Search of human proteins with 9256616

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|9256616 protocadherin beta 4 precursor [Homo sapiens]
         (795 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9256616 protocadherin beta 4 precursor [Homo sapiens]             1564   0.0  
gi|7661662 protocadherin beta 5 precursor [Homo sapiens]             1216   0.0  
gi|9256618 protocadherin beta 6 precursor [Homo sapiens]             1204   0.0  
gi|9256614 protocadherin beta 3 precursor [Homo sapiens]             1198   0.0  
gi|9256610 protocadherin beta 15 precursor [Homo sapiens]            1197   0.0  
gi|9256608 protocadherin beta 14 precursor [Homo sapiens]            1189   0.0  
gi|9256612 protocadherin beta 2 precursor [Homo sapiens]             1170   0.0  
gi|9256606 protocadherin beta 12 precursor [Homo sapiens]            1168   0.0  
gi|14195605 protocadherin beta 16 precursor [Homo sapiens]           1165   0.0  
gi|11036656 protocadherin beta 7 precursor [Homo sapiens]            1161   0.0  
gi|9256604 protocadherin beta 11 precursor [Homo sapiens]            1157   0.0  
gi|11276081 protocadherin beta 8 precursor [Homo sapiens]            1153   0.0  
gi|14195616 protocadherin beta 9 precursor [Homo sapiens]            1142   0.0  
gi|11036654 protocadherin beta 13 precursor [Homo sapiens]           1139   0.0  
gi|9256602 protocadherin beta 10 precursor [Homo sapiens]            1137   0.0  
gi|14195607 protocadherin beta 1 precursor [Homo sapiens]             779   0.0  
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs...   633   0.0  
gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precurs...   633   0.0  
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs...   630   e-180
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs...   630   e-180
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs...   630   e-180
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs...   630   e-180
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs...   630   e-180
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs...   630   e-180
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs...   629   e-180
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs...   629   e-180
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs...   627   e-179
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs...   627   e-179
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs...   627   e-179
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs...   627   e-179

>gi|9256616 protocadherin beta 4 precursor [Homo sapiens]
          Length = 795

 Score = 1564 bits (4050), Expect = 0.0
 Identities = 795/795 (100%), Positives = 795/795 (100%)

Query: 1   MKKLGRIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELAS 60
           MKKLGRIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELAS
Sbjct: 1   MKKLGRIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELAS 60

Query: 61  RSARVLSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGEL 120
           RSARVLSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGEL
Sbjct: 61  RSARVLSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGEL 120

Query: 121 LIQDINDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHIL 180
           LIQDINDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHIL
Sbjct: 121 LIQDINDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHIL 180

Query: 181 TRNHSEGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPE 240
           TRNHSEGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPE
Sbjct: 181 TRNHSEGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPE 240

Query: 241 FVHTPYGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEI 300
           FVHTPYGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEI
Sbjct: 241 FVHTPYGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEI 300

Query: 301 LLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAP 360
           LLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAP
Sbjct: 301 LLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAP 360

Query: 361 ETVVSIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITI 420
           ETVVSIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITI
Sbjct: 361 ETVVSIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITI 420

Query: 421 AVTDLGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSG 480
           AVTDLGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSG
Sbjct: 421 AVTDLGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSG 480

Query: 481 TNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPAL 540
           TNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPAL
Sbjct: 481 TNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPAL 540

Query: 541 SSEALVRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAW 600
           SSEALVRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAW
Sbjct: 541 SSEALVRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAW 600

Query: 601 LSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVL 660
           LSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVL
Sbjct: 601 LSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVL 660

Query: 661 LVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAS 720
           LVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAS
Sbjct: 661 LVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAS 720

Query: 721 VGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGR 780
           VGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGR
Sbjct: 721 VGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGR 780

Query: 781 EVKENPKFRNSLVFS 795
           EVKENPKFRNSLVFS
Sbjct: 781 EVKENPKFRNSLVFS 795


>gi|7661662 protocadherin beta 5 precursor [Homo sapiens]
          Length = 795

 Score = 1216 bits (3147), Expect = 0.0
 Identities = 615/788 (78%), Positives = 686/788 (87%), Gaps = 1/788 (0%)

Query: 4   LGRIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSA 63
           L +    RQV+   +++ L +   E +RYS+ EETESG  VA+LAKDLGLG+GELA+R A
Sbjct: 5   LAKTPQKRQVMFLAILLLLWEAGSEAVRYSIPEETESGYSVANLAKDLGLGVGELATRGA 64

Query: 64  RVLSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQ 123
           R+    +K+ LQLD +TG+LLL EKLDRE +CG  EPC+LHFQ+ LE PVQFFQ +L + 
Sbjct: 65  RMHYKGNKELLQLDIKTGNLLLYEKLDREVMCGATEPCILHFQLLLENPVQFFQTDLQLT 124

Query: 124 DINDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRN 183
           DINDH+P FPE+E+LLKI E++QPGT+FPL IA+D D+GSN +Q YTISPNSHFH+ T N
Sbjct: 125 DINDHAPEFPEKEMLLKIPESTQPGTVFPLKIAQDFDIGSNTVQNYTISPNSHFHVATHN 184

Query: 184 HSEGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVH 243
             +G+KYP+LV DK LDREE+PE SLTL ALDGG+PPRSGT  +RI+++D NDNAPEF+ 
Sbjct: 185 RGDGRKYPELVLDKALDREERPELSLTLTALDGGAPPRSGTTTIRIVVLDNNDNAPEFLQ 244

Query: 244 TPYGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLK 303
           + Y VQV ENSPL+S +V V ARD+DAG +GSV+Y LFQ  DE+ Q F I+E T EI LK
Sbjct: 245 SFYEVQVPENSPLNSLVVVVSARDLDAGAYGSVAYALFQG-DEVTQPFVIDEKTAEIRLK 303

Query: 304 KKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETV 363
           + LDFE    Y+VEI ATDGGGLSGK TV IEVVDVNDN PEL +S+L+S  PENAPETV
Sbjct: 304 RALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENAPETV 363

Query: 364 VSIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVT 423
           V++F + D DSG+NG+MICSI ++LPF+LKPTLKNFYTLVT+R LDRE+ AEYNITI VT
Sbjct: 364 VAVFSVSDPDSGDNGRMICSIQNDLPFLLKPTLKNFYTLVTQRTLDRESQAEYNITITVT 423

Query: 424 DLGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNA 483
           D+GTPRLKT+ NITV VSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNA
Sbjct: 424 DMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNA 483

Query: 484 QVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSE 543
           QVTYSLLPPQ+PHL LASLVSINADNGHLFALRSLDYEALQAFEFRVGA+DRGSPALSSE
Sbjct: 484 QVTYSLLPPQNPHLRLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSE 543

Query: 544 ALVRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSY 603
           ALVRVLVLD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSY
Sbjct: 544 ALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSY 603

Query: 604 QLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVD 663
           QLLKATEPGLF +WAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVD
Sbjct: 604 QLLKATEPGLFSMWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVD 663

Query: 664 GFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGR 723
           GFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGR
Sbjct: 664 GFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGR 723

Query: 724 CSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVK 783
           CSVPEGPFPGHLVDVSGTGTLSQSY YEVCLTGDSG GEFKFLKPI PNLL Q  G E+ 
Sbjct: 724 CSVPEGPFPGHLVDVSGTGTLSQSYHYEVCLTGDSGAGEFKFLKPIIPNLLPQGAGEEIG 783

Query: 784 ENPKFRNS 791
           +   FRNS
Sbjct: 784 KTAAFRNS 791


>gi|9256618 protocadherin beta 6 precursor [Homo sapiens]
          Length = 794

 Score = 1204 bits (3116), Expect = 0.0
 Identities = 610/785 (77%), Positives = 677/785 (86%), Gaps = 1/785 (0%)

Query: 11  RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
           RQV  FIL++   +V  E I+YSVLEETESG+FVA+L KDLGL +GELASR ARV+   +
Sbjct: 11  RQVAFFILLMLWGEVGSESIQYSVLEETESGTFVANLTKDLGLRVGELASRGARVVFKGN 70

Query: 71  KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
           +Q LQ D QT DLLL EKLDREELCG  EPCVL FQV LE P+QFFQ  L ++DINDH+P
Sbjct: 71  RQHLQFDPQTHDLLLNEKLDREELCGSTEPCVLPFQVLLENPLQFFQASLRVRDINDHAP 130

Query: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
            FP RE+LLKI E + PG +FPL +A DLD GSNGLQ+YTIS N HFH+LTRN SEG+K+
Sbjct: 131 EFPAREMLLKISEITMPGKIFPLKMAHDLDTGSNGLQRYTISSNPHFHVLTRNRSEGRKF 190

Query: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
           P+LV DKPLDREEQP+  LTL+ALDGGSPPRSGT  ++I ++DINDN PEF    Y  QV
Sbjct: 191 PELVLDKPLDREEQPQLRLTLIALDGGSPPRSGTSEIQIQVLDINDNVPEFAQELYEAQV 250

Query: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
            EN+PL S ++ V ARD+DAG+FG VSY LFQ  D++ Q F IN +TGEI L+K LDFE+
Sbjct: 251 PENNPLGSLVITVSARDLDAGSFGKVSYALFQV-DDVNQPFEINAITGEIRLRKALDFEE 309

Query: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRIR 370
           I+SY V++EATDGGGLSGK ++V+ V+DVNDN PEL +S   S IPEN PE  V++F + 
Sbjct: 310 IQSYDVDVEATDGGGLSGKCSLVVRVLDVNDNAPELTMSFFISLIPENLPEITVAVFSVS 369

Query: 371 DRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRL 430
           D DSG N ++ICSI +NLPF+L+P+++NFYTLVTE  LDRE+ AEYNITI VTDLGTPRL
Sbjct: 370 DADSGHNQQVICSIENNLPFLLRPSVENFYTLVTEGALDRESRAEYNITITVTDLGTPRL 429

Query: 431 KTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 490
           KTQQ+ITVQVSDVNDN PAFTQTSYTLFVRENNSPALHIGSVSATDRDSG NAQVTYSLL
Sbjct: 430 KTQQSITVQVSDVNDNVPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGINAQVTYSLL 489

Query: 491 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLV 550
           PPQDPHLPL+SLVSINADNGHLFALRSLDYEALQ+FEFRVGA+DRGSPALSSEALVR+LV
Sbjct: 490 PPQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATDRGSPALSSEALVRLLV 549

Query: 551 LDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
           LD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 550 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 609

Query: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
            GLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL
Sbjct: 610 LGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 669

Query: 671 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 730
           PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGR SVPEGP
Sbjct: 670 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRYSVPEGP 729

Query: 731 FPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKFRN 790
           FPGHLVDVSGTGTLSQSYQY+VCLTG S T EFKFLKPI PN   Q T RE++E P  RN
Sbjct: 730 FPGHLVDVSGTGTLSQSYQYKVCLTGGSETNEFKFLKPIMPNFPPQGTEREMEETPTSRN 789

Query: 791 SLVFS 795
           S  FS
Sbjct: 790 SFPFS 794


>gi|9256614 protocadherin beta 3 precursor [Homo sapiens]
          Length = 796

 Score = 1198 bits (3099), Expect = 0.0
 Identities = 601/785 (76%), Positives = 672/785 (85%)

Query: 11  RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
           RQVL   + +  S    E  RYSV EE E G  +A+LAKDLGL + ELA+R A+V+S  +
Sbjct: 12  RQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGN 71

