Guide to the Human Genome
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Name: CKLF Sequence: fasta or formatted (113aa) NCBI GI: 93141024
Description:

chemokine-like factor isoform e

Not currently referenced in the text

Other entries for this name:
alt prot {99aa} chemokine-like factor isoform b
alt prot {120aa} chemokine-like factor isoform d
alt prot {67aa} chemokine-like factor isoform c
alt prot {152aa} chemokine-like factor isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          4           1
 C cysteine            0.9          1           1
 D aspartate           2.7          3           1
 E glutamate           2.7          3           1
 F phenylalanine       8.8         10           2
 G glycine             4.4          5           3
 H histidine           1.8          2           1
 I isoleucine          9.7         11           2
 K lysine              4.4          5           1
 L leucine            15.9         18           2
 M methionine          4.4          5           1
 N asparagine          1.8          2           1
 P proline             5.3          6           1
 Q glutamine           1.8          2           1
 R arginine            3.5          4           1
 S serine              3.5          4           1
 T threonine           9.7         11           3
 V valine             11.5         13           1
 W tryptophan          1.8          2           1
 Y tyrosine            1.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine-like factor isoform e 
CKLF                  0.995   chemokine-like factor isoform a 
CKLF                  0.700   chemokine-like factor isoform d 
CKLF                  0.355   chemokine-like factor isoform b 
CMTM1                 0.345   chemokine-like factor superfamily 1 isoform 13 [Hom...
CMTM1                 0.335   chemokine-like factor superfamily 1 isoform 14 [Hom...
CMTM1                 0.280   chemokine-like factor superfamily 1 isoform 1 
CMTM1                 0.275   chemokine-like factor superfamily 1 isoform 2 
CKLF                  0.175   chemokine-like factor isoform c 
CMTM7                 0.100   CKLF-like MARVEL transmembrane domain containing 7 i...
CMTM2                 0.085   chemokine-like factor superfamily 2 
CMTM3                 0.060   chemokine-like factor superfamily 3 
CMTM3                 0.060   chemokine-like factor superfamily 3 
CMTM3                 0.060   chemokine-like factor superfamily 3 
CMTM3                 0.060   chemokine-like factor superfamily 3 
CMTM5                 0.050   chemokine-like factor superfamily 5 isoform a 
KCNH8                 0.035   potassium voltage-gated channel, subfamily H, member...
CMTM7                 0.030   CKLF-like MARVEL transmembrane domain containing 7 i...
LOC100289996          0.025   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.025   PREDICTED: hypothetical protein XP_002343076 
CMTM1                 0.025   chemokine-like factor superfamily 1 isoform 4 
KCNH3                 0.025   potassium voltage-gated channel, subfamily H (eag-re...
KCNH4                 0.020   potassium voltage-gated channel, subfamily H, member ...
TMPPE                 0.020   transmembrane protein with metallophosphoesterase d...
CMTM1                 0.015   chemokine-like factor superfamily 1 isoform 3 
CMTM1                 0.015   chemokine-like factor superfamily 1 isoform 5 
GJB2                  0.015   gap junction protein beta 2 
SLC24A2               0.015   solute carrier family 24 (sodium/potassium/calcium ex...
TMEM185A              0.010   transmembrane protein 185A 
SLC28A1               0.010   solute carrier family 28, member 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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