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Search of human proteins with 9256606
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9256606 protocadherin beta 12 precursor [Homo sapiens]
(795 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9256606 protocadherin beta 12 precursor [Homo sapiens] 1567 0.0
gi|9256604 protocadherin beta 11 precursor [Homo sapiens] 1385 0.0
gi|9256608 protocadherin beta 14 precursor [Homo sapiens] 1201 0.0
gi|9256614 protocadherin beta 3 precursor [Homo sapiens] 1172 0.0
gi|11036656 protocadherin beta 7 precursor [Homo sapiens] 1172 0.0
gi|9256616 protocadherin beta 4 precursor [Homo sapiens] 1168 0.0
gi|14195605 protocadherin beta 16 precursor [Homo sapiens] 1163 0.0
gi|9256612 protocadherin beta 2 precursor [Homo sapiens] 1163 0.0
gi|7661662 protocadherin beta 5 precursor [Homo sapiens] 1161 0.0
gi|9256610 protocadherin beta 15 precursor [Homo sapiens] 1150 0.0
gi|11036654 protocadherin beta 13 precursor [Homo sapiens] 1148 0.0
gi|11276081 protocadherin beta 8 precursor [Homo sapiens] 1140 0.0
gi|14195616 protocadherin beta 9 precursor [Homo sapiens] 1137 0.0
gi|9256602 protocadherin beta 10 precursor [Homo sapiens] 1125 0.0
gi|9256618 protocadherin beta 6 precursor [Homo sapiens] 1113 0.0
gi|14195607 protocadherin beta 1 precursor [Homo sapiens] 773 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 631 0.0
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs... 631 0.0
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs... 630 e-180
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 630 e-180
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 627 e-179
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs... 627 e-179
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 621 e-178
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 621 e-178
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 620 e-177
gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precurs... 620 e-177
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs... 618 e-177
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 618 e-177
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 617 e-176
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs... 617 e-176
>gi|9256606 protocadherin beta 12 precursor [Homo sapiens]
Length = 795
Score = 1567 bits (4058), Expect = 0.0
Identities = 795/795 (100%), Positives = 795/795 (100%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS
Sbjct: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
Query: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE
Sbjct: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
Query: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV
Sbjct: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
Query: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP
Sbjct: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
Query: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD
Sbjct: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
Query: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT
Sbjct: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
Query: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT
Sbjct: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
Query: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS
Sbjct: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
Query: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA
Sbjct: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG
Sbjct: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
Query: 781 SEVEENPPFQNNLGF 795
SEVEENPPFQNNLGF
Sbjct: 781 SEVEENPPFQNNLGF 795
>gi|9256604 protocadherin beta 11 precursor [Homo sapiens]
Length = 797
Score = 1385 bits (3585), Expect = 0.0
Identities = 706/795 (88%), Positives = 736/795 (92%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
MEN G T QIRQVLL FVLLGMSQAGSET +F V EE+QSGSFVGNLAK LGL+V ELS
Sbjct: 1 MENQGTRTQQIRQVLLLFVLLGMSQAGSETWSFSVAEEMQSGSFVGNLAKDLGLKVRELS 60
Query: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
SRGARVVSND K+ LQLD NTGDLLL E LDREELCGS EPCVL+ QVLM+NPTQFLQIE
Sbjct: 61 SRGARVVSNDKKQRLQLDINTGDLLLSETLDREELCGSIEPCVLHLQVLMQNPTQFLQIE 120
Query: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
LQVRDINDHSP+F EK+MLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTI+PNSHFH+
Sbjct: 121 LQVRDINDHSPIFSEKQMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTISPNSHFHI 180
Query: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
K+RV PDNRKYPELVLDKALDYEE PELSFIL+ALDGGSPPRSGTALVRVVVVDINDNSP
Sbjct: 181 KMRVIPDNRKYPELVLDKALDYEELPELSFILSALDGGSPPRSGTALVRVVVVDINDNSP 240
Query: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
