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Search of human proteins with 94536776
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94536776 zinc finger, CW type with PWWP domain 2 [Homo
sapiens]
(356 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94536776 zinc finger, CW type with PWWP domain 2 [Homo sapiens] 745 0.0
gi|94721344 zinc finger, CW type with PWWP domain 1 [Homo sapiens] 79 5e-15
gi|28872812 MORC family CW-type zinc finger 3 [Homo sapiens] 45 8e-05
gi|4504191 mutS homolog 6 [Homo sapiens] 45 1e-04
gi|145553976 zinc finger, CW type with coiled-coil domain 2 isof... 43 5e-04
gi|145553971 zinc finger, CW type with coiled-coil domain 2 isof... 43 5e-04
gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens] 39 0.007
gi|19913356 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 37 0.021
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 37 0.021
gi|6594683 Wolf-Hirschhorn syndrome candidate 1 protein isoform ... 37 0.021
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 37 0.021
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 37 0.021
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 37 0.021
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 37 0.035
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 37 0.035
gi|13699811 WHSC1L1 protein isoform long [Homo sapiens] 36 0.046
gi|13699813 WHSC1L1 protein isoform short [Homo sapiens] 36 0.046
gi|125988409 RED protein [Homo sapiens] 35 0.10
gi|38569484 kinesin family member 21A [Homo sapiens] 35 0.13
gi|109637791 transcription factor-like nuclear regulator [Homo s... 35 0.13
gi|13540513 oxysterol binding protein 2 isoform a [Homo sapiens] 35 0.13
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 34 0.18
gi|32967605 bromodomain adjacent to zinc finger domain, 1A isofo... 34 0.23
gi|32967603 bromodomain adjacent to zinc finger domain, 1A isofo... 34 0.23
gi|194578896 golgi autoantigen, golgin subfamily a, 8E [Homo sap... 33 0.30
gi|4758516 hepatoma-derived growth factor isoform a [Homo sapiens] 33 0.39
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens] 32 0.67
gi|238814389 zinc finger, MYND domain containing 11 isoform a [H... 32 0.87
gi|238814387 zinc finger, MYND domain containing 11 isoform b [H... 32 0.87
gi|238814385 zinc finger, MYND domain containing 11 isoform a [H... 32 0.87
>gi|94536776 zinc finger, CW type with PWWP domain 2 [Homo sapiens]
Length = 356
Score = 745 bits (1924), Expect = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 1 MDKEKLDVKIEYCNYAMDSSVENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYC 60
MDKEKLDVKIEYCNYAMDSSVENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYC
Sbjct: 1 MDKEKLDVKIEYCNYAMDSSVENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYC 60
Query: 61 FMNTDSRYNNCSISEEDFPEESQLHQCGFKIVYSQLPLGSLVLVKLQNWPSWPGILCPDR 120