Query: 71  KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
           KQ  QL  QTGDLLL EKLDREELCGP EPC+LHFQ+ L+ P+QF   EL I D+NDHSP
Sbjct: 72  KQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSP 131

Query: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
           +F E E+ LKILE++ PGT+ PL  AEDLDVG N LQ YTI+PNSHFH+LTR+  +G+KY
Sbjct: 132 VFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKY 191

Query: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
           P+LV DK LDREEQPE SLTL ALDGGSPPRSGT  + I ++DINDNAPEF    Y V V
Sbjct: 192 PELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAV 251

Query: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
           LEN+P++S IV V A D+D G+FG++SY  F AS+EI++TF +N +TG++ L K L+FE 
Sbjct: 252 LENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEA 311

Query: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRIR 370
           I SY V+IEA DGGGLSGK TV+++VVDVNDNPPEL +SS+ S IPEN+ ETV+++F + 
Sbjct: 312 INSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGETVLAVFSVS 371

Query: 371 DRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRL 430
           D DSG+NG+++CSI +NLPF LKP+++NFYTLV+E  LDRET +EYNITI +TDLGTPRL
Sbjct: 372 DLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRL 431

Query: 431 KTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 490
           KT+ NITV VSDVNDNAPAFTQ SYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL
Sbjct: 432 KTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 491

Query: 491 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLV 550
           PPQDPHLPL+SLVSINADNGHLFALRSLDYEALQAFEFRVGA+DRGSPALSSEALVRVLV
Sbjct: 492 PPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLV 551

Query: 551 LDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
           LD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 552 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611

Query: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
           PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL
Sbjct: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671

Query: 671 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 730
           PLPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP
Sbjct: 672 PLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 731

Query: 731 FPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKFRN 790
           FPG +VDVSGTGTLSQSYQYEVCLTG SGT EFKFLKPI PN + Q   R  + NP FR 
Sbjct: 732 FPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPSFRK 791

Query: 791 SLVFS 795
           S  FS
Sbjct: 792 SFEFS 796


>gi|9256610 protocadherin beta 15 precursor [Homo sapiens]
          Length = 787

 Score = 1197 bits (3097), Expect = 0.0
 Identities = 602/776 (77%), Positives = 674/776 (86%)

Query: 6   RIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARV 65
           R    RQVL  +L++ ++    EP RYSV+EETE GSFVA+LA DLGLG+GELA R ARV
Sbjct: 7   RFPEQRQVLILLLLLEVTLAGWEPRRYSVMEETERGSFVANLANDLGLGVGELAERGARV 66

Query: 66  LSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDI 125
           +S+D++Q LQLD QTG L+L EKLDRE+LCGP EPC++HFQV L+ P++ F+ ELL+ DI
Sbjct: 67  VSEDNEQGLQLDLQTGQLILNEKLDREKLCGPTEPCIMHFQVLLKKPLEVFRAELLVTDI 126

Query: 126 NDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHS 185
           NDHSP FPERE+ LKI E S  GT+FPL  A DLDVGSN +Q Y ISPNSHFH+ TR   
Sbjct: 127 NDHSPEFPEREMTLKIPETSSLGTVFPLKKARDLDVGSNNVQNYNISPNSHFHVSTRTRG 186

Query: 186 EGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTP 245
           +G+KYP+LV D  LDREEQ E  LTL A+DGGSPPRSGTV + IL++D NDNAPEFV   
Sbjct: 187 DGRKYPELVLDTELDREEQAELRLTLTAVDGGSPPRSGTVQILILVLDANDNAPEFVQAL 246

Query: 246 YGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKK 305
           Y VQV ENSP+ S +V+V ARD+D G  G +SY L+ +S EI + F ++ ++GEI L KK
Sbjct: 247 YEVQVPENSPVGSLVVKVSARDLDTGTNGEISYSLYYSSQEIDKPFELSSLSGEIRLIKK 306

Query: 306 LDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVS 365
           LDFE + SY ++IEA+DGGGLSGK +V ++V+DVNDN PEL ISSLTS IPEN+PET V+
Sbjct: 307 LDFETMSSYDLDIEASDGGGLSGKCSVSVKVLDVNDNFPELSISSLTSPIPENSPETEVA 366

Query: 366 IFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDL 425
           +FRIRDRDSGENGKMICSI D++PF LKP+++NFY LVTE  LDRET AEYNITI +TDL
Sbjct: 367 LFRIRDRDSGENGKMICSIQDDVPFKLKPSVENFYRLVTEGALDRETRAEYNITITITDL 426

Query: 426 GTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 485
           GTPRLKT+Q+ITV VSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV
Sbjct: 427 GTPRLKTEQSITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 486

Query: 486 TYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEAL 545
           TYSLLPP+DPHLPL SLVSIN DNGHLFAL+SLDYEALQAFEFRVGA+DRG PALSSEAL
Sbjct: 487 TYSLLPPRDPHLPLTSLVSINTDNGHLFALQSLDYEALQAFEFRVGATDRGFPALSSEAL 546

Query: 546 VRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 605
           VRVLVLD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL
Sbjct: 547 VRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 606

Query: 606 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 665
           LKATEPGLFGVWAHNGEVRTARLLSERD AKHRLVVLVKDNGEPPRSATATL VLLVDGF
Sbjct: 607 LKATEPGLFGVWAHNGEVRTARLLSERDVAKHRLVVLVKDNGEPPRSATATLQVLLVDGF 666

Query: 666 SQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS 725
           SQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSV LFVAVRLCRRSRAASVGRCS
Sbjct: 667 SQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVFLFVAVRLCRRSRAASVGRCS 726

Query: 726 VPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGRE 781
           VPEGPFPGHLVDVSGTGTLSQSYQYEVCLTG S + +FKFLKPIFPN++ QD+ R+
Sbjct: 727 VPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSESNDFKFLKPIFPNIVSQDSRRK 782


>gi|9256608 protocadherin beta 14 precursor [Homo sapiens]
          Length = 798

 Score = 1189 bits (3075), Expect = 0.0
 Identities = 598/781 (76%), Positives = 675/781 (86%)

Query: 11  RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
           RQVL F++++ LS+   E   YSV EETE GSFVA+LA+DLGLG+ EL+SR ARV+SDD+
Sbjct: 12  RQVLIFLVLLGLSRAGTESAHYSVAEETEIGSFVANLARDLGLGVEELSSREARVVSDDN 71

Query: 71  KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
           K+ L LD  TG+LLL EKLDR+ELCG  EPCVLHFQV LE P+QFF+ EL ++DINDHSP
Sbjct: 72  KKYLHLDLLTGNLLLNEKLDRDELCGSTEPCVLHFQVVLENPLQFFRFELCVKDINDHSP 131

Query: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
            F ++E+L+KI E +  G  F +  A+DLDVGSN LQ YTISPNSHF+I   + S+ K Y
Sbjct: 132 TFLDKEILIKISEGTTVGATFLMESAQDLDVGSNSLQNYTISPNSHFYIKIPDSSDRKIY 191

Query: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
           P+LV D+ LD E++ E  LTL A+DGGSPP+SGT +V I ++DINDNAPEF  + Y VQV
Sbjct: 192 PELVLDRALDYEQEAELRLTLTAVDGGSPPKSGTTLVLIKVLDINDNAPEFPQSLYEVQV 251

Query: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
            E+ PL S I  + A+D+DAGN+G +SY  F AS++I++TF IN ++GE+ L+  LDFE 
Sbjct: 252 PEDRPLGSWIATISAKDLDAGNYGKISYTFFHASEDIRKTFEINPISGEVNLRSPLDFEV 311

Query: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRIR 370
           I+SY + I+ATDGGGLSGK T++++V+D+NDNPPE+ ISS+T  IPENA ET+V++F I 
Sbjct: 312 IQSYTINIQATDGGGLSGKCTLLVKVMDINDNPPEVTISSITKRIPENASETLVALFSIL 371

Query: 371 DRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRL 430
           D+DSG+NG+MICSI DNLPF LKPT KNF+TLV+E+ LDRE+ AEYNITI VTDLGTPRL
Sbjct: 372 DQDSGDNGRMICSIQDNLPFFLKPTFKNFFTLVSEKALDRESQAEYNITITVTDLGTPRL 431

Query: 431 KTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 490
           KT+ NITV +SDVNDNAP FTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV YSLL
Sbjct: 432 KTEYNITVLLSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVNYSLL 491

Query: 491 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLV 550
           PPQD HLPLASLVSINADNGHLFALRSLDYEALQ FEFRVGA+DRGSPALSSEALVRVLV
Sbjct: 492 PPQDRHLPLASLVSINADNGHLFALRSLDYEALQEFEFRVGATDRGSPALSSEALVRVLV 551

Query: 551 LDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
           LD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 552 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611

Query: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
           PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL
Sbjct: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671

Query: 671 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 730
           PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP
Sbjct: 672 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 731

Query: 731 FPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKFRN 790
           FPGHLVDVSGTGTLSQSYQYEVCLTG SGT EFKFLKPI PN  V DTGR + E   FRN
Sbjct: 732 FPGHLVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFQVHDTGRNMGEIENFRN 791

Query: 791 S 791
           S
Sbjct: 792 S 792


>gi|9256612 protocadherin beta 2 precursor [Homo sapiens]
          Length = 798

 Score = 1170 bits (3028), Expect = 0.0
 Identities = 590/790 (74%), Positives = 666/790 (84%)

Query: 6   RIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARV 65
           R+   RQVL F +++ ++Q   +P  YSV EETESGSFVA+L KDLGL IGELA R ARV
Sbjct: 9   RVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARV 68

Query: 66  LSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDI 125
           +S   K  LQ DRQTGDLLL EKLDREELCGP EPCVL FQV LE P+QFFQ EL I+D+
Sbjct: 69  VSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDV 128

Query: 126 NDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHS 185
           NDHSP+F ++E+LLKI E+  PGT F +  A+DLDVG+N LQ YTISPN HFH+  ++  
Sbjct: 129 NDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSL 188

Query: 186 EGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTP 245
           +G   P LV ++ LDREEQPE  LTL ALDGGSPPRSGT +VRI ++DINDN PEF    
Sbjct: 189 DGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLL 248

Query: 246 YGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKK 305
           Y VQ+ E+SP+ S +  V ARD+D G  G +SY   QAS++I++TF ++  +GE+LL++K
Sbjct: 249 YEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQK 308

Query: 306 LDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVS 365
           LDFE I++Y V I+ATDGGGLSG   V ++V+D+NDNPPEL +S+L + IPEN  +T+++
Sbjct: 309 LDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIA 368

Query: 366 IFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDL 425
           +F + D DSG+NG+M+CSI D+LPF LKP+++NFYTLV    LDRET +EYNITI VTD 
Sbjct: 369 VFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDF 428

Query: 426 GTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 485
           GTPRLKT+ NITV VSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV
Sbjct: 429 GTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 488

Query: 486 TYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEAL 545
           TYSLLPPQDPHLPLASLVSINADNGHLFAL+SLDYEALQAFEFRVGA+DRGSPALSSEAL
Sbjct: 489 TYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEAL 548

Query: 546 VRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 605
           VRVLVLD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL
Sbjct: 549 VRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 608

Query: 606 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 665
           LKATEPGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGF
Sbjct: 609 LKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGF 668