EFEQAFYEVKI ENSILGSL++ VSAWDLDSGTN E+ YTFSHASEDIRKTFEINQKSG+
Sbjct: 241 EFEQAFYEVKIRENSILGSLILIVSAWDLDSGTNGEICYTFSHASEDIRKTFEINQKSGE 300
Query: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
ITL APLDFE IESYSIIIQATDGGGLFGKSTV I V+DVNDNAPEITVSSITSPIPENT
Sbjct: 301 ITLRAPLDFETIESYSIIIQATDGGGLFGKSTVIIHVIDVNDNAPEITVSSITSPIPENT 360
Query: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
PETVVMVF I+D DSGDNG++VCSIPED+PFVLKSSV NYYTLETERPLDRES AEYNIT
Sbjct: 361 PETVVMVFSIQDIDSGDNGRIVCSIPEDLPFVLKSSVENYYTLETERPLDRESTAEYNIT 420
Query: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
ITVTDLG PRLKTEHN TVLVSDVNDNAP FTQTSY LFVRENNSPALHIGS+SATDRDS
Sbjct: 421 ITVTDLGIPRLKTEHNTTVLVSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
GTNAQVNYSLLP QD HLPLASLVSIN DNGHLFALRSLDYEALQ F FRVGATD GSPA
Sbjct: 481 GTNAQVNYSLLPPQDLHLPLASLVSINTDNGHLFALRSLDYEALQAFDFRVGATDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATL V
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLQV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
VG CSVP+GPFPGHLVDVSGTGTLSQSY YEVC+TGGS +N+FKFLKP+IPN + G
Sbjct: 721 SVGSCSVPKGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSETNEFKFLKPVIPNIQAKGLG 780
Query: 781 SEVEENPPFQNNLGF 795
EEN F+N+ GF
Sbjct: 781 KNSEENSTFRNSFGF 795
>gi|9256608 protocadherin beta 14 precursor [Homo sapiens]
Length = 798
Score = 1201 bits (3107), Expect = 0.0
Identities = 604/794 (76%), Positives = 691/794 (87%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
ME GA L+ RQVL+F VLLG+S+AG+E+ ++ V EE + GSFV NLA+ LGL V ELS
Sbjct: 1 MEIRGALDLRKRQVLIFLVLLGLSRAGTESAHYSVAEETEIGSFVANLARDLGLGVEELS 60
Query: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
SR ARVVS+DNK+ L LD TG+LLL E LDR+ELCGS EPCVL+FQV+++NP QF + E
Sbjct: 61 SREARVVSDDNKKYLHLDLLTGNLLLNEKLDRDELCGSTEPCVLHFQVVLENPLQFFRFE 120
Query: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
L V+DINDHSP FL+KE+L++I E + VGA FL+ESA+DLDVG N++++YTI+PNSHF++
Sbjct: 121 LCVKDINDHSPTFLDKEILIKISEGTTVGATFLMESAQDLDVGSNSLQNYTISPNSHFYI 180
Query: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
KI + D + YPELVLD+ALDYE+ EL LTA+DGGSPP+SGT LV + V+DINDN+P
Sbjct: 181 KIPDSSDRKIYPELVLDRALDYEQEAELRLTLTAVDGGSPPKSGTTLVLIKVLDINDNAP 240
Query: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
EF Q+ YEV++ E+ LGS + T+SA DLD+G ++SYTF HASEDIRKTFEIN SG+
Sbjct: 241 EFPQSLYEVQVPEDRPLGSWIATISAKDLDAGNYGKISYTFFHASEDIRKTFEINPISGE 300
Query: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
+ L +PLDFE I+SY+I IQATDGGGL GK T+ ++VMD+NDN PE+T+SSIT IPEN
Sbjct: 301 VNLRSPLDFEVIQSYTINIQATDGGGLSGKCTLLVKVMDINDNPPEVTISSITKRIPENA 360
Query: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
ET+V +F I D+DSGDNG+M+CSI +++PF LK + N++TL +E+ LDRES+AEYNIT
Sbjct: 361 SETLVALFSILDQDSGDNGRMICSIQDNLPFFLKPTFKNFFTLVSEKALDRESQAEYNIT 420
Query: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
ITVTDLGTPRLKTE+NITVL+SDVNDNAP FTQTSY LFVRENNSPALHIGS+SATDRDS
Sbjct: 421 ITVTDLGTPRLKTEYNITVLLSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
GTNAQVNYSLLP QD HLPLASLVSINADNGHLFALRSLDYEALQ F+FRVGATD GSPA
Sbjct: 481 GTNAQVNYSLLPPQDRHLPLASLVSINADNGHLFALRSLDYEALQEFEFRVGATDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
VGRCSVPEGPFPGHLVDVSGTGTLSQSY YEVC+TGGS +N+FKFLKPIIPNF TG
Sbjct: 721 SVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFQVHDTG 780
Query: 781 SEVEENPPFQNNLG 794
+ E F+N+ G
Sbjct: 781 RNMGEIENFRNSFG 794
>gi|9256614 protocadherin beta 3 precursor [Homo sapiens]
Length = 796
Score = 1172 bits (3032), Expect = 0.0
Identities = 594/795 (74%), Positives = 672/795 (84%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
ME GG L+ RQVLL FV LG S AGSE+ + V EE + G + NLAK LGL V EL+
Sbjct: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
Query: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
+RGA+VVS NK+ QL TGDLLL E LDREELCG EPC+L+FQ+L++NP QF+ E
Sbjct: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
Query: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
L++ D+NDHSPVF E EM L+I E++ G V L +A+DLDVG N++++YTI PNSHFHV
Sbjct: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
Query: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
R D RKYPELVLDKALD EE+PELS LTALDGGSPPRSGTA + + V+DINDN+P
Sbjct: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
Query: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
EF Q YEV +LEN+ + S++VTVSA DLD+G+ +SY F HASE+IRKTF++N +GD
Sbjct: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
Query: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
+ L L+FEAI SY + I+A DGGGL GKSTV +QV+DVNDN PE+T+SS+ SPIPEN+
Sbjct: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
Query: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