FMNTDSRYNNCSISEEDFPEESQLHQCGFKIVYSQLPLGSLVLVKLQNWPSWPGILCPDR
Sbjct: 61 FMNTDSRYNNCSISEEDFPEESQLHQCGFKIVYSQLPLGSLVLVKLQNWPSWPGILCPDR 120
Query: 121 FKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIKATFVGHYSITLKPEKCKNKKKWYKSALQ 180
FKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIKATFVGHYSITLKPEKCKNKKKWYKSALQ
Sbjct: 121 FKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIKATFVGHYSITLKPEKCKNKKKWYKSALQ 180
Query: 181 EACLLYGYSHEQRLEMCCLSKLQDKSETHDKVAALVKKRKQTSKNNIEKKKPKFRKRKRK 240
EACLLYGYSHEQRLEMCCLSKLQDKSETHDKVAALVKKRKQTSKNNIEKKKPKFRKRKRK
Sbjct: 181 EACLLYGYSHEQRLEMCCLSKLQDKSETHDKVAALVKKRKQTSKNNIEKKKPKFRKRKRK 240
Query: 241 AILKCSFENVYSDDALSKENRVVCETEVLLKELEQMLQQALQPTATPDESEEGHGEEINM 300
AILKCSFENVYSDDALSKENRVVCETEVLLKELEQMLQQALQPTATPDESEEGHGEEINM
Sbjct: 241 AILKCSFENVYSDDALSKENRVVCETEVLLKELEQMLQQALQPTATPDESEEGHGEEINM 300
Query: 301 GEKLSKCSPEAPAGSLFENHYEEDYLVIDGIKLKAGECIEDITNKFKEIDALMSEF 356
GEKLSKCSPEAPAGSLFENHYEEDYLVIDGIKLKAGECIEDITNKFKEIDALMSEF
Sbjct: 301 GEKLSKCSPEAPAGSLFENHYEEDYLVIDGIKLKAGECIEDITNKFKEIDALMSEF 356
>gi|94721344 zinc finger, CW type with PWWP domain 1 [Homo sapiens]
Length = 648
Score = 79.3 bits (194), Expect = 5e-15
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 29 VWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEEDFPEESQLHQCG 88
VWVQC NC KWR L V D W C NTD +YN C I EE +
Sbjct: 255 VWVQCSFPNCGKWRRLCGNIDPSVLPDN-WSCDQNTDVQYNRCDIPEETWTGLES----- 308
Query: 89 FKIVYSQLPLGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDP--DGNVEEYHIEFLGDPH 146
+ Y+ GS++ K +P WPG++ D G+Y + D +YH+ F G+
Sbjct: 309 -DVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFFGETV 367
Query: 147 SRSWIKATFVGHY 159
SR+WI + ++
Sbjct: 368 SRAWIPVNMLKNF 380
>gi|28872812 MORC family CW-type zinc finger 3 [Homo sapiens]
Length = 939
Score = 45.4 bits (106), Expect = 8e-05
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 15 YAMDSSVENMYV--NKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCS 72
Y ++ VE++ ++ WVQC+ CLKWR L E WYC N D ++ NC
Sbjct: 393 YPLNLPVEDIQKRPDQTWVQCDA--CLKWRKLPD---GMDQLPEKWYCSNNPDPQFRNCE 447
Query: 73 ISEEDFPEESQLHQCGFKIVYSQ 95
+ EE PE+ L ++ Y +
Sbjct: 448 VPEE--PEDEDLVHPTYEKTYKK 468
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 45.1 bits (105), Expect = 1e-04
Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 32/212 (15%)
Query: 99 GSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIKATFVGH 158
G LV K++ +P WP ++ F G ++ G H++F D +R W+ +
Sbjct: 93 GDLVWAKMEGYPWWPCLVYNHPFDGTFIR--EKGKSVRVHVQFFDDSPTRGWVSKRLLKP 150
Query: 159 YSITLKPEKCK-----NKKKWYKSALQEACLLYGYSHEQRLEMC-CLSKLQDKSETHDKV 212
Y+ + E K + K A+Q A +RLE+ C + + E +V
Sbjct: 151 YTGSKSKEAQKGGHFYSAKPEILRAMQRADEALNKDKIKRLELAVCDEPSEPEEEEEMEV 210
Query: 213 AALVKKRKQTSKNNIEKK---KPKFRKRKRKAILKCSFENVYSDDALSKENRVVCETEVL 269
