Search of human proteins with 94420683

Search of human proteins with 94420683

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|94420683 tRNA methyltransferase 11 [Homo sapiens]
         (463 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|94420683 tRNA methyltransferase 11 [Homo sapiens]                  957   0.0  
gi|13376880 THUMP domain containing 2 [Homo sapiens]                   36   0.084
gi|92859575 methyltransferase like 5 [Homo sapiens]                    30   3.5  
gi|55741870 zinc finger protein 483 isoform b [Homo sapiens]           30   4.6  
gi|190014620 zinc finger protein 483 isoform a [Homo sapiens]          30   4.6  

>gi|94420683 tRNA methyltransferase 11 [Homo sapiens]
          Length = 463

 Score =  957 bits (2475), Expect = 0.0
 Identities = 463/463 (100%), Positives = 463/463 (100%)

Query: 1   MALSCTLNRYLLLMAQEHLEFRLPEIKSLLLLFGGQFASSQETYGKSPFWILSIPSEDIA 60
           MALSCTLNRYLLLMAQEHLEFRLPEIKSLLLLFGGQFASSQETYGKSPFWILSIPSEDIA
Sbjct: 1   MALSCTLNRYLLLMAQEHLEFRLPEIKSLLLLFGGQFASSQETYGKSPFWILSIPSEDIA 60

Query: 61  RNLMKRTVCAKSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLT 120
           RNLMKRTVCAKSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLT
Sbjct: 61  RNLMKRTVCAKSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLT 120

Query: 121 QEEKIKRIDALEFLPFEGKVNLKKPQHVFSVLEDYGLDPNCIPENPHNIYFGRWIADGQR 180
           QEEKIKRIDALEFLPFEGKVNLKKPQHVFSVLEDYGLDPNCIPENPHNIYFGRWIADGQR
Sbjct: 121 QEEKIKRIDALEFLPFEGKVNLKKPQHVFSVLEDYGLDPNCIPENPHNIYFGRWIADGQR 180

Query: 181 ELIESYSVKKRHFIGNTSMDAGLSFIMANHGKVKENDIVFDPFVGTGGLLIACAHFGAYV 240
           ELIESYSVKKRHFIGNTSMDAGLSFIMANHGKVKENDIVFDPFVGTGGLLIACAHFGAYV
Sbjct: 181 ELIESYSVKKRHFIGNTSMDAGLSFIMANHGKVKENDIVFDPFVGTGGLLIACAHFGAYV 240

Query: 241 YGTDIDYNTVHGLGKATRKNQKWRGPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGT 300
           YGTDIDYNTVHGLGKATRKNQKWRGPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGT
Sbjct: 241 YGTDIDYNTVHGLGKATRKNQKWRGPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGT 300

Query: 301 YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPESHVPVSLSYHLSDMFLDLLNFA 360
           YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPESHVPVSLSYHLSDMFLDLLNFA
Sbjct: 301 YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPESHVPVSLSYHLSDMFLDLLNFA 360

Query: 361 AETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKLSSHTSRRLITMEKVKKFE 420
           AETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKLSSHTSRRLITMEKVKKFE
Sbjct: 361 AETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKLSSHTSRRLITMEKVKKFE 420

Query: 421 NRDQYSHLLSDHFLPYQGHNSFREKYFSGVTKRIAKEEKSTQE 463
           NRDQYSHLLSDHFLPYQGHNSFREKYFSGVTKRIAKEEKSTQE
Sbjct: 421 NRDQYSHLLSDHFLPYQGHNSFREKYFSGVTKRIAKEEKSTQE 463


>gi|13376880 THUMP domain containing 2 [Homo sapiens]
          Length = 473

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 29/194 (14%)

Query: 104 SDSTYKIKIH---TFNKTLTQEEKIKRIDALEFLPFEGKVNLKKPQ-HVFSVLEDYGLDP 159
           +D T+++      T  K  T +E  K I       F  K +L+ PQ  +F  L D     
Sbjct: 173 NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLND----- 227

Query: 160 NCIPENPHNIYFGRWIADGQRELIESYSVKKRHFIGNTSMDAGLSFIMANHGKVKENDIV 219
                    IY    I       +   S+  R +I    + + +++ MA+   +K    V
Sbjct: 228 ---------IYSVVGIP------VFRVSLASRAYIKTAGLRSTIAWAMASLADIKAGAFV 272

Query: 220 FDPFVGTGGLLIACAHFGAYVYGTDIDYNTVHGLGKATRKNQKWRGPDENI---RANLRQ 276
            DP  G G +L+  A     VY    D +    LG  T  N K  G ++ I   + ++ +
Sbjct: 273 LDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLG--TWDNLKAAGLEDKIELLKISVIE 330

Query: 277 YGLEKYYLDVLVSD 290
             L    +D+++SD
Sbjct: 331 LPLPSESVDIIISD 344


>gi|92859575 methyltransferase like 5 [Homo sapiens]
          Length = 209

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 215 ENDIVFDPFVGTGGLLIACAHFGAYV-YGTDIDYNTVHGLGKATRKNQKWRGPDENIRAN 273
           EN +V D   G G L I  A  GA +  G DID + +                 E    N
Sbjct: 51  ENKVVADLGCGCGVLSIGTAMLGAGLCVGFDIDEDAL-----------------EIFNRN 93

Query: 274 LRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRES 316
             ++ L    +D++  D    S R    FD +I +PP+G + +
Sbjct: 94  AEEFELTN--IDMVQCDVCLLSNRMSKSFDTVIMNPPFGTKNN 134


>gi|55741870 zinc finger protein 483 isoform b [Homo sapiens]
          Length = 256

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 333 WEKCPESHVPVSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMV 386
           WE C +   P     H  +  L+LL F     +L G +  W+    PE +EE+V
Sbjct: 74  WELCNQWLRP---DIHTKEQILELLVFEQFLTILPGEIRIWVKSQHPESSEEVV 124


>gi|190014620 zinc finger protein 483 isoform a [Homo sapiens]
          Length = 744

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 333 WEKCPESHVPVSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMV 386
           WE C +   P     H  +  L+LL F     +L G +  W+    PE +EE+V
Sbjct: 74  WELCNQWLRP---DIHTKEQILELLVFEQFLTILPGEIRIWVKSQHPESSEEVV 124


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,380,932
Number of Sequences: 37866
Number of extensions: 833761
Number of successful extensions: 1617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1613
Number of HSP's gapped (non-prelim): 7
length of query: 463
length of database: 18,247,518
effective HSP length: 106
effective length of query: 357
effective length of database: 14,233,722
effective search space: 5081438754
effective search space used: 5081438754
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.