ETV+ VF + D DSGDNG+++CSI ++PF LK SV N+YTL +E LDRE+R+EYNIT
Sbjct: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
Query: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
IT+TDLGTPRLKT++NITVLVSDVNDNAPAFTQ SY LFVRENNSPALHIGS+SATDRDS
Sbjct: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
GTNAQV YSLLP QDPHLPL+SLVSINADNGHLFALRSLDYEALQ F+FRVGATD GSPA
Sbjct: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
VGRCSVPEGPFPG +VDVSGTGTLSQSY YEVC+TGGS +N+FKFLKPIIPNF+ Q
Sbjct: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
Query: 781 SEVEENPPFQNNLGF 795
E NP F+ + F
Sbjct: 781 RVSEANPSFRKSFEF 795
>gi|11036656 protocadherin beta 7 precursor [Homo sapiens]
Length = 793
Score = 1172 bits (3031), Expect = 0.0
Identities = 594/787 (75%), Positives = 676/787 (85%), Gaps = 2/787 (0%)
Query: 9 LQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVS 68
+Q RQVL V LGMS AG+E + V EE + G+F+ NLAK LGL V EL +RG R+VS
Sbjct: 9 VQKRQVLFLCVFLGMSWAGAEPLRYFVAEETERGTFLTNLAKDLGLGVGELRARGTRIVS 68
Query: 69 NDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDIND 128
+ N + L L + TGDLLL E LDREELCG EPCVL FQ+L++ P Q + EL VRDIND
Sbjct: 69 DQNMQILLLSSLTGDLLLNEKLDREELCGPREPCVLPFQLLLEKPFQIFRAELWVRDIND 128
Query: 129 HSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDN 188
H+PVFL++E+ L+I E++ GA FLLESA+D DVG N++ +YTI+PN++FH+ + + +
Sbjct: 129 HAPVFLDREISLKILESTTPGAAFLLESAQDSDVGTNSLSNYTISPNAYFHINVHDSGEG 188
Query: 189 RKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 248
YPELVL++ LD EE PE S LTALDGGSPPRSGTALVR++V+D+NDN+P+F ++ Y+
Sbjct: 189 NIYPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYK 248
Query: 249 VKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLD 308
V++ ENS +GS+VV+VSA DLD+G+N E++Y FS+A+E I KTF+IN SG + L A LD
Sbjct: 249 VQVPENSPVGSMVVSVSARDLDTGSNGEIAYAFSYATERILKTFQINPTSGSLHLKAQLD 308
Query: 309 FEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPETVVMVF 368
+EAI++Y++ IQA DGGGL GK TV + V D+NDN PE+ +SS+TSPI EN+PETVV VF
Sbjct: 309 YEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLTSPIAENSPETVVAVF 368
Query: 369 RIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGT 428
RIRDRDSG+NGK VCSI +D+PF+LK SV N+YTL TE+PLDRE EYNITITVTDLGT
Sbjct: 369 RIRDRDSGNNGKTVCSIQDDVPFILKPSVENFYTLVTEKPLDRERNTEYNITITVTDLGT 428
Query: 429 PRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNY 488
PRLKTEHNITVLVSDVNDNAPAFTQTSY LFVRENNSPAL IGS+SATDRDSGTNAQV Y
Sbjct: 429 PRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALPIGSVSATDRDSGTNAQVIY 488
Query: 489 SLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVR 548
SLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQ F+FRVGATD GSPALSSEALVR
Sbjct: 489 SLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVR 548
Query: 549 VLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608
VLVLDANDNSPFVLYPLQN SAPCTE +P AAEPGYLVTKVVAVDGDSGQNAWLSYQLLK
Sbjct: 549 VLVLDANDNSPFVLYPLQNSSAPCTEPLPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608
Query: 609 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 668
ATEPGLFGVWAHNGEVRTARLLSERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGFSQ
Sbjct: 609 ATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 668
Query: 669 PYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVP 728
PYL LPEAAP QA+SLTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAAPVGRCSVP
Sbjct: 669 PYLRLPEAAP--DQANSLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAAPVGRCSVP 726
Query: 729 EGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEENPP 788
EGPFP HLVD+SGTGTLSQSY YEVC+TGGS +N+FKFLKPIIPN LPQSTG EVEEN P
Sbjct: 727 EGPFPRHLVDLSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNLLPQSTGREVEENRP 786
Query: 789 FQNNLGF 795
FQNNLGF
Sbjct: 787 FQNNLGF 793
>gi|9256616 protocadherin beta 4 precursor [Homo sapiens]
Length = 795
Score = 1168 bits (3022), Expect = 0.0
Identities = 588/784 (75%), Positives = 670/784 (85%)
Query: 12 RQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
RQVL F +++ +SQ E + V+EE +SGSFV +LAK LGL + EL+SR ARV+S+D+
Sbjct: 11 RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
K+ LQLD TGDLLLRE LDREELCG EPCVL+FQV ++ P QF Q EL ++DINDHSP
Sbjct: 71 KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
+F E+E+LL+I ENS G +F L A+DLDVG N ++ YTI+PNSHFH+ R + + +KY
Sbjct: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
P+LV DK LD EE+PE S L ALDGGSPPRSGT +VR++++DINDN+PEF Y V++
Sbjct: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
LENS L S +V V A D+D+G +SY AS++I++TF IN+ +G+I L LDFE
Sbjct: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPETVVMVFRIR 371
I+SY + I+ATDGGGL GK TV I+V+DVNDN PE+ +SS+TS IPEN PETVV +FRIR
Sbjct: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRIR 370