Query: 666 SQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS 725
           SQPYL LPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS
Sbjct: 669 SQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS 728

Query: 726 VPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKEN 785
           VPEGPFPG +VDVSGTGTLSQSYQYEVCLTG SGT EFKFLKPI PN + Q   R  + N
Sbjct: 729 VPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEAN 788

Query: 786 PKFRNSLVFS 795
           P FR S  F+
Sbjct: 789 PSFRKSFEFT 798


>gi|9256606 protocadherin beta 12 precursor [Homo sapiens]
          Length = 795

 Score = 1168 bits (3022), Expect = 0.0
 Identities = 588/784 (75%), Positives = 670/784 (85%)

Query: 11  RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
           RQVL F +++ +SQ   E   + V+EE +SGSFV +LAK LGL + EL+SR ARV+S+D+
Sbjct: 12  RQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71

Query: 71  KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
           K+ LQLD  TGDLLLRE LDREELCG  EPCVL+FQV ++ P QF Q EL ++DINDHSP
Sbjct: 72  KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131

Query: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
           +F E+E+LL+I ENS  G +F L  A+DLDVG N ++ YTI+PNSHFH+  R + + +KY
Sbjct: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191

Query: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
           P+LV DK LD EE+PE S  L ALDGGSPPRSGT +VR++++DINDN+PEF    Y V++
Sbjct: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251

Query: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
           LENS L S +V V A D+D+G    +SY    AS++I++TF IN+ +G+I L   LDFE 
Sbjct: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311

Query: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRIR 370
           I+SY + I+ATDGGGL GK TV I+V+DVNDN PE+ +SS+TS IPEN PETVV +FRIR
Sbjct: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPETVVMVFRIR 371

Query: 371 DRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRL 430
           DRDSG+NGKM+CSIP+++PF+LK ++ N+YTL TERPLDRE+ AEYNITI VTDLGTPRL
Sbjct: 372 DRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRL 431

Query: 431 KTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 490
           KT+ NITV VSDVNDNAPAFTQTSY LFVRENNSPALHIGS+SATDRDSGTNAQV YSLL
Sbjct: 432 KTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLL 491

Query: 491 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLV 550
           P QDPHLPLASLVSINADNGHLFALRSLDYEALQ F+FRVGA+D GSPALSSEALVRVLV
Sbjct: 492 PSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLV 551

Query: 551 LDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
           LD NDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 552 LDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611

Query: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
           PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL
Sbjct: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671

Query: 671 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 730
           PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA VGRCSVPEGP
Sbjct: 672 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVPEGP 731

Query: 731 FPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKFRN 790
           FPGHLVDVSGTGTLSQSY YEVC+TG S + +FKFLKPI PN L Q TG EV+ENP F+N
Sbjct: 732 FPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEENPPFQN 791

Query: 791 SLVF 794
           +L F
Sbjct: 792 NLGF 795


>gi|14195605 protocadherin beta 16 precursor [Homo sapiens]
          Length = 776

 Score = 1165 bits (3013), Expect = 0.0
 Identities = 583/762 (76%), Positives = 656/762 (86%)

Query: 11  RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
           RQVL F +++ LS    E   YSV+EETE GSFVA+L KDLGLG+ E+++R AR++S  +
Sbjct: 12  RQVLVFFVLLSLSGAGAELGSYSVVEETERGSFVANLGKDLGLGLTEMSTRKARIISQGN 71

Query: 71  KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
           KQ LQL  QTGDLL+ EKLDREELCGP EPC+LHFQV +E P++ FQ EL + DINDHSP
Sbjct: 72  KQHLQLKAQTGDLLINEKLDREELCGPTEPCILHFQVLMENPLEIFQAELRVIDINDHSP 131

Query: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
           +F E+E++LKI ENS  GT FPL  A DLDVGSN +Q Y ISP+SHF +L     +G+KY
Sbjct: 132 MFTEKEMILKIPENSPLGTEFPLNHALDLDVGSNNVQNYKISPSSHFRVLIHEFRDGRKY 191

Query: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
           P+LV DK LDREE+P+  LTL ALDGGSPPRSGT  VRI ++DINDNAPEF    Y VQ+
Sbjct: 192 PELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQI 251

Query: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
            ENSPL S +  V ARD+D G  G +SY LFQ S++I +T  +N +TGE+ L+K++DFE 
Sbjct: 252 PENSPLGSLVATVSARDLDGGANGKISYTLFQPSEDISKTLEVNPMTGEVRLRKQVDFEM 311

Query: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRIR 370
           + SY V I+ATDGGGLSGK T++++VVDVNDNPP++ +S+LTS IPEN+PE VV++F + 
Sbjct: 312 VTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALTSPIPENSPEIVVAVFSVS 371

Query: 371 DRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRL 430
           D DSG NGK I SI ++LPF+LKP++KNFYTLVTER LDRE  AEYNIT+ VTD+GTPRL
Sbjct: 372 DPDSGNNGKTISSIQEDLPFLLKPSVKNFYTLVTERALDREARAEYNITLTVTDMGTPRL 431

Query: 431 KTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 490
           KT+ NITVQ+SDVNDNAP FTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL
Sbjct: 432 KTEHNITVQISDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 491

Query: 491 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLV 550
           PPQDPHLPLASLVSINADNGHLFALRSLDYEAL+ FEFRV A+DRGSPALSSEALVRVLV
Sbjct: 492 PPQDPHLPLASLVSINADNGHLFALRSLDYEALREFEFRVSATDRGSPALSSEALVRVLV 551

Query: 551 LDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
           LD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 552 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611

Query: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
           PGLFGVWAHNGEVRTARLLSERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGFSQP+L
Sbjct: 612 PGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPFL 671

Query: 671 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 730
           PLPEAAP Q QA+SLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS+PEGP
Sbjct: 672 PLPEAAPGQTQANSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSMPEGP 731

Query: 731 FPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPN 772
           FPG LVDVSGTGTLSQSYQYEVCLTG S T EFKFLKPI PN
Sbjct: 732 FPGRLVDVSGTGTLSQSYQYEVCLTGGSETSEFKFLKPIIPN 773


>gi|11036656 protocadherin beta 7 precursor [Homo sapiens]
          Length = 793

 Score = 1161 bits (3003), Expect = 0.0
 Identities = 590/792 (74%), Positives = 669/792 (84%), Gaps = 2/792 (0%)

Query: 3   KLGRIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRS 62
           ++ R    RQVL   + + +S    EP+RY V EETE G+F+ +LAKDLGLG+GEL +R 
Sbjct: 4   RVERAVQKRQVLFLCVFLGMSWAGAEPLRYFVAEETERGTFLTNLAKDLGLGVGELRARG 63

Query: 63  ARVLSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLI 122
            R++SD + Q L L   TGDLLL EKLDREELCGP EPCVL FQ+ LE P Q F+ EL +
Sbjct: 64  TRIVSDQNMQILLLSSLTGDLLLNEKLDREELCGPREPCVLPFQLLLEKPFQIFRAELWV 123

Query: 123 QDINDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTR 182
           +DINDH+P+F +RE+ LKILE++ PG  F L  A+D DVG+N L  YTISPN++FHI   
Sbjct: 124 RDINDHAPVFLDREISLKILESTTPGAAFLLESAQDSDVGTNSLSNYTISPNAYFHINVH 183

Query: 183 NHSEGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFV 242
           +  EG  YP+LV ++ LDREE PEFSLTL ALDGGSPPRSGT +VRIL++D+NDNAP+FV
Sbjct: 184 DSGEGNIYPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFV 243

Query: 243 HTPYGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILL 302
            + Y VQV ENSP+ S +V V ARD+D G+ G ++Y    A++ I +TF IN  +G + L
Sbjct: 244 RSLYKVQVPENSPVGSMVVSVSARDLDTGSNGEIAYAFSYATERILKTFQINPTSGSLHL 303

Query: 303 KKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPET 362
           K +LD+E I++Y + I+A DGGGLSGK TVV++V D+NDN PEL++SSLTS I EN+PET
Sbjct: 304 KAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLTSPIAENSPET 363

Query: 363 VVSIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAV 422
           VV++FRIRDRDSG NGK +CSI D++PFILKP+++NFYTLVTE+PLDRE + EYNITI V
Sbjct: 364 VVAVFRIRDRDSGNNGKTVCSIQDDVPFILKPSVENFYTLVTEKPLDRERNTEYNITITV 423

Query: 423 TDLGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTN 482
           TDLGTPRLKT+ NITV VSDVNDNAPAFTQTSYTLFVRENNSPAL IGSVSATDRDSGTN
Sbjct: 424 TDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALPIGSVSATDRDSGTN 483

Query: 483 AQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSS 542
           AQV YSLLP QDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGA+DRGSPALSS
Sbjct: 484 AQVIYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSS 543

Query: 543 EALVRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLS 602
           EALVRVLVLD NDNSPFVLYPLQN SAPCTE +PRAAEPGYLVTKVVAVDGDSGQNAWLS
Sbjct: 544 EALVRVLVLDANDNSPFVLYPLQNSSAPCTEPLPRAAEPGYLVTKVVAVDGDSGQNAWLS 603

Query: 603 YQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLV 662
           YQLLKATEPGLFGVWAHNGEVRTARLLSERDAAK RLVVLVKDNGEPPRSATATLHVLLV
Sbjct: 604 YQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHVLLV 663

Query: 663 DGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVG 722
           DGFSQPYL LPEAAP   QA+SLTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAA VG
Sbjct: 664 DGFSQPYLRLPEAAP--DQANSLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAAPVG 721

Query: 723 RCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREV 782
           RCSVPEGPFP HLVD+SGTGTLSQSYQYEVCLTG SGT EFKFLKPI PNLL Q TGREV
Sbjct: 722 RCSVPEGPFPRHLVDLSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNLLPQSTGREV 781

Query: 783 KENPKFRNSLVF 794
           +EN  F+N+L F
Sbjct: 782 EENRPFQNNLGF 793


>gi|9256604 protocadherin beta 11 precursor [Homo sapiens]
          Length = 797

 Score = 1157 bits (2992), Expect = 0.0
 Identities = 586/785 (74%), Positives = 664/785 (84%)

Query: 11  RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
           RQVL   +++ +SQ   E   +SV EE +SGSFV +LAKDLGL + EL+SR ARV+S+D 
Sbjct: 12  RQVLLLFVLLGMSQAGSETWSFSVAEEMQSGSFVGNLAKDLGLKVRELSSRGARVVSNDK 71

Query: 71  KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
           KQRLQLD  TGDLLL E LDREELCG IEPCVLH QV ++ P QF Q EL ++DINDHSP
Sbjct: 72  KQRLQLDINTGDLLLSETLDREELCGSIEPCVLHLQVLMQNPTQFLQIELQVRDINDHSP 131

Query: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
           IF E+++LL+I ENS  G +F L  A+DLDVG N ++ YTISPNSHFHI  R   + +KY
Sbjct: 132 IFSEKQMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTISPNSHFHIKMRVIPDNRKY 191

Query: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
           P+LV DK LD EE PE S  L ALDGGSPPRSGT +VR++++DINDN+PEF    Y V++
Sbjct: 192 PELVLDKALDYEELPELSFILSALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251

Query: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
            ENS L S I+ V A D+D+G  G + Y    AS++I++TF IN+ +GEI L+  LDFE 
Sbjct: 252 RENSILGSLILIVSAWDLDSGTNGEICYTFSHASEDIRKTFEINQKSGEITLRAPLDFET 311