K N IE + +PK + +R + K+ RV+ ++E
Sbjct: 211 GTTYVTDKSEEDNEIESEEEVQPKTQGSRRSS-------------RQIKKRRVISDSESD 257
Query: 270 LKELEQMLQQALQPTATPDESEEGHGEEINMG 301
+ + + PD EEG +EI+ G
Sbjct: 258 IGGSDVEFK--------PDTKEEGSSDEISSG 281
>gi|145553976 zinc finger, CW type with coiled-coil domain 2 isoform
a [Homo sapiens]
Length = 937
Score = 42.7 bits (99), Expect = 5e-04
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 27 NKVWVQCENENCLKWRLLSSEDSAKVDHD---EPWYCFMNTDSRYNNCSISEE 76
++ WVQC+ CLKWR L K+D W+C+ N+ +Y CS+ EE
Sbjct: 423 DQTWVQCDE--CLKWRKLPG----KIDPSMLPARWFCYYNSHPKYRRCSVPEE 469
>gi|145553971 zinc finger, CW type with coiled-coil domain 2 isoform
b [Homo sapiens]
Length = 900
Score = 42.7 bits (99), Expect = 5e-04
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 27 NKVWVQCENENCLKWRLLSSEDSAKVDHD---EPWYCFMNTDSRYNNCSISEE 76
++ WVQC+ CLKWR L K+D W+C+ N+ +Y CS+ EE
Sbjct: 423 DQTWVQCDE--CLKWRKLPG----KIDPSMLPARWFCYYNSHPKYRRCSVPEE 469
>gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens]
Length = 970
Score = 38.9 bits (89), Expect = 0.007
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 31 VQCENENCLKWRLLSSE-DSAKVDHDEPWYCFMNTDSRYNNCSISEE 76
+QC+ CLKWR L + S + D+ + W C MN D + C SE+
Sbjct: 435 IQCDL--CLKWRTLPFQLSSVEKDYPDTWVCSMNPDPEQDRCEASEQ 479
>gi|19913356 Wolf-Hirschhorn syndrome candidate 1 protein isoform 3
[Homo sapiens]
Length = 647
Score = 37.4 bits (85), Expect = 0.021
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDG-NVEEYHIEFLGDPHSRSWI 151
+G LV K+ +P WP ++ D Y + +YH++F GD R+WI
Sbjct: 222 VGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWI 276
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 37.4 bits (85), Expect = 0.021
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDG-NVEEYHIEFLGDPHSRSWI 151
+G LV K+ +P WP ++ D Y + +YH++F GD R+WI
Sbjct: 222 VGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWI 276
>gi|6594683 Wolf-Hirschhorn syndrome candidate 1 protein isoform 4
[Homo sapiens]
Length = 629
Score = 37.4 bits (85), Expect = 0.021
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDG-NVEEYHIEFLGDPHSRSWI 151
+G LV K+ +P WP ++ D Y + +YH++F GD R+WI
Sbjct: 222 VGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWI 276
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 37.4 bits (85), Expect = 0.021
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDG-NVEEYHIEFLGDPHSRSWI 151
+G LV K+ +P WP ++ D Y + +YH++F GD R+WI
Sbjct: 222 VGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWI 276
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 37.4 bits (85), Expect = 0.021
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDG-NVEEYHIEFLGDPHSRSWI 151
+G LV K+ +P WP ++ D Y + +YH++F GD R+WI
Sbjct: 222 VGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWI 276
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 37.4 bits (85), Expect = 0.021