Query: 372 DRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRL 431
DRDSG+NGKM+CSIP+++PF+LK ++ N+YTL TERPLDRE+ AEYNITI VTDLGTPRL
Sbjct: 371 DRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRL 430
Query: 432 KTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLL 491
KT+ NITV VSDVNDNAPAFTQTSY LFVRENNSPALHIGS+SATDRDSGTNAQV YSLL
Sbjct: 431 KTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 490
Query: 492 PSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLV 551
P QDPHLPLASLVSINADNGHLFALRSLDYEALQ F+FRVGA+D GSPALSSEALVRVLV
Sbjct: 491 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLV 550
Query: 552 LDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611
LD NDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 551 LDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
Query: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671
PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL
Sbjct: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
Query: 672 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVPEGP 731
PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA VGRCSVPEGP
Sbjct: 671 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 730
Query: 732 FPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEENPPFQN 791
FPGHLVDVSGTGTLSQSY YEVC+TG S + +FKFLKPI PN L Q TG EV+ENP F+N
Sbjct: 731 FPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKFRN 790
Query: 792 NLGF 795
+L F
Sbjct: 791 SLVF 794
>gi|14195605 protocadherin beta 16 precursor [Homo sapiens]
Length = 776
Score = 1163 bits (3009), Expect = 0.0
Identities = 587/776 (75%), Positives = 660/776 (85%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
ME G + RQVL+FFVLL +S AG+E G++ V+EE + GSFV NL K LGL ++E+S
Sbjct: 1 MEIGWMHNRRQRQVLVFFVLLSLSGAGAELGSYSVVEETERGSFVANLGKDLGLGLTEMS 60
Query: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
+R AR++S NK+ LQL TGDLL+ E LDREELCG EPC+L+FQVLM+NP + Q E
Sbjct: 61 TRKARIISQGNKQHLQLKAQTGDLLINEKLDREELCGPTEPCILHFQVLMENPLEIFQAE 120
Query: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
L+V DINDHSP+F EKEM+L+IPENSP+G F L A DLDVG N V++Y I+P+SHF V
Sbjct: 121 LRVIDINDHSPMFTEKEMILKIPENSPLGTEFPLNHALDLDVGSNNVQNYKISPSSHFRV 180
Query: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
I D RKYPELVLDK LD EE P+L LTALDGGSPPRSGTA VR+ VVDINDN+P
Sbjct: 181 LIHEFRDGRKYPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAP 240
Query: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
EFEQ Y+V+I ENS LGSLV TVSA DLD G N ++SYT SEDI KT E+N +G+
Sbjct: 241 EFEQPIYKVQIPENSPLGSLVATVSARDLDGGANGKISYTLFQPSEDISKTLEVNPMTGE 300
Query: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
+ L +DFE + SY + I+ATDGGGL GK T+ +QV+DVNDN P++T+S++TSPIPEN+
Sbjct: 301 VRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALTSPIPENS 360
Query: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
PE VV VF + D DSG+NGK + SI ED+PF+LK SV N+YTL TER LDRE+RAEYNIT
Sbjct: 361 PEIVVAVFSVSDPDSGNNGKTISSIQEDLPFLLKPSVKNFYTLVTERALDREARAEYNIT 420
Query: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
+TVTD+GTPRLKTEHNITV +SDVNDNAP FTQTSY LFVRENNSPALHIGS+SATDRDS
Sbjct: 421 LTVTDMGTPRLKTEHNITVQISDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
GTNAQV YSLLP QDPHLPLASLVSINADNGHLFALRSLDYEAL+ F+FRV ATD GSPA
Sbjct: 481 GTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALREFEFRVSATDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAK RLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQP+LPLPEAAP Q QA+SLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPFLPLPEAAPGQTQANSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLP 776
VGRCS+PEGPFPG LVDVSGTGTLSQSY YEVC+TGGS +++FKFLKPIIPNF P
Sbjct: 721 SVGRCSMPEGPFPGRLVDVSGTGTLSQSYQYEVCLTGGSETSEFKFLKPIIPNFSP 776
>gi|9256612 protocadherin beta 2 precursor [Homo sapiens]
Length = 798
Score = 1163 bits (3008), Expect = 0.0
Identities = 588/784 (75%), Positives = 664/784 (84%)
Query: 12 RQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
RQVL+FFVLLG++QA + ++ V EE +SGSFV NL K LGLE+ EL+ RGARVVS
Sbjct: 14 RQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSKGK 73
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
K LQ D TGDLLL E LDREELCG EPCVL FQVL++NP QF Q EL++RD+NDHSP
Sbjct: 74 KMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDHSP 133
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
VFL+KE+LL+IPE+ G FL+E A+DLDVG N++++YTI+PN HFH+ ++ + D
Sbjct: 134 VFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGIIL 193
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
P+LVL++ALD EE+PE+ LTALDGGSPPRSGTALVR+ VVDINDN PEF + YEV+I
Sbjct: 194 PQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEVQI 253
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