Query: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRIR 370
           I+SY + I+ATDGGGL GK TV+I V+DVNDN PE+ +SS+TS IPEN PETVV +F I+
Sbjct: 312 IESYSIIIQATDGGGLFGKSTVIIHVIDVNDNAPEITVSSITSPIPENTPETVVMVFSIQ 371

Query: 371 DRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRL 430
           D DSG+NG+++CSIP++LPF+LK +++N+YTL TERPLDRE++AEYNITI VTDLG PRL
Sbjct: 372 DIDSGDNGRIVCSIPEDLPFVLKSSVENYYTLETERPLDRESTAEYNITITVTDLGIPRL 431

Query: 431 KTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 490
           KT+ N TV VSDVNDNAP FTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV YSLL
Sbjct: 432 KTEHNTTVLVSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVNYSLL 491

Query: 491 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLV 550
           PPQD HLPLASLVSIN DNGHLFALRSLDYEALQAF+FRVGA+DRGSPALSSEALVRVLV
Sbjct: 492 PPQDLHLPLASLVSINTDNGHLFALRSLDYEALQAFDFRVGATDRGSPALSSEALVRVLV 551

Query: 551 LDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
           LD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 552 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611

Query: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
           PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATL VLLVDGFSQPYL
Sbjct: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLQVLLVDGFSQPYL 671

Query: 671 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 730
           PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVG CSVP+GP
Sbjct: 672 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGSCSVPKGP 731

Query: 731 FPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKFRN 790
           FPGHLVDVSGTGTLSQSYQYEVCLTG S T EFKFLKP+ PN+  +  G+  +EN  FRN
Sbjct: 732 FPGHLVDVSGTGTLSQSYQYEVCLTGGSETNEFKFLKPVIPNIQAKGLGKNSEENSTFRN 791

Query: 791 SLVFS 795
           S  F+
Sbjct: 792 SFGFN 796


>gi|11276081 protocadherin beta 8 precursor [Homo sapiens]
          Length = 801

 Score = 1153 bits (2982), Expect = 0.0
 Identities = 584/786 (74%), Positives = 659/786 (83%), Gaps = 1/786 (0%)

Query: 11  RQVLAFILMVFLSQV-RLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDD 69
           RQVL   L++ LS     EP  YSV+EETE  SFV +LAKDLGL   E + R  RV+S  
Sbjct: 12  RQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREFSRRGVRVVSRG 71

Query: 70  DKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHS 129
           +K  LQL+++T DLLL EKLDRE+LCG  EPCVL FQV LE P +FFQ EL + DINDHS
Sbjct: 72  NKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQAELQVIDINDHS 131

Query: 130 PIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKK 189
           P+F ++++L+K+ E+S PGT FPL  AEDLD+G N ++ Y ISPNS+F +LTR  S+G+K
Sbjct: 132 PVFLDKQMLVKVSESSPPGTAFPLKNAEDLDIGQNNIENYIISPNSYFRVLTRKRSDGRK 191

Query: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249
           YP+LV D  LDREE+ E  LTL ALDGGSPPRSGT  V I ++D+NDNAPEF    Y VQ
Sbjct: 192 YPELVLDNALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVVDVNDNAPEFQQPFYRVQ 251

Query: 250 VLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFE 309
           + E+SP+   +V+V A D+D G  G +SY LFQASDEI +TF ++ +TGEI LKK+LDFE
Sbjct: 252 ISEDSPISFLVVKVSATDVDTGVNGEISYSLFQASDEISKTFKVDFLTGEIRLKKQLDFE 311

Query: 310 KIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRI 369
           K +SY V IEA D GG SGK TV+I+V+DVND+ PE+ +S+ TS IPENAPETVV++F +
Sbjct: 312 KFQSYEVNIEARDAGGFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPENAPETVVALFSV 371

Query: 370 RDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPR 429
            D DSGENGK+ CSI ++LPF+LK ++ NFYTL+TE PLDRE+ AEYN+TI VTDLGTPR
Sbjct: 372 SDLDSGENGKISCSIQEDLPFLLKSSVGNFYTLLTETPLDRESRAEYNVTITVTDLGTPR 431

Query: 430 LKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL 489
           L T  N+TV VSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL
Sbjct: 432 LTTHLNMTVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL 491

Query: 490 LPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVL 549
           LPPQDPHLPLASLVSIN DNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVL
Sbjct: 492 LPPQDPHLPLASLVSINTDNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVL 551

Query: 550 VLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT 609
           VLD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT
Sbjct: 552 VLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT 611

Query: 610 EPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPY 669
           EPGLFGVWAHNGEVRTARLLSERDAAK RLVVLVKDNGEPP SATATLH+LLVDGFSQPY
Sbjct: 612 EPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPCSATATLHLLLVDGFSQPY 671

Query: 670 LPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEG 729
           LPLPEAAPAQ QADSLTVYLVVALASVSSLFLFSVLLFVAV LCRRSRAASVGRCSVPEG
Sbjct: 672 LPLPEAAPAQGQADSLTVYLVVALASVSSLFLFSVLLFVAVLLCRRSRAASVGRCSVPEG 731

Query: 730 PFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKFR 789
           PFPGHLVDV GTG+LSQ+YQYEVCL G SGT EF+FLKP+ PN+     G E+++N  FR
Sbjct: 732 PFPGHLVDVRGTGSLSQNYQYEVCLAGGSGTNEFQFLKPVLPNIQGHSFGPEMEQNSNFR 791

Query: 790 NSLVFS 795
           N   FS
Sbjct: 792 NGFGFS 797


>gi|14195616 protocadherin beta 9 precursor [Homo sapiens]
          Length = 797

 Score = 1142 bits (2955), Expect = 0.0
 Identities = 588/796 (73%), Positives = 657/796 (82%), Gaps = 1/796 (0%)

Query: 1   MKKLGRIHPN-RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELA 59
           MK  G   P  RQVL   L   +S       RYSV EETE GSFV +LAKDLGL  GELA
Sbjct: 1   MKTRGFSFPRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELA 60

Query: 60  SRSARVLSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGE 119
           +R  RV+SDD+KQ L LD  TG+LL  EKLDRE+LCGP EPC+L+FQ+ ++ P Q ++ E
Sbjct: 61  ARGTRVVSDDNKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAE 120

Query: 120 LLIQDINDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHI 179
           L ++DINDHSP+F  +E++LKI EN+  GT F L  A+D D G N +Q YTIS NS FHI
Sbjct: 121 LRVRDINDHSPVFRHKEMVLKISENTAEGTAFRLERAQDPDEGHNSIQNYTISSNSFFHI 180

Query: 180 LTRNHSEGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAP 239
                 EG  YP+LV DK LDREEQ E SLTL ALDGGSP RSGT  +RI+++D+NDNAP
Sbjct: 181 KISGSDEGMIYPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAP 240

Query: 240 EFVHTPYGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGE 299
           +F    Y  Q  ENSP+ S IV+V A D D+G    VSY  F AS++I  TF IN  +GE
Sbjct: 241 QFAQALYETQAPENSPVGSLIVKVSAGDADSGVNAEVSYSFFDASEDILTTFQINPFSGE 300

Query: 300 ILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENA 359
           I L++ LD+E + SY + I+A DGGGLS + TV+I+V+D NDNPPELIISSL++S+ EN+
Sbjct: 301 IFLRELLDYELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIISSLSNSVAENS 360

Query: 360 PETVVSIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNIT 419
           P  V+++F+I+DRDSGENGK IC + DNLPF LKP++ NFY L+TE  LDRE+ AEYNIT
Sbjct: 361 PGIVLAVFKIKDRDSGENGKTICYVQDNLPFFLKPSVDNFYILMTEGALDRESKAEYNIT 420

Query: 420 IAVTDLGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS 479
           I VTDLGTPRLKT+ +IT+QVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS
Sbjct: 421 ITVTDLGTPRLKTEHSITLQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS 480

Query: 480 GTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPA 539
           GTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAF+FRVGASDRGSPA
Sbjct: 481 GTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFDFRVGASDRGSPA 540

Query: 540 LSSEALVRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 599
           LSSEALVRVLVLD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600

Query: 600 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 659
           WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660

Query: 660 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 719
           LLVDGFSQPYLPLPEAAPAQAQAD LTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAA 720

Query: 720 SVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTG 779
           SVGRCSVPEGPFPGHLVDVSGTGTL QSYQYEVCLTG S TGEFKFLKPI P+L     G
Sbjct: 721 SVGRCSVPEGPFPGHLVDVSGTGTLFQSYQYEVCLTGGSETGEFKFLKPITPHLPPHRGG 780

Query: 780 REVKENPKFRNSLVFS 795
           +E++EN    NS  F+
Sbjct: 781 KEIEENSTLPNSFGFN 796


>gi|11036654 protocadherin beta 13 precursor [Homo sapiens]
          Length = 798

 Score = 1139 bits (2946), Expect = 0.0
 Identities = 583/786 (74%), Positives = 657/786 (83%), Gaps = 2/786 (0%)

Query: 11  RQVLAFILMVFLSQV-RLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDD 69
           RQVL   L++ LS     EP  YSV+EETE  SFV +LAKDLGL   E + R  RV+S  
Sbjct: 12  RQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREFSRRGVRVVSRG 71

Query: 70  DKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHS 129
           +K  LQL+++T DLLL EKLDRE+LCG  EPCVL FQV LE P +FFQ EL + DINDHS
Sbjct: 72  NKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQAELQVIDINDHS 131

Query: 130 PIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKK 189
           P+F ++++L+K+ E+S PGT FPL  AEDLDVG N ++ Y ISPNS+F +LTR  S+G+K
Sbjct: 132 PVFLDKQMLVKVSESSPPGTTFPLKNAEDLDVGQNNIENYIISPNSYFRVLTRKRSDGRK 191

Query: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249
           YP+LV DK LDREE+ E  LTL ALDGGSPPRSGT  V I ++D+NDNAPEF    Y VQ
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251

Query: 250 VLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFE 309
           + E+SP+   +V+V A D+D G  G +SY LFQAS+EI +TF IN +TGEI LKK+LDFE
Sbjct: 252 ISEDSPVGFLVVKVSATDVDTGVNGEISYSLFQASEEIGKTFKINPLTGEIELKKQLDFE 311

Query: 310 KIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRI 369
           K++SY V IEA D G  SGK TV+I+V+DVND+ PE+ +S+ TS IPENAPETVV++F +
Sbjct: 312 KLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPENAPETVVALFSV 371

Query: 370 RDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPR 429
            D DSGENGK+ CSI ++LPF+LK + +NFYTL+TERPLDRE+ AEYNITI VTDLGTP 
Sbjct: 372 SDLDSGENGKISCSIQEDLPFLLK-SAENFYTLLTERPLDRESRAEYNITITVTDLGTPM 430

Query: 430 LKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL 489
           L TQ N+TV ++DVNDNAPAFTQTSYTLFVRENNSPALHI SVSATDRDSGTNAQVTYSL
Sbjct: 431 LITQLNMTVLIADVNDNAPAFTQTSYTLFVRENNSPALHIRSVSATDRDSGTNAQVTYSL 490

Query: 490 LPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVL 549
           LPPQDPHLPL SLVSINADNGHLFALRSLDYEALQ F+FRVGASD GSPALSSEALVRV+
Sbjct: 491 LPPQDPHLPLTSLVSINADNGHLFALRSLDYEALQGFQFRVGASDHGSPALSSEALVRVV 550

