASKE 780
Query: 362 GLDSAK 367
+ A+
Sbjct: 781 NVQVAQ 786
>gi|28373065 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 1 [Homo sapiens]
Length = 932
Score = 29.3 bits (64), Expect = 8.2
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 250 NIMSGYEFI---NKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWL-----NRDKTSPFE 301
NI G +FI N+ + + + ++ + + T + +S G+AV N+ T+P
Sbjct: 683 NISRGLQFILTPNEFSAQTFYALSPTMHSQATQVPISQSDGSAVAATNTIANQINTAPKP 742
Query: 302 LYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGRE 361
++ P PLP I H+ + P G Q+ ++ T LV +E
Sbjct: 743 AAPTTLQIPP-------------PLPAIKHLPRPETLHPNPAGLQESISDVTTCLVASKE 789
Query: 362 GLDSAK 367
+ A+
Sbjct: 790 NVQVAQ 795
>gi|155969701 espin-like [Homo sapiens]
Length = 1005
Score = 29.3 bits (64), Expect = 8.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 405 PGTSVL-DTCRKANAIPDGPRGYRMITEGGVSI 436
P T L DTCR+A+A P R I E GVS+
Sbjct: 620 PSTRPLQDTCREASASPPRSEAQRQIQEWGVSV 652
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,447,083
Number of Sequences: 37866
Number of extensions: 748623
Number of successful extensions: 1737
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1736
Number of HSP's gapped (non-prelim): 11
length of query: 477
length of database: 18,247,518
effective HSP length: 106
effective length of query: 371
effective length of database: 14,233,722
effective search space: 5280710862
effective search space used: 5280710862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.