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDG-NVEEYHIEFLGDPHSRSWI 151
+G LV K+ +P WP ++ D Y + +YH++F GD R+WI
Sbjct: 222 VGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWI 276
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 36.6 bits (83), Expect = 0.035
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGN--VEEYHIEFLGDPHSRSWIK--- 152
+G L+ K + P WP +C D + +Y++E GDP R+W+
Sbjct: 54 VGDLIWAKFKRRPWWPCRICSDPLINTHSKMKVSNRRPYRQYYVEAFGDPSERAWVAGKA 113
Query: 153 -ATFVGHYSITLKP---EKCKNKKKWYKSALQEACL 184
F G + P + K K+K Y+ + + L
Sbjct: 114 IVMFEGRHQFEELPVLRRRGKQKEKGYRHKVPQKIL 149
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 36.6 bits (83), Expect = 0.035
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGN--VEEYHIEFLGDPHSRSWIK--- 152
+G L+ K + P WP +C D + +Y++E GDP R+W+
Sbjct: 323 VGDLIWAKFKRRPWWPCRICSDPLINTHSKMKVSNRRPYRQYYVEAFGDPSERAWVAGKA 382
Query: 153 -ATFVGHYSITLKP---EKCKNKKKWYKSALQEACL 184
F G + P + K K+K Y+ + + L
Sbjct: 383 IVMFEGRHQFEELPVLRRRGKQKEKGYRHKVPQKIL 418
>gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]
Length = 1437
Score = 36.2 bits (82), Expect = 0.046
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 12/164 (7%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIKATFVG 157
+G LV K+ +P WP ++ D + + G EYH++F + R+W+ V
Sbjct: 270 VGDLVWSKVGTYPWWPCMVSSDPQLEVHTKINTRG-AREYHVQFFSNQPERAWVHEKRVR 328
Query: 158 HYSITLKPEKCKNKKKWYKSALQEACLLYGYSHEQRLEMCCLSKLQDKSETHDKVAALVK 217
Y K Y+ L EA +H ++ ++ +++++ +A K
Sbjct: 329 EY----------KGHKQYEELLAEA-TKQASNHSEKQKIRKPRPQRERAQWDIGIAHAEK 377
Query: 218 KRKQTSKNNIEKKKPKFRKRKRKAILKCSFENVYSDDALSKENR 261
K T + IE+ + ++ + L + ++V S + K R
Sbjct: 378 ALKMTREERIEQYTFIYIDKQPEEALSQAKKSVASKTEVKKTRR 421
>gi|13699813 WHSC1L1 protein isoform short [Homo sapiens]
Length = 645
Score = 36.2 bits (82), Expect = 0.046
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 12/164 (7%)
Query: 98 LGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIKATFVG 157
+G LV K+ +P WP ++ D + + G EYH++F + R+W+ V
Sbjct: 270 VGDLVWSKVGTYPWWPCMVSSDPQLEVHTKINTRG-AREYHVQFFSNQPERAWVHEKRVR 328
Query: 158 HYSITLKPEKCKNKKKWYKSALQEACLLYGYSHEQRLEMCCLSKLQDKSETHDKVAALVK 217
Y K Y+ L EA +H ++ ++ +++++ +A K
Sbjct: 329 EY----------KGHKQYEELLAEA-TKQASNHSEKQKIRKPRPQRERAQWDIGIAHAEK 377
Query: 218 KRKQTSKNNIEKKKPKFRKRKRKAILKCSFENVYSDDALSKENR 261
K T + IE+ + ++ + L + ++V S + K R
Sbjct: 378 ALKMTREERIEQYTFIYIDKQPEEALSQAKKSVASKTEVKKTRR 421
>gi|125988409 RED protein [Homo sapiens]
Length = 557
Score = 35.0 bits (79), Expect = 0.10
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 176 KSALQEACLLYGYSHEQRLEMCCLSKLQDKSETH---DKVAALVKKRKQTSKNNIEKKKP 232
K AL +A YG + + + DK+E K++A+++KRK+ + +E K+P
Sbjct: 496 KEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEADGVEVKRP 555
Query: 233 KF 234
K+
Sbjct: 556 KY 557