Query: 550 VLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT 609
           VLD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT
Sbjct: 551 VLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT 610

Query: 610 EPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPY 669
           E GLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPY
Sbjct: 611 ELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPY 670

Query: 670 LPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEG 729
           LPLPEAAP QAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRC VPEG
Sbjct: 671 LPLPEAAPTQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCLVPEG 730

Query: 730 PFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKFR 789
           P PGHLVD+SGT TLSQSYQYEVCL G SGT EFKFLKPI PN   Q  G+E++ N  F 
Sbjct: 731 PLPGHLVDMSGTRTLSQSYQYEVCLAGGSGTNEFKFLKPIIPNFPPQCPGKEIQGNSTFP 790

Query: 790 NSLVFS 795
           N+  F+
Sbjct: 791 NNFGFN 796


>gi|9256602 protocadherin beta 10 precursor [Homo sapiens]
          Length = 800

 Score = 1137 bits (2941), Expect = 0.0
 Identities = 579/787 (73%), Positives = 651/787 (82%), Gaps = 2/787 (0%)

Query: 11  RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
           RQVL   L   +S       RYSV EETE GSFV +LAKDLGL  GELA+R  RV+SDD+
Sbjct: 12  RQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELAARGTRVVSDDN 71

Query: 71  KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
           KQ L LD  TG+LL  EKLDRE+LCGP EPC+L+FQ+ ++ P Q ++ EL ++DINDH+P
Sbjct: 72  KQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAELRVRDINDHAP 131

Query: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
           +F ++E +LKI EN+  GT F L  A+D D G NG+Q YTISPNS FHI      EG  Y
Sbjct: 132 VFQDKETVLKISENTAEGTAFRLERAQDPDGGLNGIQNYTISPNSFFHINISGGDEGMIY 191

Query: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
           P+LV DK LDREEQ E SLTL ALDGGSP RSGT  VRI+++D+NDNAP+F    Y  Q 
Sbjct: 192 PELVLDKALDREEQGELSLTLTALDGGSPSRSGTSTVRIVVLDVNDNAPQFAQALYETQA 251

Query: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
            ENSP+   IV+V A D+D+G    VSY  F AS+ I+ TF IN  +GEI L++ LD+E 
Sbjct: 252 PENSPIGFLIVKVWAEDVDSGVNAEVSYSFFDASENIRTTFQINPFSGEIFLRELLDYEL 311

Query: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRIR 370
           + SY + I+A DGGGLS +  V++EV+D NDNPPELI+SS ++S+ EN+PET +++F+I 
Sbjct: 312 VNSYKINIQAMDGGGLSARCRVLVEVLDTNDNPPELIVSSFSNSVAENSPETPLAVFKIN 371

Query: 371 DRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRL 430
           DRDSGENGKM+C I +NLPF+LKP+++NFY L+TE  LDRE  AEYNITI VTDLGTPRL
Sbjct: 372 DRDSGENGKMVCYIQENLPFLLKPSVENFYILITEGALDREIRAEYNITITVTDLGTPRL 431

Query: 431 KTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 490
           KT+ NITV VSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL
Sbjct: 432 KTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 491

Query: 491 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLV 550
           PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGA+DRGSPALS EALVRVLV
Sbjct: 492 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALVRVLV 551

Query: 551 LDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
           LD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 552 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611

Query: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
           PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH+LLVDGFSQPYL
Sbjct: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHLLLVDGFSQPYL 671

Query: 671 PLPEAAPAQAQ--ADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPE 728
           PLPEAAPAQAQ  AD LTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAASVGRCSVPE
Sbjct: 672 PLPEAAPAQAQAEADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAASVGRCSVPE 731

Query: 729 GPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKF 788
           GPFPGHLVDV G  TLSQSYQYEVCLTG  GT EFKFLKP+  ++  Q  GR+ +EN  F
Sbjct: 732 GPFPGHLVDVRGAETLSQSYQYEVCLTGGPGTSEFKFLKPVISDIQAQGPGRKGEENSTF 791

Query: 789 RNSLVFS 795
           RNS  F+
Sbjct: 792 RNSFGFN 798


>gi|14195607 protocadherin beta 1 precursor [Homo sapiens]
          Length = 818

 Score =  779 bits (2011), Expect = 0.0
 Identities = 396/778 (50%), Positives = 543/778 (69%), Gaps = 4/778 (0%)

Query: 10  NRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDD 69
           NRQV + ++ + +S      IRYSV EE ESGSFVA++AKDLGL +G+LA+R AR++S+ 
Sbjct: 11  NRQVGSLLIFLCISVGDATTIRYSVAEEMESGSFVANVAKDLGLEVGKLAARGARLVSEG 70

Query: 70  DKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHS 129
           +K   +L R+TGDL ++EKLDRE LCG  +PCVLHF+V L  P+Q F+ E+ + DIND++
Sbjct: 71  NKMHFRLHRKTGDLFVKEKLDRESLCGKADPCVLHFEVVLVEPLQSFRAEVRVFDINDNA 130

Query: 130 PIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKK 189
           P+F  +E LLKI E++  G+ FPL  A+DLDVG NGLQ YT+S N +FH+ TR  S G K
Sbjct: 131 PVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANGYFHLHTRFCSHGPK 190

Query: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249
           Y +LV +KPLDREEQPE +LT+ A+DGGSPP+SGT  + ++++D+ND+ P+F    Y  Q
Sbjct: 191 YAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYRAQ 250

Query: 250 VLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFE 309
           V ENSP  S +  V A D+D G   +++Y L Q  + I +TF I+   GE+ L+  LDFE
Sbjct: 251 VSENSPNGSLVATVTAVDLDEGTNKAITYSLAQNPEAILKTFQIDPQNGEVRLRGPLDFE 310

Query: 310 KIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAP-ETVVSIFR 368
            I++Y ++I+ATDGGGLS    V++EVVDVNDNPPE+++SS++S +PE++P +TVV++F 
Sbjct: 311 AIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVMVSSVSSPLPEDSPPQTVVALFT 370

Query: 369 IRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTP 428
           IRDRD    GK+ C + ++LPF++KPT  N Y+LVT+R LDRE  + YNITI   D G P
Sbjct: 371 IRDRDIRVGGKVTCFLREDLPFVIKPTFGNSYSLVTDRSLDREEVSGYNITIVAMDTGPP 430

Query: 429 RLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 488
            L  +  I V +SDVNDN P F + SY L VRENNSPA+ IG V A D D G NAQ+TYS
Sbjct: 431 SLSAETMIEVLISDVNDNPPIFREDSYILTVRENNSPAVFIGKVHAEDLDLGENAQITYS 490

Query: 489 LLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRV 548
           LLPP++  L + + +SIN+ NG L+ALR++DYEA+Q F+F V A+D G  +LSS+  VRV
Sbjct: 491 LLPPKNGDLSVFAYISINSGNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSQVTVRV 550

Query: 549 LVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 608
           +VLD NDN P +LYPLQNG+ PC +LVPR+AE GYLVTKVVAVDGDSGQN+WLSY LLKA
Sbjct: 551 VVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQNSWLSYHLLKA 610

Query: 609 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 668
           T+ GLF V   NGE+ T R +SERD    +L++LV+D+G+P  S T +L++LLVDGFS+P
Sbjct: 611 TDLGLFSVQRQNGEIHTLRQISERDPMMQKLIILVQDHGQPALSTTVSLNILLVDGFSEP 670

Query: 669 YLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR---AASVGRCS 725
           YL   +      + +  T YLV++L  +S LFL SV++   + + ++ +     ++    
Sbjct: 671 YLQFQDPTKHSRKVNPSTKYLVISLVILSFLFLLSVIVIFIIHVYQKIKYREKFTIQEHF 730

Query: 726 VPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVK 783
             +  F  +LV   G G+LS+   YE+C    +G  EF+FLK   PN        E+K
Sbjct: 731 YDDCNFSNNLVQGQGNGSLSRPCPYEMCSATGTGNSEFRFLKRFMPNFPFPHATGEIK 788


>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  633 bits (1633), Expect = 0.0
 Identities = 351/782 (44%), Positives = 478/782 (61%), Gaps = 6/782 (0%)

Query: 8   HPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLS 67
           H  + VL   L+  L + R   IRYSV EE + GSFV ++AKDLGL    LA +  R++S
Sbjct: 9   HCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVS 68

Query: 68  DDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDIND 127
               Q   L+ ++G L+   ++DREELC    PC+L+F + LE  +  +  E+ I DIND
Sbjct: 69  RGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDIND 128

Query: 128 HSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEG 187
           ++P F   E+ LKI E + PG   PL  A D DVG N LQKY ++PN HF +  R  ++G
Sbjct: 129 NAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADG 188

Query: 188 KKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYG 247
            KYP+LV ++ LDREE+    L LVA DGG P  SGT  + + ++D NDNAP F    Y 
Sbjct: 189 NKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYR 248

Query: 248 VQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLD 307
           + + EN+ + + I+ V A D D G +  V Y L ++  E  + F +   +GE+ + K LD
Sbjct: 249 ISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLD 308

Query: 308 FEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENA-PETVVSI 366
           +E    + ++IEA DG GL  +  V++ V+DVNDN PE  ++S TSS+ E++ P T++ +
Sbjct: 309 YEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGL 368

Query: 367 FRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLG 426
           F + DRDSG+N    CS+P++LPF L+ ++ N+Y LVT R LDRE  + YNIT+   D G
Sbjct: 369 FNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGG 428

Query: 427 TPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 486
            P L T  +I +QV+D+NDNAPAF++TSY+ ++ ENN     + SV+A D DS  NA VT
Sbjct: 429 NPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVT 488

Query: 487 YSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALV 546
           YS         PL+S +SIN+D G L+ALRS DYE L+  +  V A D G+P LSS   +
Sbjct: 489 YSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSL 548

Query: 547 RVLVLDTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 605
            + VLD NDN+P +LYP      +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY L
Sbjct: 549 SLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHL 608

Query: 606 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 665
           LKA+EPGLF V  H GEVRTAR L +RDA K  LVV ++D+G+PP SAT TL V + D  
Sbjct: 609 LKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRI 668

Query: 666 SQPYLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAASVG 722
                 L    P+    DS LT+YLVVA+A+VS +FL  V++ +A RL R  +SR     
Sbjct: 669 PDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQAS 728

Query: 723 RCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREV 782
             S+  G    H V V G     Q+Y +EV LT DS      F +P + + L+     E 
Sbjct: 729 GGSL-TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEK 787

Query: 783 KE 784
           K+
Sbjct: 788 KD 789


>gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precursor
           [Homo sapiens]
          Length = 823

 Score =  633 bits (1633), Expect = 0.0
 Identities = 351/782 (44%), Positives = 478/782 (61%), Gaps = 6/782 (0%)

Query: 8   HPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLS 67
           H  + VL   L+  L + R   IRYSV EE + GSFV ++AKDLGL    LA +  R++S
Sbjct: 9   HCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVS 68

Query: 68  DDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDIND 127
               Q   L+ ++G L+   ++DREELC    PC+L+F + LE  +  +  E+ I DIND
Sbjct: 69  RGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDIND 128

Query: 128 HSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEG 187
           ++P F   E+ LKI E + PG   PL  A D DVG N LQKY ++PN HF +  R  ++G
Sbjct: 129 NAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADG 188