E+S +GS V VSA DLD GTN E+SY FS ASEDIRKTF ++ KSG++ L LDFE+
Sbjct: 254 PEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDFES 313
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPETVVMVFRIR 371
I++Y++ IQATDGGGL G V +QVMD+NDN PE+T+S++ + IPEN +T++ VF +
Sbjct: 314 IQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIAVFSVS 373
Query: 372 DRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRL 431
D DSGDNG+MVCSI +D+PF LK SV N+YTL LDRE+R+EYNITITVTD GTPRL
Sbjct: 374 DPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTPRL 433
Query: 432 KTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLL 491
KTEHNITVLVSDVNDNAPAFTQTSY LFVRENNSPALHIGS+SATDRDSGTNAQV YSLL
Sbjct: 434 KTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 493
Query: 492 PSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLV 551
P QDPHLPLASLVSINADNGHLFAL+SLDYEALQ F+FRVGA D GSPALSSEALVRVLV
Sbjct: 494 PPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRVLV 553
Query: 552 LDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611
LDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 554 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 613
Query: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671
PGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL
Sbjct: 614 PGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 673
Query: 672 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVPEGP 731
LPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA VGRCSVPEGP
Sbjct: 674 LLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 733
Query: 732 FPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEENPPFQN 791
FPG +VDVSGTGTLSQSY YEVC+TGGS +N+FKFLKPIIPNF+ Q E NP F+
Sbjct: 734 FPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPSFRK 793
Query: 792 NLGF 795
+ F
Sbjct: 794 SFEF 797
>gi|7661662 protocadherin beta 5 precursor [Homo sapiens]
Length = 795
Score = 1161 bits (3003), Expect = 0.0
Identities = 589/794 (74%), Positives = 667/794 (84%), Gaps = 1/794 (0%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
ME A T Q RQV+ +LL + +AGSE + + EE +SG V NLAK LGL V EL+
Sbjct: 1 METALAKTPQKRQVMFLAILLLLWEAGSEAVRYSIPEETESGYSVANLAKDLGLGVGELA 60
Query: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
+RGAR+ NKE LQLD TG+LLL E LDRE +CG+ EPC+L+FQ+L++NP QF Q +
Sbjct: 61 TRGARMHYKGNKELLQLDIKTGNLLLYEKLDREVMCGATEPCILHFQLLLENPVQFFQTD 120
Query: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
LQ+ DINDH+P F EKEMLL+IPE++ G VF L+ A+D D+G N V++YTI+PNSHFHV
Sbjct: 121 LQLTDINDHAPEFPEKEMLLKIPESTQPGTVFPLKIAQDFDIGSNTVQNYTISPNSHFHV 180
Query: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
D RKYPELVLDKALD EERPELS LTALDGG+PPRSGT +R+VV+D NDN+P
Sbjct: 181 ATHNRGDGRKYPELVLDKALDREERPELSLTLTALDGGAPPRSGTTTIRIVVLDNNDNAP 240
Query: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
EF Q+FYEV++ ENS L SLVV VSA DLD+G ++Y E + + F I++K+ +
Sbjct: 241 EFLQSFYEVQVPENSPLNSLVVVVSARDLDAGAYGSVAYALFQGDE-VTQPFVIDEKTAE 299
Query: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
I L LDFEA Y++ I ATDGGGL GK TV I+V+DVNDNAPE+T+S+++SP PEN
Sbjct: 300 IRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENA 359
Query: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
PETVV VF + D DSGDNG+M+CSI D+PF+LK ++ N+YTL T+R LDRES+AEYNIT
Sbjct: 360 PETVVAVFSVSDPDSGDNGRMICSIQNDLPFLLKPTLKNFYTLVTQRTLDRESQAEYNIT 419
Query: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
ITVTD+GTPRLKTEHNITVLVSDVNDNAPAFTQTSY LFVRENNSPALHIGS+SATDRDS
Sbjct: 420 ITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS 479
Query: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
GTNAQV YSLLP Q+PHL LASLVSINADNGHLFALRSLDYEALQ F+FRVGATD GSPA
Sbjct: 480 GTNAQVTYSLLPPQNPHLRLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 539
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNA
Sbjct: 540 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 599
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLF +WAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 600 WLSYQLLKATEPGLFSMWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 659
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 660 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 719
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
VGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVC+TG S + +FKFLKPIIPN LPQ G
Sbjct: 720 SVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCLTGDSGAGEFKFLKPIIPNLLPQGAG 779
Query: 781 SEVEENPPFQNNLG 794
E+ + F+N+ G
Sbjct: 780 EEIGKTAAFRNSFG 793
>gi|9256610 protocadherin beta 15 precursor [Homo sapiens]
Length = 787
Score = 1150 bits (2974), Expect = 0.0
Identities = 581/784 (74%), Positives = 657/784 (83%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