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 34.7 bits (78), Expect = 0.13
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 223 SKNNIEKKKPKFRKRKRKAILKCSFENVYSDDALSKENRVVCETEVLLKELEQMLQQALQ 282
+K ++EK K K KRK+K++ E+ D KE + V E E ELE Q +
Sbjct: 541 AKKDLEKLKRK-EKRKKKSV--AGKEDNTDTDQEKKEEKGVSERE--NNELEVEESQEVS 595
Query: 283 PTATPDESEEGHGEEINMGEKLSKCSPEAPAGSLFENHYEEDYLVIDGIKLKAGECIEDI 342
+E EE ++I+ GE S E+ + S + +Y+ D I + I+++
Sbjct: 596 DHEDEEEEEEEEEDDIDGGES----SDESDSESDEKANYQADLANITCEIAIKQKLIDEL 651
Query: 343 TNKFKEIDALMSEF 356
N K + L ++
Sbjct: 652 ENSQKRLQTLKKQY 665
>gi|109637791 transcription factor-like nuclear regulator [Homo
sapiens]
Length = 2624
Score = 34.7 bits (78), Expect = 0.13
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 20/147 (13%)
Query: 211 KVAALVKKRKQ-TSKNNIEKKKPKFRKRKRKAILKCSFENVYSDDALSKENRVVCETEVL 269
KV A +KRKQ + KN+ K+K + RK + K + E V +D S +R + +TE
Sbjct: 373 KVLAEEEKRKQKSVKNHSLKEKKSTKPRKNVKVKKVACEGVNNDPDESMSSR-ISDTERS 431
Query: 270 LKELEQMLQQALQPTATPDESEEGHGEEINMGEKLSKCSPEAPAGSLFENHYEEDYLVID 329
K+ + + +++L T + +++E+ E+++ +K + + A L N+ E+ V
Sbjct: 432 QKDAQTVEEESL--TLSREDAEQ-VALEVDLNQKKRRRKKQDGANELGVNNLLENATVQA 488
Query: 330 G---------------IKLKAGECIED 341
G +LK GEC ++
Sbjct: 489 GPSKGEKHKNKCQAIRPELKEGECSKE 515
>gi|13540513 oxysterol binding protein 2 isoform a [Homo sapiens]
Length = 916
Score = 34.7 bits (78), Expect = 0.13
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 80 EESQLHQCGFKIVYSQL----PLGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGNVE 135
E +L G + + Q+ P + + W W I +F+GKY++ P G +
Sbjct: 608 ELDRLDDMGLRSLCEQVSHHPPSAAHYVFSKHGWSLWQEITISSKFRGKYISIMPLGAI- 666
Query: 136 EYHIEFLGDPHSRSWIKATFVGHYSITLK 164
H+EF + W K+T H I K
Sbjct: 667 --HLEFQASGNHYVWRKSTSTVHNIIVGK 693
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 25/122 (20%)
Query: 201 KLQDKSETHDKVAALVKKRKQTSKNNIEKKKPKFRKRKRKAI------------LKCSFE 248
K ++ TH K+ Q ++ +FRK+ K + ++ F
Sbjct: 1726 KTIEEQMTHRKMVLF-----QEESGKFKQSAEEFRKKMEKLMESKVITENDISGIRLDFV 1780
Query: 249 NVYSDDALSKENRVVCETEVLLKELEQMLQQALQPTATPDESEEGHGEEINMGEKLSKCS 308
++ +++ ++EN +CET + KELE+ LQQ ++ ++G E N +K K
Sbjct: 1781 SLQQENSRAQENAKLCETNI--KELERQLQQ------YREQMQQGQHMEANHYQKCQKLE 1832
Query: 309 PE 310
E
Sbjct: 1833 DE 1834
Score = 29.6 bits (65), Expect = 4.3
Identities = 30/157 (19%), Positives = 70/157 (44%), Gaps = 21/157 (13%)
Query: 200 SKLQDKSETHDKVAALVKKRKQTSKNNIEKKKPKFR-------KRKRKAILKCSFENVYS 252
SKL K +++ A +KK+ K+ +E++ PK R +++++ + S + + +
Sbjct: 1134 SKLTGKISELERMVAELKKQ----KSRVEEELPKVREAAENELRKQQRNVEDISLQKIRA 1189
Query: 253 DDALSKENR----VVCETEVLLKELEQMLQQALQPTATPDESEEGHGEEINMGEKLSKCS 308
+ + R +V E E +ELE++ Q ++ A EE N+ ++
Sbjct: 1190 ESEAKQYRRELETIVREKEAAERELERVRQLTIEAEAKRAAVEE------NLLNFRNQLE 1243
Query: 309 PEAPAGSLFENHYEEDYLVIDGIKLKAGECIEDITNK 345