Query: 188 KKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYG 247
            KYP+LV ++ LDREE+    L LVA DGG P  SGT  + + ++D NDNAP F    Y 
Sbjct: 189 NKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYR 248

Query: 248 VQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLD 307
           + + EN+ + + I+ V A D D G +  V Y L ++  E  + F +   +GE+ + K LD
Sbjct: 249 ISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLD 308

Query: 308 FEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENA-PETVVSI 366
           +E    + ++IEA DG GL  +  V++ V+DVNDN PE  ++S TSS+ E++ P T++ +
Sbjct: 309 YEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGL 368

Query: 367 FRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLG 426
           F + DRDSG+N    CS+P++LPF L+ ++ N+Y LVT R LDRE  + YNIT+   D G
Sbjct: 369 FNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGG 428

Query: 427 TPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 486
            P L T  +I +QV+D+NDNAPAF++TSY+ ++ ENN     + SV+A D DS  NA VT
Sbjct: 429 NPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVT 488

Query: 487 YSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALV 546
           YS         PL+S +SIN+D G L+ALRS DYE L+  +  V A D G+P LSS   +
Sbjct: 489 YSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSL 548

Query: 547 RVLVLDTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 605
            + VLD NDN+P +LYP      +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY L
Sbjct: 549 SLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHL 608

Query: 606 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 665
           LKA+EPGLF V  H GEVRTAR L +RDA K  LVV ++D+G+PP SAT TL V + D  
Sbjct: 609 LKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRI 668

Query: 666 SQPYLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAASVG 722
                 L    P+    DS LT+YLVVA+A+VS +FL  V++ +A RL R  +SR     
Sbjct: 669 PDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQAS 728

Query: 723 RCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREV 782
             S+  G    H V V G     Q+Y +EV LT DS      F +P + + L+     E 
Sbjct: 729 GGSL-TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEK 787

Query: 783 KE 784
           K+
Sbjct: 788 KD 789


>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  630 bits (1626), Expect = e-180
 Identities = 347/764 (45%), Positives = 486/764 (63%), Gaps = 12/764 (1%)

Query: 30  IRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDDKQRLQLDRQTGDLLLREKL 89
           I YSV EET+ GSFV  +AKDLGL   ELA R  R++S    Q   L++++G L+   ++
Sbjct: 31  ILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGSLVTAGRI 90

Query: 90  DREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSPIFPEREVLLKILENSQPGT 149
           DREE+C     C+++F + +E  +  +  ++ I DIND+ P F   E+ +KI+EN+ PG 
Sbjct: 91  DREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVKIMENTAPGV 150

Query: 150 LFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKYPDLVQDKPLDREEQPEFSL 209
            FPL  A D DVG+N LQ Y +SPN HF +  ++  +  KYP+LV ++ LDREE+    L
Sbjct: 151 RFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPELVLERVLDREEERVHHL 210

Query: 210 TLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQVLENSPLDSPIVRVLARDID 269
            L A DGG PPRS T  +++ ++D+ND+ P F    Y V V EN P+ + ++ V A D+D
Sbjct: 211 VLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAIDLD 270

Query: 270 AGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEKIKSYHVEIEATDGGGLSGK 329
            G  G V+Y   + + ++ + F +N +TGEI   + LD+E+   Y +E++A DG G   K
Sbjct: 271 EGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDGPGSLTK 330

Query: 330 GTVVIEVVDVNDNPPELIISSLTSSIPENAP-ETVVSIFRIRDRDSGENGKMICSIPDNL 388
             V+I V+DVNDN PE+ ++SL+SSIPE+ P  TV+++F ++DRDSG+NG++ C+IP+NL
Sbjct: 331 AKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENL 390

Query: 389 PFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRLKTQQNITVQVSDVNDNAP 448
           PF L+ ++ N+Y LVT + LDRET + YNIT+  TD GTP L  + +I +QV+D NDN P
Sbjct: 391 PFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPP 450

Query: 449 AFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINAD 508
            F  +SY++++ ENN     I  V+A D DS  NAQ+TYSL        P++S VSIN+D
Sbjct: 451 TFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSINSD 510

Query: 509 NGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLVLDTNDNSPFVLYP-LQNG 567
            G L+AL+S DYE L+  + RV A D G P LSS   + + VLD NDN P +LYP L   
Sbjct: 511 TGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPALPTD 570

Query: 568 SAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTAR 627
            +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY LLKA+EPGLF V  + GEVRTAR
Sbjct: 571 GSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLYTGEVRTAR 630

Query: 628 LLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQAD-SLT 686
            L +RDA K  LVV V+D+G+PP SAT TL V + D   +    L    P+    +  LT
Sbjct: 631 ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLEPSDGPYNYDLT 690

Query: 687 VYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVGRCSVPEGPFPGHLVDVSGT 741
           +YLVVA+A+VS +FL  VL+ +A+RL R  +SR   A+  G  +VP      H V + G 
Sbjct: 691 LYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLANVP----TSHFVGMDGV 746

Query: 742 GTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKEN 785
               Q+Y +EV LT DS      F +P + ++L+     E  ++
Sbjct: 747 QAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESCEKNDS 790


>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
           [Homo sapiens]
          Length = 813

 Score =  630 bits (1626), Expect = e-180
 Identities = 355/777 (45%), Positives = 487/777 (62%), Gaps = 6/777 (0%)

Query: 13  VLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDDKQ 72
           +L F+L+  L +     IRYS+ EE + GSFV ++AKDLGL   ELA R  R++S    Q
Sbjct: 14  LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRTQ 73

Query: 73  RLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSPIF 132
              L+ ++G L+   ++DREELC     CV++F + +E  ++ +  E+ I DIND+ P F
Sbjct: 74  LFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPRF 133

Query: 133 PEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKYPD 192
            + E+ +K+ EN+  GT   L  A D DVG N L+ Y +S N HF +   + ++G+KYP+
Sbjct: 134 RDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYPE 193

Query: 193 LVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQVLE 252
           LV ++PLDRE++    L L ALDGG P  SGT  +R+ ++D NDNAP F  + Y V V E
Sbjct: 194 LVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPE 253

Query: 253 NSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEKIK 312
           N P+ + ++ + A D D G  G ++Y      ++I +TF ++   GEI   + LD+E+ +
Sbjct: 254 NIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEESR 313

Query: 313 SYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENA-PETVVSIFRIRD 371
            Y +E+ A DGG L     VV+ V DVNDN PE+I++SLTSSI E+  P TV+++F + D
Sbjct: 314 FYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVHD 373

Query: 372 RDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRLK 431
            DSGENG++ CSIP NLPF L+ ++ N+Y L+T R LDRE +++YNIT+ V D GTP L 
Sbjct: 374 GDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPLS 433

Query: 432 TQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLP 491
           T+ +I ++V+DVNDN P F Q SY+  V ENN   + I SV+A D DSG NA+VTYSL  
Sbjct: 434 TESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAE 493

Query: 492 PQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLVL 551
                 PL+S VSIN+D G L+ALRS DYE L+  +  V ASD G+P LSS   + + VL
Sbjct: 494 DTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVL 553

Query: 552 DTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
           D NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+LLKA+E
Sbjct: 554 DQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASE 613

Query: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
           PGLF V  H GEVRTAR L +RDA K  LVV V+D+G+PP SAT T+ V + D       
Sbjct: 614 PGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDILA 673

Query: 671 PLPE-AAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAASVGRCSVP 727
            L     P   +   LT+YLVVA+A+VS +FL  V++ + +RL R  +SR        + 
Sbjct: 674 DLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRLA 733

Query: 728 EGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKE 784
             P   H V V G     Q+Y +EV LT DS      F +P + + L+ +   E  E
Sbjct: 734 GVP-ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEESCEKSE 789


>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  630 bits (1626), Expect = e-180
 Identities = 355/777 (45%), Positives = 487/777 (62%), Gaps = 6/777 (0%)

Query: 13  VLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDDKQ 72
           +L F+L+  L +     IRYS+ EE + GSFV ++AKDLGL   ELA R  R++S    Q
Sbjct: 14  LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRTQ 73

Query: 73  RLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSPIF 132
              L+ ++G L+   ++DREELC     CV++F + +E  ++ +  E+ I DIND+ P F
Sbjct: 74  LFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPRF 133

Query: 133 PEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKYPD 192
            + E+ +K+ EN+  GT   L  A D DVG N L+ Y +S N HF +   + ++G+KYP+
Sbjct: 134 RDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYPE 193

Query: 193 LVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQVLE 252
           LV ++PLDRE++    L L ALDGG P  SGT  +R+ ++D NDNAP F  + Y V V E
Sbjct: 194 LVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPE 253

Query: 253 NSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEKIK 312
           N P+ + ++ + A D D G  G ++Y      ++I +TF ++   GEI   + LD+E+ +
Sbjct: 254 NIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEESR 313

Query: 313 SYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENA-PETVVSIFRIRD 371
            Y +E+ A DGG L     VV+ V DVNDN PE+I++SLTSSI E+  P TV+++F + D
Sbjct: 314 FYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVHD 373

Query: 372 RDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRLK 431
            DSGENG++ CSIP NLPF L+ ++ N+Y L+T R LDRE +++YNIT+ V D GTP L 
Sbjct: 374 GDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPLS 433

Query: 432 TQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLP 491
           T+ +I ++V+DVNDN P F Q SY+  V ENN   + I SV+A D DSG NA+VTYSL  
Sbjct: 434 TESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAE 493

Query: 492 PQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLVL 551
                 PL+S VSIN+D G L+ALRS DYE L+  +  V ASD G+P LSS   + + VL
Sbjct: 494 DTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVL 553

Query: 552 DTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
           D NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+LLKA+E
Sbjct: 554 DQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASE 613

Query: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
           PGLF V  H GEVRTAR L +RDA K  LVV V+D+G+PP SAT T+ V + D       
Sbjct: 614 PGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDILA 673

Query: 671 PLPE-AAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAASVGRCSVP 727
            L     P   +   LT+YLVVA+A+VS +FL  V++ + +RL R  +SR        + 
Sbjct: 674 DLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRLA 733

Query: 728 EGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKE 784
             P   H V V G     Q+Y +EV LT DS      F +P + + L+ +   E  E
Sbjct: 734 GVP-ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEESCEKSE 789


>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
           [Homo sapiens]
          Length = 817

 Score =  630 bits (1626), Expect = e-180
 Identities = 347/764 (45%), Positives = 486/764 (63%), Gaps = 12/764 (1%)

Query: 30  IRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDDKQRLQLDRQTGDLLLREKL 89
           I YSV EET+ GSFV  +AKDLGL   ELA R  R++S    Q   L++++G L+   ++
Sbjct: 31  ILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGSLVTAGRI 90

Query: 90  DREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSPIFPEREVLLKILENSQPGT 149
           DREE+C     C+++F + +E  +  +  ++ I DIND+ P F   E+ +KI+EN+ PG 
Sbjct: 91  DREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVKIMENTAPGV 150

Query: 150 LFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKYPDLVQDKPLDREEQPEFSL 209
            FPL  A D DVG+N LQ Y +SPN HF +  ++  +  KYP+LV ++ LDREE+    L
Sbjct: 151 RFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPELVLERVLDREEERVHHL 210

Query: 210 TLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQVLENSPLDSPIVRVLARDID 269
            L A DGG PPRS T  +++ ++D+ND+ P F    Y V V EN P+ + ++ V A D+D
Sbjct: 211 VLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAIDLD 270

Query: 270 AGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEKIKSYHVEIEATDGGGLSGK 329
            G  G V+Y   + + ++ + F +N +TGEI   + LD+E+   Y +E++A DG G   K
Sbjct: 271 EGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDGPGSLTK 330

Query: 330 GTVVIEVVDVNDNPPELIISSLTSSIPENAP-ETVVSIFRIRDRDSGENGKMICSIPDNL 388
             V+I V+DVNDN PE+ ++SL+SSIPE+ P  TV+++F ++DRDSG+NG++ C+IP+NL
Sbjct: 331 AKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENL 390

Query: 389 PFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRLKTQQNITVQVSDVNDNAP 448
           PF L+ ++ N+Y LVT + LDRET + YNIT+  TD GTP L  + +I +QV+D NDN P
Sbjct: 391 PFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPP 450

Query: 449 AFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINAD 508
            F  +SY++++ ENN     I  V+A D DS  NAQ+TYSL        P++S VSIN+D
Sbjct: 451 TFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSINSD 510

Query: 509 NGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLVLDTNDNSPFVLYP-LQNG 567
            G L+AL+S DYE L+  + RV A D G P LSS   + + VLD NDN P +LYP L   
Sbjct: 511 TGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPALPTD 570

Query: 568 SAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTAR 627
            +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY LLKA+EPGLF V  + GEVRTAR
Sbjct: 571 GSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLYTGEVRTAR 630

Query: 628 LLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQAD-SLT 686
            L +RDA K  LVV V+D+G+PP SAT TL V + D   +    L    P+    +  LT
Sbjct: 631 ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLEPSDGPYNYDLT 690

Query: 687 VYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVGRCSVPEGPFPGHLVDVSGT 741
           +YLVVA+A+VS +FL  VL+ +A+RL R  +SR   A+  G  +VP      H V + G 
Sbjct: 691 LYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLANVP----TSHFVGMDGV 746

Query: 742 GTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKEN 785
               Q+Y +EV LT DS      F +P + ++L+     E  ++
Sbjct: 747 QAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESCEKNDS 790


>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  630 bits (1625), Expect = e-180
 Identities = 357/787 (45%), Positives = 482/787 (61%), Gaps = 14/787 (1%)

Query: 8   HPNR--QVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARV 65
           HP R  QVL   L+  L       IRYS+ EE E GSFV ++ KDLGL   ELA    R+
Sbjct: 7   HPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRI 66

Query: 66  LSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDI 125
           +S    Q   L+ + G L+   ++DREELC     C++ F + +E  +  +  E+ I DI
Sbjct: 67  VSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDI 126

Query: 126 NDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHS 185
           ND++P F + E+ +KILEN+ P + FPL+   D DVG N LQ + +S NSHF +  ++ +
Sbjct: 127 NDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEA 186

Query: 186 EGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTP 245
            G KYP+LV +  LDRE +  + L L A+DGG P RS    + + ++D+NDN P F    
Sbjct: 187 HGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPV 246

Query: 246 YGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKK 305
           Y V V EN P+ +P++ V A D D G  G V+Y   + +++I Q F +N +TGEI     
Sbjct: 247 YRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSAN 306

Query: 306 LDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPE-TVV 364
           LD+E    Y + +EA DG GL  +  V+I ++DVNDN PE++++S + +I E+AP  TV+
Sbjct: 307 LDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVI 366

Query: 365 SIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTD 424
           ++F++ DRDSG NG + CSIP +LPF L+ ++ N+Y LVT   LDRE    YNIT+  TD
Sbjct: 367 ALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATD 426

Query: 425 LGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQ 484
            GTP L T+  I++ V+D NDN P F  +SY+++V ENN     I SV+A D D   NAQ
Sbjct: 427 KGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQ 486

Query: 485 VTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEA 544
           V+YSL        PL+S VSIN+D G L+ALRS DYE L+  +  V ASD G P LSS  
Sbjct: 487 VSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNV 546

Query: 545 LVRVLVLDTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSY 603
            + + VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY
Sbjct: 547 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSY 606

Query: 604 QLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVD 663
           +LLKA+EPGLF V  H GEVRTAR L +RDA K  LVV V+D+G+PP SAT TL V + D
Sbjct: 607 RLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 666

Query: 664 GFSQPYLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR--- 717
                   L    P+    DS LT+YLVVA+A+VS +FL  V++ +A+RL R  +SR   
Sbjct: 667 RIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQ 726

Query: 718 AASVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQD 777
           A+  G  S+P      H V V G     Q+Y +EV LT DS      F +P + + L+  
Sbjct: 727 ASGGGLASMP----GSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLINQ 782

Query: 778 TGREVKE 784
              E  E
Sbjct: 783 ESYEKSE 789


>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
           [Homo sapiens]
          Length = 818

 Score =  630 bits (1625), Expect = e-180
 Identities = 357/787 (45%), Positives = 482/787 (61%), Gaps = 14/787 (1%)

Query: 8   HPNR--QVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARV 65
           HP R  QVL   L+  L       IRYS+ EE E GSFV ++ KDLGL   ELA    R+
Sbjct: 7   HPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRI 66

Query: 66  LSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDI 125
           +S    Q   L+ + G L+   ++DREELC     C++ F + +E  +  +  E+ I DI
Sbjct: 67  VSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDI 126

Query: 126 NDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHS 185
           ND++P F + E+ +KILEN+ P + FPL+   D DVG N LQ + +S NSHF +  ++ +
Sbjct: 127 NDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEA 186

Query: 186 EGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTP 245
            G KYP+LV +  LDRE +  + L L A+DGG P RS    + + ++D+NDN P F    
Sbjct: 187 HGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPV 246

Query: 246 YGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKK 305
           Y V V EN P+ +P++ V A D D G  G V+Y   + +++I Q F +N +TGEI     
Sbjct: 247 YRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSAN 306

Query: 306 LDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPE-TVV 364
           LD+E    Y + +EA DG GL  +  V+I ++DVNDN PE++++S + +I E+AP  TV+
Sbjct: 307 LDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVI 366

Query: 365 SIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTD 424
           ++F++ DRDSG NG + CSIP +LPF L+ ++ N+Y LVT   LDRE    YNIT+  TD
Sbjct: 367 ALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATD 426

Query: 425 LGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQ 484
            GTP L T+  I++ V+D NDN P F  +SY+++V ENN     I SV+A D D   NAQ
Sbjct: 427 KGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQ 486

Query: 485 VTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEA 544
           V+YSL        PL+S VSIN+D G L+ALRS DYE L+  +  V ASD G P LSS  
Sbjct: 487 VSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNV 546

Query: 545 LVRVLVLDTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSY 603
            + + VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY
Sbjct: 547 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSY 606

Query: 604 QLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVD 663
           +LLKA+EPGLF V  H GEVRTAR L +RDA K  LVV V+D+G+PP SAT TL V + D
Sbjct: 607 RLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 666

Query: 664 GFSQPYLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR--- 717
                   L    P+    DS LT+YLVVA+A+VS +FL  V++ +A+RL R  +SR   
Sbjct: 667 RIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQ 726

Query: 718 AASVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQD 777
           A+  G  S+P      H V V G     Q+Y +EV LT DS      F +P + + L+  
Sbjct: 727 ASGGGLASMP----GSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLINQ 782

Query: 778 TGREVKE 784
              E  E
Sbjct: 783 ESYEKSE 789


>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  629 bits (1623), Expect = e-180
 Identities = 353/782 (45%), Positives = 479/782 (61%), Gaps = 12/782 (1%)

Query: 10  NRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDD 69
           +R +L  + +  L +     I YSV EET+ GSFV ++AKDLGL   ELA    R++S  
Sbjct: 11  SRLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRG 70

Query: 70  DKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHS 129
                 L+ ++G L+   ++DREELC    PC++ F + +E  ++ F  E+ I DIND++
Sbjct: 71  RMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNT 130

Query: 130 PIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKK 189
           P F   E+  K+ E + PGT   L   +DLDVG N LQ Y +S N HF +  +  ++G +
Sbjct: 131 PQFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQ 190

Query: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249
           +P++V   PLDREE+    L L A DGG P RSGT+ + I ++D NDN P F    Y + 
Sbjct: 191 HPEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHIN 250

Query: 250 VLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFE 309
           V EN PL + ++ V A D D G  G V+Y        + Q F ++  TGEI  K+ LDFE
Sbjct: 251 VPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFE 310

Query: 310 KIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPEN-APETVVSIFR 368
           + K Y +E++A DG GL  K  V+I+V+DVNDN PE+ I+S+T+++PEN  P T++++  
Sbjct: 311 EYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALIS 370

Query: 369 IRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTP 428
           + D+DSG+NG   C IP NLPF L+  + N+Y LVTER LDRE  + YNITI   D GTP
Sbjct: 371 VHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTP 430

Query: 429 RLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 488
            L T+ +I++ V+D+NDN+P F Q SY+ ++ ENN     I SV A D DS  NAQ+TYS
Sbjct: 431 ALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYS 490

Query: 489 LLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRV 548
           L+       PL++ +SIN+D G L+ALRS DYE  +  + +V A D G P LSS   + +
Sbjct: 491 LIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSL 550

Query: 549 LVLDTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 607
            +LD NDN+P +LYP L    +   EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLK
Sbjct: 551 FLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610

Query: 608 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 667
           A+EPGLF V  H GEVRTAR L +RDA K  LVV V+D+G+PP SAT TL V + D  S 
Sbjct: 611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISD 670

Query: 668 PYLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASV 721
               L    P+    DS LT+YLVVA A+VS +FL  V++ +A RL R  +SR   A+  
Sbjct: 671 ILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGG 730

Query: 722 GRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGRE 781
           G  S+P      H V V G     Q+Y +EV LT DS      F +P + + L+     E
Sbjct: 731 GLASMP----GSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCE 786

Query: 782 VK 783
            K
Sbjct: 787 KK 788


>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
           [Homo sapiens]
          Length = 823

 Score =  629 bits (1623), Expect = e-180
 Identities = 353/782 (45%), Positives = 479/782 (61%), Gaps = 12/782 (1%)

Query: 10  NRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDD 69
           +R +L  + +  L +     I YSV EET+ GSFV ++AKDLGL   ELA    R++S  
Sbjct: 11  SRLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRG 70

Query: 70  DKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHS 129
                 L+ ++G L+   ++DREELC    PC++ F + +E  ++ F  E+ I DIND++
Sbjct: 71  RMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNT 130

Query: 130 PIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKK 189
           P F   E+  K+ E + PGT   L   +DLDVG N LQ Y +S N HF +  +  ++G +
Sbjct: 131 PQFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQ 190

Query: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249
           +P++V   PLDREE+    L L A DGG P RSGT+ + I ++D NDN P F    Y + 
Sbjct: 191 HPEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHIN 250

Query: 250 VLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFE 309
           V EN PL + ++ V A D D G  G V+Y        + Q F ++  TGEI  K+ LDFE
Sbjct: 251 VPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFE 310

Query: 310 KIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPEN-APETVVSIFR 368
           + K Y +E++A DG GL  K  V+I+V+DVNDN PE+ I+S+T+++PEN  P T++++  
Sbjct: 311 EYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALIS 370

