Search of human proteins with 94536866

Search of human proteins with 94536866

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|94536866 zymogen granule protein 16 homolog B [Homo sapiens]
         (208 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|94536866 zymogen granule protein 16 homolog B [Homo sapiens]       426   e-120
gi|22748737 zymogen granule protein 16 homolog [Homo sapiens]          79   3e-15
gi|55956910 meningioma  1 [Homo sapiens]                               30   1.9  
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]      29   3.2  
gi|55770876 notch4 preproprotein [Homo sapiens]                        29   3.2  
gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens]      29   3.2  
gi|239756667 PREDICTED: hypothetical protein [Homo sapiens]            27   9.4  
gi|239751165 PREDICTED: hypothetical protein XP_002347739 [Homo ...    27   9.4  
gi|239745650 PREDICTED: hypothetical protein XP_002344167 [Homo ...    27   9.4  

>gi|94536866 zymogen granule protein 16 homolog B [Homo sapiens]
          Length = 208

 Score =  426 bits (1096), Expect = e-120
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MGAQGAQESIKAMWRVPGTTRRPVTGESPGMHRPEAMLLLLTLALLGGPTWAGKMYGPGG 60
           MGAQGAQESIKAMWRVPGTTRRPVTGESPGMHRPEAMLLLLTLALLGGPTWAGKMYGPGG
Sbjct: 1   MGAQGAQESIKAMWRVPGTTRRPVTGESPGMHRPEAMLLLLTLALLGGPTWAGKMYGPGG 60

Query: 61  GKYFSTTEDYDHEITGLRVSVGLLLVKSVQVKLGDSWDVKLGALGGNTQEVTLQPGEYIT 120
           GKYFSTTEDYDHEITGLRVSVGLLLVKSVQVKLGDSWDVKLGALGGNTQEVTLQPGEYIT
Sbjct: 61  GKYFSTTEDYDHEITGLRVSVGLLLVKSVQVKLGDSWDVKLGALGGNTQEVTLQPGEYIT 120

Query: 121 KVFVAFQAFLRGMVMYTSKDRYFYFGKLDGQISSAYPSQEGQVLVGIYGQYQLLGIKSIG 180
           KVFVAFQAFLRGMVMYTSKDRYFYFGKLDGQISSAYPSQEGQVLVGIYGQYQLLGIKSIG
Sbjct: 121 KVFVAFQAFLRGMVMYTSKDRYFYFGKLDGQISSAYPSQEGQVLVGIYGQYQLLGIKSIG 180

Query: 181 FEWNYPLEEPTTEPPVNLTYSANSPVGR 208
           FEWNYPLEEPTTEPPVNLTYSANSPVGR
Sbjct: 181 FEWNYPLEEPTTEPPVNLTYSANSPVGR 208


>gi|22748737 zymogen granule protein 16 homolog [Homo sapiens]
          Length = 167

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 56  YGPGGGKYFSTT-EDYDHEITGLRVSVGLLLVKSVQVKLGDSWDVKLGALGGNTQEVTLQ 114
           YG GGGK FS +    D  IT LRV V    +  +QV+ G  W   +G   G+ +E+ L 
Sbjct: 30  YGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLH 89

Query: 115 PGEYITKVFVAFQAFLRGMVMYTSKDRYFYFGKLDGQISSAYPSQEGQVLVGIYGQYQLL 174
           PGE + +V   ++ +L+ +V  T K RY  FGK  G   +A P     VL  I G+   L
Sbjct: 90  PGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSL 149

Query: 175 GIKSIGFEWN-YP 186
            I +IG  W+ YP
Sbjct: 150 -IDAIGLHWDVYP 161


>gi|55956910 meningioma  1 [Homo sapiens]
          Length = 1320

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 16   VPGTTRRPVTGESPGMHRPEAMLLLLTLALLGGPTWAGKMYGPGGG 61
            V G+ + P  G   G H P+A    L L ++   T     YG GGG
Sbjct: 1078 VTGSPKLPPRGVGAGEHGPKAPPPALGLGIMSNSTSTPDSYGGGGG 1123


>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
          Length = 1159

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 17 PG-TTRRPVTGESPGMHRPEAMLLLLTLALLGGPTWAGKMYGPG 59
          PG T R P  G  P    P +  LLL L LLG    AG+   PG
Sbjct: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPG 56


>gi|55770876 notch4 preproprotein [Homo sapiens]
          Length = 2003

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 12   AMWRVPGTTRRPVTGESPGMHRP 34
            A+W  PG TRRP T  +P   RP
Sbjct: 1480 ALWLPPGFTRRPRTQSAPHRRRP 1502


>gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens]
          Length = 1093

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 24/126 (19%)

Query: 98  DVKLGALGGNTQEVTLQPGEYITKVFVAFQAFLRGMVMYTSKDRYFYFGKLDGQ------ 151
           DVK GA     Q V LQ    + K  +  +A L        + R+ Y   L+G+      
Sbjct: 169 DVKTGA---QPQIVVLQGAAGVGKTTLVRKAMLDWAEGSLYQQRFKYVFYLNGREINQLK 225

Query: 152 -------ISSAYPSQEGQVLVGIYGQYQLLGIKSIGFEWNYPLEEP--------TTEPPV 196
                  IS  +PS EG +   +Y    LL I     E N+  EEP        T E PV
Sbjct: 226 ERSFAQLISKDWPSTEGPIEEIMYQPSSLLFIIDSFDELNFAFEEPEFALCEDWTQEHPV 285

Query: 197 NLTYSA 202
           +   S+
Sbjct: 286 SFLMSS 291


>gi|239756667 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 484

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 74  ITGLRVSVGLLLVKSVQVKLGDSWDVKLGAL 104
           +TGL  ++ LLLVK+V  +  D W + +G L
Sbjct: 337 VTGLLDALALLLVKAVLKEHSDVWLILIGVL 367


>gi|239751165 PREDICTED: hypothetical protein XP_002347739 [Homo
           sapiens]
          Length = 484

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 74  ITGLRVSVGLLLVKSVQVKLGDSWDVKLGAL 104
           +TGL  ++ LLLVK+V  +  D W + +G L
Sbjct: 337 VTGLLDALALLLVKAVLKEHSDVWLILIGVL 367


>gi|239745650 PREDICTED: hypothetical protein XP_002344167 [Homo
           sapiens]
          Length = 484

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 74  ITGLRVSVGLLLVKSVQVKLGDSWDVKLGAL 104
           +TGL  ++ LLLVK+V  +  D W + +G L
Sbjct: 337 VTGLLDALALLLVKAVLKEHSDVWLILIGVL 367


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,687,128
Number of Sequences: 37866
Number of extensions: 386177
Number of successful extensions: 856
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 9
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.