ME G + RQVL+ +LL ++ AG E + VMEE + GSFV NLA LGL V EL+
Sbjct: 1 MEPAGERFPEQRQVLILLLLLEVTLAGWEPRRYSVMEETERGSFVANLANDLGLGVGELA 60
Query: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
RGARVVS DN++ LQLD TG L+L E LDRE+LCG EPC+++FQVL+K P + + E
Sbjct: 61 ERGARVVSEDNEQGLQLDLQTGQLILNEKLDREKLCGPTEPCIMHFQVLLKKPLEVFRAE 120
Query: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
L V DINDHSP F E+EM L+IPE S +G VF L+ A+DLDVG N V++Y I+PNSHFHV
Sbjct: 121 LLVTDINDHSPEFPEREMTLKIPETSSLGTVFPLKKARDLDVGSNNVQNYNISPNSHFHV 180
Query: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
R D RKYPELVLD LD EE+ EL LTA+DGGSPPRSGT + ++V+D NDN+P
Sbjct: 181 STRTRGDGRKYPELVLDTELDREEQAELRLTLTAVDGGSPPRSGTVQILILVLDANDNAP 240
Query: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
EF QA YEV++ ENS +GSLVV VSA DLD+GTN E+SY+ ++S++I K FE++ SG+
Sbjct: 241 EFVQALYEVQVPENSPVGSLVVKVSARDLDTGTNGEISYSLYYSSQEIDKPFELSSLSGE 300
Query: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
I L LDFE + SY + I+A+DGGGL GK +V ++V+DVNDN PE+++SS+TSPIPEN+
Sbjct: 301 IRLIKKLDFETMSSYDLDIEASDGGGLSGKCSVSVKVLDVNDNFPELSISSLTSPIPENS 360
Query: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
PET V +FRIRDRDSG+NGKM+CSI +D+PF LK SV N+Y L TE LDRE+RAEYNIT
Sbjct: 361 PETEVALFRIRDRDSGENGKMICSIQDDVPFKLKPSVENFYRLVTEGALDRETRAEYNIT 420
Query: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
IT+TDLGTPRLKTE +ITVLVSDVNDNAPAFTQTSY LFVRENNSPALHIGS+SATDRDS
Sbjct: 421 ITITDLGTPRLKTEQSITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
GTNAQV YSLLP +DPHLPL SLVSIN DNGHLFAL+SLDYEALQ F+FRVGATD G PA
Sbjct: 481 GTNAQVTYSLLPPRDPHLPLTSLVSINTDNGHLFALQSLDYEALQAFEFRVGATDRGFPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERD AKHRLVVLVKDNGEPPRSATATL V
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDVAKHRLVVLVKDNGEPPRSATATLQV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSV LFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVFLFVAVRLCRRSRAA 720
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
VGRCSVPEGPFPGHLVDVSGTGTLSQSY YEVC+TGGS SN FKFLKPI PN + Q +
Sbjct: 721 SVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSESNDFKFLKPIFPNIVSQDSR 780
Query: 781 SEVE 784
+ E
Sbjct: 781 RKSE 784
>gi|11036654 protocadherin beta 13 precursor [Homo sapiens]
Length = 798
Score = 1148 bits (2970), Expect = 0.0
Identities = 591/796 (74%), Positives = 664/796 (83%), Gaps = 2/796 (0%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGS-ETGNFLVMEELQSGSFVGNLAKTLGLEVSEL 59
ME G + RQVL F+LLG+S AG+ E ++ V+EE + SFV NLAK LGLE E
Sbjct: 1 MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREF 60
Query: 60 SSRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQI 119
S RG RVVS NK LQL+ T DLLL E LDRE+LCG EPCVL FQVL+++P +F Q
Sbjct: 61 SRRGVRVVSRGNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQA 120
Query: 120 ELQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFH 179
ELQV DINDHSPVFL+K+ML+++ E+SP G F L++A+DLDVG N +++Y I+PNS+F
Sbjct: 121 ELQVIDINDHSPVFLDKQMLVKVSESSPPGTTFPLKNAEDLDVGQNNIENYIISPNSYFR 180
Query: 180 VKIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNS 239
V R D RKYPELVLDKALD EE EL LTALDGGSPPRSGTA V + V+D+NDN+
Sbjct: 181 VLTRKRSDGRKYPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNA 240
Query: 240 PEFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSG 299
PEFEQ FY V+I E+S +G LVV VSA D+D+G N E+SY+ ASE+I KTF+IN +G
Sbjct: 241 PEFEQPFYRVQISEDSPVGFLVVKVSATDVDTGVNGEISYSLFQASEEIGKTFKINPLTG 300
Query: 300 DITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPEN 359
+I L LDFE ++SY + I+A D G GK TV IQV+DVND+APE+T+S+ TSPIPEN
Sbjct: 301 EIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPEN 360
Query: 360 TPETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNI 419
PETVV +F + D DSG+NGK+ CSI ED+PF+LKS+ N+YTL TERPLDRESRAEYNI
Sbjct: 361 APETVVALFSVSDLDSGENGKISCSIQEDLPFLLKSA-ENFYTLLTERPLDRESRAEYNI 419
Query: 420 TITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRD 479
TITVTDLGTP L T+ N+TVL++DVNDNAPAFTQTSY LFVRENNSPALHI S+SATDRD
Sbjct: 420 TITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRENNSPALHIRSVSATDRD 479
Query: 480 SGTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSP 539
SGTNAQV YSLLP QDPHLPL SLVSINADNGHLFALRSLDYEALQGFQFRVGA+DHGSP
Sbjct: 480 SGTNAQVTYSLLPPQDPHLPLTSLVSINADNGHLFALRSLDYEALQGFQFRVGASDHGSP 539
Query: 540 ALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQN 599
ALSSEALVRV+VLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQN
Sbjct: 540 ALSSEALVRVVVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQN 599
Query: 600 AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH 659
AWLSYQLLKATE GLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH
Sbjct: 600 AWLSYQLLKATELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH 659
Query: 660 VLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA 719
VLLVDGFSQPYLPLPEAAP QAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA
Sbjct: 660 VLLVDGFSQPYLPLPEAAPTQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA 719
Query: 720 APVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQST 779
A VGRC VPEGP PGHLVD+SGT TLSQSY YEVC+ GGS +N+FKFLKPIIPNF PQ
Sbjct: 720 ASVGRCLVPEGPLPGHLVDMSGTRTLSQSYQYEVCLAGGSGTNEFKFLKPIIPNFPPQCP 779
Query: 780 GSEVEENPPFQNNLGF 795
G E++ N F NN GF
Sbjct: 780 GKEIQGNSTFPNNFGF 795
>gi|11276081 protocadherin beta 8 precursor [Homo sapiens]
Length = 801
Score = 1140 bits (2949), Expect = 0.0
Identities = 582/796 (73%), Positives = 661/796 (83%), Gaps = 1/796 (0%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGS-ETGNFLVMEELQSGSFVGNLAKTLGLEVSEL 59
ME G + RQVL F+LLG+S AG+ E ++ V+EE + SFV NLAK LGLE E
Sbjct: 1 MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREF 60
Query: 60 SSRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQI 119
S RG RVVS NK LQL+ T DLLL E LDRE+LCG EPCVL FQVL+++P +F Q
Sbjct: 61 SRRGVRVVSRGNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQA 120
Query: 120 ELQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFH 179
ELQV DINDHSPVFL+K+ML+++ E+SP G F L++A+DLD+G N +++Y I+PNS+F
Sbjct: 121 ELQVIDINDHSPVFLDKQMLVKVSESSPPGTAFPLKNAEDLDIGQNNIENYIISPNSYFR 180
Query: 180 VKIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNS 239
V R D RKYPELVLD ALD EE EL LTALDGGSPPRSGTA V + VVD+NDN+
Sbjct: 181 VLTRKRSDGRKYPELVLDNALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVVDVNDNA 240
Query: 240 PEFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSG 299
PEF+Q FY V+I E+S + LVV VSA D+D+G N E+SY+ AS++I KTF+++ +G
Sbjct: 241 PEFQQPFYRVQISEDSPISFLVVKVSATDVDTGVNGEISYSLFQASDEISKTFKVDFLTG 300
Query: 300 DITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPEN 359
+I L LDFE +SY + I+A D GG GK TV IQV+DVND+APE+T+S+ TSPIPEN
Sbjct: 301 EIRLKKQLDFEKFQSYEVNIEARDAGGFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPEN 360
Query: 360 TPETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNI 419
PETVV +F + D DSG+NGK+ CSI ED+PF+LKSSV N+YTL TE PLDRESRAEYN+
Sbjct: 361 APETVVALFSVSDLDSGENGKISCSIQEDLPFLLKSSVGNFYTLLTETPLDRESRAEYNV 420
Query: 420 TITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRD 479
TITVTDLGTPRL T N+TVLVSDVNDNAPAFTQTSY LFVRENNSPALHIGS+SATDRD
Sbjct: 421 TITVTDLGTPRLTTHLNMTVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRD 480
Query: 480 SGTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSP 539
SGTNAQV YSLLP QDPHLPLASLVSIN DNGHLFALRSLDYEALQ F+FRVGA+D GSP
Sbjct: 481 SGTNAQVTYSLLPPQDPHLPLASLVSINTDNGHLFALRSLDYEALQAFEFRVGASDRGSP 540
Query: 540 ALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQN 599
ALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQN
Sbjct: 541 ALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQN 600
Query: 600 AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH 659
AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAK RLVVLVKDNGEPP SATATLH
Sbjct: 601 AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPCSATATLH 660
Query: 660 VLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA 719
+LLVDGFSQPYLPLPEAAPAQ QADSLTVYLVVALASVSSLFLFSVLLFVAV LCRRSRA
Sbjct: 661 LLLVDGFSQPYLPLPEAAPAQGQADSLTVYLVVALASVSSLFLFSVLLFVAVLLCRRSRA 720
Query: 720 APVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQST 779
A VGRCSVPEGPFPGHLVDV GTG+LSQ+Y YEVC+ GGS +N+F+FLKP++PN S
Sbjct: 721 ASVGRCSVPEGPFPGHLVDVRGTGSLSQNYQYEVCLAGGSGTNEFQFLKPVLPNIQGHSF 780
Query: 780 GSEVEENPPFQNNLGF 795
G E+E+N F+N GF
Sbjct: 781 GPEMEQNSNFRNGFGF 796
>gi|14195616 protocadherin beta 9 precursor [Homo sapiens]
Length = 797
Score = 1137 bits (2940), Expect = 0.0
Identities = 578/795 (72%), Positives = 659/795 (82%)
Query: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
M+ G + RQVL F+ G+S AGS G + V EE + GSFV NLAK LGL EL+
Sbjct: 1 MKTRGFSFPRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELA 60
Query: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
+RG RVVS+DNK+ L LD++TG+LL E LDRE+LCG EPC+LYFQ+LM +P Q + E
Sbjct: 61 ARGTRVVSDDNKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAE 120
Query: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
L+VRDINDHSPVF KEM+L+I EN+ G F LE A+D D G N++++YTI+ NS FH+
Sbjct: 121 LRVRDINDHSPVFRHKEMVLKISENTAEGTAFRLERAQDPDEGHNSIQNYTISSNSFFHI 180
Query: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
KI + + YPELVLDKALD EE+ ELS LTALDGGSP RSGT+ +R+VV+D+NDN+P
Sbjct: 181 KISGSDEGMIYPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAP 240
Query: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