Query: 369 IRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTP 428
           + D+DSG+NG   C IP NLPF L+  + N+Y LVTER LDRE  + YNITI   D GTP
Sbjct: 371 VHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTP 430

Query: 429 RLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 488
            L T+ +I++ V+D+NDN+P F Q SY+ ++ ENN     I SV A D DS  NAQ+TYS
Sbjct: 431 ALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYS 490

Query: 489 LLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRV 548
           L+       PL++ +SIN+D G L+ALRS DYE  +  + +V A D G P LSS   + +
Sbjct: 491 LIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSL 550

Query: 549 LVLDTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 607
            +LD NDN+P +LYP L    +   EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLK
Sbjct: 551 FLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610

Query: 608 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 667
           A+EPGLF V  H GEVRTAR L +RDA K  LVV V+D+G+PP SAT TL V + D  S 
Sbjct: 611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISD 670

Query: 668 PYLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASV 721
               L    P+    DS LT+YLVVA A+VS +FL  V++ +A RL R  +SR   A+  
Sbjct: 671 ILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGG 730

Query: 722 GRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGRE 781
           G  S+P      H V V G     Q+Y +EV LT DS      F +P + + L+     E
Sbjct: 731 GLASMP----GSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCE 786

Query: 782 VK 783
            K
Sbjct: 787 KK 788


>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score =  627 bits (1618), Expect = e-179
 Identities = 347/772 (44%), Positives = 475/772 (61%), Gaps = 4/772 (0%)

Query: 17  ILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDDKQRLQL 76
           +L+  L ++R E I YSV EE E GS V ++AKDLGL   ELA R  R++S    Q   L
Sbjct: 18  LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77

Query: 77  DRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSPIFPERE 136
           + ++G L+   ++DREELC     CV + ++ LE  V+  + E+ I D+ND+ P F   +
Sbjct: 78  NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137

Query: 137 VLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKYPDLVQD 196
             +K+ EN  PG  FPL  A D DVG N LQ Y ++ N +F +  ++ ++G KYP+LV +
Sbjct: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197

Query: 197 KPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQVLENSPL 256
           + LDREE+    L L A DGG P RSGT  + I+++D NDNAP F    Y V V EN P+
Sbjct: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257

Query: 257 DSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEKIKSYHV 316
            + ++ V A D D G  G V+Y   +  D+I Q F +N ++G+I +   LD+E    Y +
Sbjct: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317

Query: 317 EIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE-NAPETVVSIFRIRDRDSG 375
           ++EA DG GL  +  V++ V+D NDN PE+ ++SLTSS+ E ++P TV+++F + D DSG
Sbjct: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377

Query: 376 ENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRLKTQQN 435
            NG + CSIPDNLPF L+ T  N+Y L+T R LDRE  +EYNIT+  TD GTP L T+ +
Sbjct: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437

Query: 436 ITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDP 495
           I++QV D+NDN P F   SY+ ++ ENN     I S++A D DSG NA++TYSL      
Sbjct: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497

Query: 496 HLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLVLDTND 555
             PL+S VSIN++ G L+AL S DYE  +  +  + ASD G P LSS   + + VLD ND
Sbjct: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557

Query: 556 NSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLF 614
           N P +LYP      +   EL PR+A+ GYLVTKVVAVD DSGQNAWLSY LLK++EPGLF
Sbjct: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617

Query: 615 GVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPE 674
            V  H GEVRTAR L +RDA K RLVV+V+D+G+PP SAT TL V + D        L  
Sbjct: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677

Query: 675 AAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASV-GRCSVPEGPFP 732
             P+    DS LT+YLVVA+A+VS +FL  V + +A++L R  ++  +    S   G   
Sbjct: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPA 737

Query: 733 GHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKE 784
            H V V G     Q+Y +EV LT DS      F +P + + L+     E  E
Sbjct: 738 SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSE 789


>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  627 bits (1618), Expect = e-179
 Identities = 347/772 (44%), Positives = 475/772 (61%), Gaps = 4/772 (0%)

Query: 17  ILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDDKQRLQL 76
           +L+  L ++R E I YSV EE E GS V ++AKDLGL   ELA R  R++S    Q   L
Sbjct: 18  LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77

Query: 77  DRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSPIFPERE 136
           + ++G L+   ++DREELC     CV + ++ LE  V+  + E+ I D+ND+ P F   +
Sbjct: 78  NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137

Query: 137 VLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKYPDLVQD 196
             +K+ EN  PG  FPL  A D DVG N LQ Y ++ N +F +  ++ ++G KYP+LV +
Sbjct: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197

Query: 197 KPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQVLENSPL 256
           + LDREE+    L L A DGG P RSGT  + I+++D NDNAP F    Y V V EN P+
Sbjct: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257

Query: 257 DSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEKIKSYHV 316
            + ++ V A D D G  G V+Y   +  D+I Q F +N ++G+I +   LD+E    Y +
Sbjct: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317

Query: 317 EIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE-NAPETVVSIFRIRDRDSG 375
           ++EA DG GL  +  V++ V+D NDN PE+ ++SLTSS+ E ++P TV+++F + D DSG
Sbjct: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377

Query: 376 ENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRLKTQQN 435
            NG + CSIPDNLPF L+ T  N+Y L+T R LDRE  +EYNIT+  TD GTP L T+ +
Sbjct: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437

Query: 436 ITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDP 495
           I++QV D+NDN P F   SY+ ++ ENN     I S++A D DSG NA++TYSL      
Sbjct: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497

Query: 496 HLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLVLDTND 555
             PL+S VSIN++ G L+AL S DYE  +  +  + ASD G P LSS   + + VLD ND
Sbjct: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557

Query: 556 NSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLF 614
           N P +LYP      +   EL PR+A+ GYLVTKVVAVD DSGQNAWLSY LLK++EPGLF
Sbjct: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617

Query: 615 GVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPE 674
            V  H GEVRTAR L +RDA K RLVV+V+D+G+PP SAT TL V + D        L  
Sbjct: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677

Query: 675 AAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASV-GRCSVPEGPFP 732
             P+    DS LT+YLVVA+A+VS +FL  V + +A++L R  ++  +    S   G   
Sbjct: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPA 737

Query: 733 GHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKE 784
            H V V G     Q+Y +EV LT DS      F +P + + L+     E  E
Sbjct: 738 SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSE 789


>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  627 bits (1617), Expect = e-179
 Identities = 358/782 (45%), Positives = 479/782 (61%), Gaps = 12/782 (1%)

Query: 11  RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
           R VL   L+  L + R   IRYSV EETE G  V +++KDL L   ELA R  R++S   
Sbjct: 12  RLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGR 71

Query: 71  KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
            Q   L+ ++G L+   ++DREELC     C+++F+V +E  V+ +  E+ + DIND +P
Sbjct: 72  TQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAP 131

Query: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
            F    + +KI E + PG  +PL  A D DVG N LQ Y +SPN HF +  +    G   
Sbjct: 132 KFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAIN 191

Query: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
           P+LV ++ LDREE     L L A DGG P RS TV + + ++D NDNAP F    Y V+V
Sbjct: 192 PELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKV 251

Query: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
           LEN P  + ++   A D+D G  G V+Y  ++ +++    F +NE TGEI   K LD+E+
Sbjct: 252 LENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEE 311

Query: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPE-TVVSIFRI 369
              Y +EI+A DGGGL G   V+I V DVNDN PE+ I+SL S + E+AP+ TV+ +F  
Sbjct: 312 CSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371

Query: 370 RDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPR 429
            DRDSG+NG+++CSI +NL F L+ + +++Y L+T + LDRE ++EYNIT+  TD GTP 
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPP 431

Query: 430 LKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL 489
           L T+ +IT+QV+D+NDN PAF+Q SY++++ ENN+    I SV A D DS  N++V YSL
Sbjct: 432 LSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSL 491

Query: 490 LPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVL 549
                   PL++ VSIN+D G L+AL S DYE  +  + +V ASD GSP LSS   +R+ 
Sbjct: 492 AEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLF 551

Query: 550 VLDTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 608
           VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+L KA
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKA 611

Query: 609 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 668
           +EPGLF V  H GEVRTAR L +RDA K  LVV V+D+G+PP SAT TL V + D     
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDI 671

Query: 669 YLPLPE-AAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRL-----CRRSRAASVG 722
              L     PA  +A  LT+YLVVA+A VS +FL  V+  +A+RL         RA S G
Sbjct: 672 LADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDG 731

Query: 723 RCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREV 782
              VP      H V V G     Q+Y  E  LT DS      F +P + + L+     E 
Sbjct: 732 LAGVP----TSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLISQQSCEK 787

Query: 783 KE 784
            E
Sbjct: 788 NE 789


>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
           [Homo sapiens]
          Length = 828

 Score =  627 bits (1617), Expect = e-179
 Identities = 358/782 (45%), Positives = 479/782 (61%), Gaps = 12/782 (1%)

Query: 11  RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
           R VL   L+  L + R   IRYSV EETE G  V +++KDL L   ELA R  R++S   
Sbjct: 12  RLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGR 71

Query: 71  KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
            Q   L+ ++G L+   ++DREELC     C+++F+V +E  V+ +  E+ + DIND +P
Sbjct: 72  TQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAP 131

Query: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
            F    + +KI E + PG  +PL  A D DVG N LQ Y +SPN HF +  +    G   
Sbjct: 132 KFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAIN 191

Query: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
           P+LV ++ LDREE     L L A DGG P RS TV + + ++D NDNAP F    Y V+V
Sbjct: 192 PELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKV 251

Query: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
           LEN P  + ++   A D+D G  G V+Y  ++ +++    F +NE TGEI   K LD+E+
Sbjct: 252 LENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEE 311

Query: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPE-TVVSIFRI 369
              Y +EI+A DGGGL G   V+I V DVNDN PE+ I+SL S + E+AP+ TV+ +F  
Sbjct: 312 CSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371

Query: 370 RDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPR 429
            DRDSG+NG+++CSI +NL F L+ + +++Y L+T + LDRE ++EYNIT+  TD GTP 
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPP 431

Query: 430 LKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL 489
           L T+ +IT+QV+D+NDN PAF+Q SY++++ ENN+    I SV A D DS  N++V YSL
Sbjct: 432 LSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSL 491

Query: 490 LPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVL 549
                   PL++ VSIN+D G L+AL S DYE  +  + +V ASD GSP LSS   +R+ 
Sbjct: 492 AEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLF 551

Query: 550 VLDTNDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 608
           VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+L KA
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKA 611

Query: 609 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 668
           +EPGLF V  H GEVRTAR L +RDA K  LVV V+D+G+PP SAT TL V + D     
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDI 671

Query: 669 YLPLPE-AAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRL-----CRRSRAASVG 722
              L     PA  +A  LT+YLVVA+A VS +FL  V+  +A+RL         RA S G
Sbjct: 672 LADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDG 731

Query: 723 RCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREV 782
              VP      H V V G     Q+Y  E  LT DS      F +P + + L+     E 
Sbjct: 732 LAGVP----TSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLISQQSCEK 787

Query: 783 KE 784
            E
Sbjct: 788 NE 789


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,699,465
Number of Sequences: 37866
Number of extensions: 1445295
Number of successful extensions: 10584
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3219
Number of HSP's gapped (non-prelim): 696
length of query: 795
length of database: 18,247,518
effective HSP length: 110
effective length of query: 685
effective length of database: 14,082,258
effective search space: 9646346730
effective search space used: 9646346730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.

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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.