E+H + L ++ ++ + + +E++ K
Sbjct: 1244 ENTFTRRTLEDHLKRKDLSLNDLEQQKNKLMEELRRK 1280
>gi|32967605 bromodomain adjacent to zinc finger domain, 1A isoform
b [Homo sapiens]
Length = 1524
Score = 33.9 bits (76), Expect = 0.23
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 201 KLQDKSETHDKVAALVKKRKQTSKNNIEKKKPKFRKRKRKAILKCSFENVYSDDALSKEN 260
K + + ++ AA ++KRK+ E+K K K++ + + N +D ++ +E
Sbjct: 620 KAEQHRKEREEAAARIRKRKEEKLKEQEQKM----KEKQEKLKEDEQRNSTADISIGEEE 675
Query: 261 RVVCETEVLLKELEQMLQQALQPTATPDESEEGHGEEINMGEK 303
R +T + K+ EQ ++ Q T DE + G + G++
Sbjct: 676 REDFDTSIESKDTEQ--KELDQDMVTEDEDDPGSHKRGRRGKR 716
>gi|32967603 bromodomain adjacent to zinc finger domain, 1A isoform
a [Homo sapiens]
Length = 1556
Score = 33.9 bits (76), Expect = 0.23
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 201 KLQDKSETHDKVAALVKKRKQTSKNNIEKKKPKFRKRKRKAILKCSFENVYSDDALSKEN 260
K + + ++ AA ++KRK+ E+K K K++ + + N +D ++ +E
Sbjct: 652 KAEQHRKEREEAAARIRKRKEEKLKEQEQKM----KEKQEKLKEDEQRNSTADISIGEEE 707
Query: 261 RVVCETEVLLKELEQMLQQALQPTATPDESEEGHGEEINMGEK 303
R +T + K+ EQ ++ Q T DE + G + G++
Sbjct: 708 REDFDTSIESKDTEQ--KELDQDMVTEDEDDPGSHKRGRRGKR 748
>gi|194578896 golgi autoantigen, golgin subfamily a, 8E [Homo
sapiens]
Length = 430
Score = 33.5 bits (75), Expect = 0.30
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 26/146 (17%)
Query: 202 LQDKSETHDKVAAL---VKKRKQTSKNNIEKKKPKFRKRKRKAILKCSFENVYSDDALSK 258
LQ + E + +++ L K+R + + +++++ + R+++ + +N + + L+
Sbjct: 117 LQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLREQEERLQQLAEPQNSFKE--LNN 174
Query: 259 ENRVVCETEVLLKELEQMLQQALQPTATPDESE------------EGHGEE--INMGEKL 304
EN+ V + E +KEL++ L + A+ + + EGHG E + GE+
Sbjct: 175 ENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQLSLMALPGEGHGGEHLDSEGEEA 234
Query: 305 SKCSPEAP-------AGSLFENHYEE 323
+ P P A S F +H EE
Sbjct: 235 PRPMPSVPEDLESREAMSGFMDHLEE 260
>gi|4758516 hepatoma-derived growth factor isoform a [Homo sapiens]
Length = 240
Score = 33.1 bits (74), Expect = 0.39
Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 28/231 (12%)
Query: 99 GSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIKATFVGH 158
G LV K++ +P WP + D V +Y + F G H +++ +
Sbjct: 13 GDLVFAKMKGYPHWPARI--DEMPEAAVK----STANKYQVFFFGT-HETAFLGPKDLFP 65
Query: 159 YSITLKPEKCKNKKKWYKSALQE-----ACLLYGYSHEQRLEMCCLSKLQDKSETHDKVA 213
Y + + NK+K + L E GY Q+ C+ + + + E +
Sbjct: 66 YEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKS--CVEEPEPEPEAAEGDG 123
Query: 214 ALVKKRKQTSKNNIEKK----KPKFRKRKRKAILKCSFENVYSDDALSKE--NRVVCETE 267
KK ++ E K +P K ++ A+ + + + + KE N E E
Sbjct: 124 D--KKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKE 181
Query: 268 VLLKELEQMLQQALQPTATPDESEEGHG------EEINMGEKLSKCSPEAP 312
E+E+ L ++ +TP E G G EE + E+ +K EAP
Sbjct: 182 AATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAP 232
>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
Length = 1017
Score = 32.3 bits (72), Expect = 0.67
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 199 LSKLQDKSETHDKVAALVKKRKQTSKNNIEKK-----KPKFRKRKRKAILKCSFENVYSD 253
+SK + K + DK + KRK+ K EK+ +PK +K+K+K K S ++ YSD
Sbjct: 528 ISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKK--KKSKQHDYSD 585
>gi|238814389 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 32.0 bits (71), Expect = 0.87
Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 93 YSQLPLGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIK 152
Y +P LV K++ + WP V D V+ + F G H R+WI
Sbjct: 275 YPCIPNHELVWAKMKGFGFWPA----------KVMQKEDNQVD---VRFFGHHHQRAWIP 321
Query: 153 ATFVGHYSITLKPEKCKNKKKWYKSA----LQEACLLYG----YSHEQRLEMCCLSKLQD 204
+ + ++ + K W K+ L + L G +E R E S +
Sbjct: 322 SENIQDITVNIHRLHVKRSMGWKKACDELELHQRFLREGRFWKSKNEDRGEEEAESSISS 381
Query: 205 KSETHDKVAALVKKRKQTSKNNIEKKK 231
S KV + +K ++E KK
Sbjct: 382 TSNEQLKVTQEPRAKKGRRNQSVEPKK 408
>gi|238814387 zinc finger, MYND domain containing 11 isoform b [Homo
sapiens]
Length = 567
Score = 32.0 bits (71), Expect = 0.87
Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 93 YSQLPLGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIK 152
Y +P LV K++ + WP V D V+ + F G H R+WI
Sbjct: 274 YPCIPNHELVWAKMKGFGFWPA----------KVMQKEDNQVD---VRFFGHHHQRAWIP 320
Query: 153 ATFVGHYSITLKPEKCKNKKKWYKSA----LQEACLLYG----YSHEQRLEMCCLSKLQD 204
+ + ++ + K W K+ L + L G +E R E S +
Sbjct: 321 SENIQDITVNIHRLHVKRSMGWKKACDELELHQRFLREGRFWKSKNEDRGEEEAESSISS 380
Query: 205 KSETHDKVAALVKKRKQTSKNNIEKKK 231
S KV + +K ++E KK
Sbjct: 381 TSNEQLKVTQEPRAKKGRRNQSVEPKK 407
>gi|238814385 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 32.0 bits (71), Expect = 0.87
Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 93 YSQLPLGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDPDGNVEEYHIEFLGDPHSRSWIK 152
Y +P LV K++ + WP V D V+ + F G H R+WI
Sbjct: 275 YPCIPNHELVWAKMKGFGFWPA----------KVMQKEDNQVD---VRFFGHHHQRAWIP 321
Query: 153 ATFVGHYSITLKPEKCKNKKKWYKSA----LQEACLLYG----YSHEQRLEMCCLSKLQD 204
+ + ++ + K W K+ L + L G +E R E S +
Sbjct: 322 SENIQDITVNIHRLHVKRSMGWKKACDELELHQRFLREGRFWKSKNEDRGEEEAESSISS 381
Query: 205 KSETHDKVAALVKKRKQTSKNNIEKKK 231
S KV + +K ++E KK
Sbjct: 382 TSNEQLKVTQEPRAKKGRRNQSVEPKK 408
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,742,128
Number of Sequences: 37866
Number of extensions: 711629
Number of successful extensions: 2739
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 2610
Number of HSP's gapped (non-prelim): 176
length of query: 356
length of database: 18,247,518
effective HSP length: 103
effective length of query: 253
effective length of database: 14,347,320
effective search space: 3629871960
effective search space used: 3629871960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.