+F QA YE + ENS +GSL+V VSA D DSG N+E+SY+F ASEDI TF+IN SG+
Sbjct: 241 QFAQALYETQAPENSPVGSLIVKVSAGDADSGVNAEVSYSFFDASEDILTTFQINPFSGE 300
Query: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
I L LD+E + SY I IQA DGGGL + TV I+V+D NDN PE+ +SS+++ + EN+
Sbjct: 301 IFLRELLDYELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIISSLSNSVAENS 360
Query: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
P V+ VF+I+DRDSG+NGK +C + +++PF LK SV+N+Y L TE LDRES+AEYNIT
Sbjct: 361 PGIVLAVFKIKDRDSGENGKTICYVQDNLPFFLKPSVDNFYILMTEGALDRESKAEYNIT 420
Query: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
ITVTDLGTPRLKTEH+IT+ VSDVNDNAPAFTQTSY LFVRENNSPALHIGS+SATDRDS
Sbjct: 421 ITVTDLGTPRLKTEHSITLQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
GTNAQV YSLLP QDPHLPLASLVSINADNGHLFALRSLDYEALQ F FRVGA+D GSPA
Sbjct: 481 GTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFDFRVGASDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQAD LTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAA 720
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
VGRCSVPEGPFPGHLVDVSGTGTL QSY YEVC+TGGS + +FKFLKPI P+ P G
Sbjct: 721 SVGRCSVPEGPFPGHLVDVSGTGTLFQSYQYEVCLTGGSETGEFKFLKPITPHLPPHRGG 780
Query: 781 SEVEENPPFQNNLGF 795
E+EEN N+ GF
Sbjct: 781 KEIEENSTLPNSFGF 795
>gi|9256602 protocadherin beta 10 precursor [Homo sapiens]
Length = 800
Score = 1125 bits (2910), Expect = 0.0
Identities = 575/786 (73%), Positives = 652/786 (82%), Gaps = 2/786 (0%)
Query: 12 RQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
RQVL F+ G+S AGS G + V EE + GSFV NLAK LGL EL++RG RVVS+DN
Sbjct: 12 RQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELAARGTRVVSDDN 71
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
K+ L LD++TG+LL E LDRE+LCG EPC+LYFQ+LM +P Q + EL+VRDINDH+P
Sbjct: 72 KQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAELRVRDINDHAP 131
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
VF +KE +L+I EN+ G F LE A+D D G+N +++YTI+PNS FH+ I + Y
Sbjct: 132 VFQDKETVLKISENTAEGTAFRLERAQDPDGGLNGIQNYTISPNSFFHINISGGDEGMIY 191
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
PELVLDKALD EE+ ELS LTALDGGSP RSGT+ VR+VV+D+NDN+P+F QA YE +
Sbjct: 192 PELVLDKALDREEQGELSLTLTALDGGSPSRSGTSTVRIVVLDVNDNAPQFAQALYETQA 251
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
ENS +G L+V V A D+DSG N+E+SY+F ASE+IR TF+IN SG+I L LD+E
Sbjct: 252 PENSPIGFLIVKVWAEDVDSGVNAEVSYSFFDASENIRTTFQINPFSGEIFLRELLDYEL 311
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPETVVMVFRIR 371
+ SY I IQA DGGGL + V ++V+D NDN PE+ VSS ++ + EN+PET + VF+I
Sbjct: 312 VNSYKINIQAMDGGGLSARCRVLVEVLDTNDNPPELIVSSFSNSVAENSPETPLAVFKIN 371
Query: 372 DRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRL 431
DRDSG+NGKMVC I E++PF+LK SV N+Y L TE LDRE RAEYNITITVTDLGTPRL
Sbjct: 372 DRDSGENGKMVCYIQENLPFLLKPSVENFYILITEGALDREIRAEYNITITVTDLGTPRL 431
Query: 432 KTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLL 491
KTEHNITVLVSDVNDNAPAFTQTSY LFVRENNSPALHIGS+SATDRDSGTNAQV YSLL
Sbjct: 432 KTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 491
Query: 492 PSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLV 551
P QDPHLPLASLVSINADNGHLFALRSLDYEALQ F+FRVGATD GSPALS EALVRVLV
Sbjct: 492 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALVRVLV 551
Query: 552 LDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611
LDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 552 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611
Query: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671
PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH+LLVDGFSQPYL
Sbjct: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHLLLVDGFSQPYL 671
Query: 672 PLPEAAPAQAQ--ADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVPE 729
PLPEAAPAQAQ AD LTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAA VGRCSVPE
Sbjct: 672 PLPEAAPAQAQAEADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAASVGRCSVPE 731
Query: 730 GPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEENPPF 789
GPFPGHLVDV G TLSQSY YEVC+TGG +++FKFLKP+I + Q G + EEN F
Sbjct: 732 GPFPGHLVDVRGAETLSQSYQYEVCLTGGPGTSEFKFLKPVISDIQAQGPGRKGEENSTF 791
Query: 790 QNNLGF 795
+N+ GF
Sbjct: 792 RNSFGF 797
>gi|9256618 protocadherin beta 6 precursor [Homo sapiens]
Length = 794
Score = 1113 bits (2880), Expect = 0.0
Identities = 568/784 (72%), Positives = 647/784 (82%), Gaps = 1/784 (0%)
Query: 12 RQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
RQV F +L+ + GSE+ + V+EE +SG+FV NL K LGL V EL+SRGARVV N
Sbjct: 11 RQVAFFILLMLWGEVGSESIQYSVLEETESGTFVANLTKDLGLRVGELASRGARVVFKGN 70
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
++ LQ D T DLLL E LDREELCGS EPCVL FQVL++NP QF Q L+VRDINDH+P
Sbjct: 71 RQHLQFDPQTHDLLLNEKLDREELCGSTEPCVLPFQVLLENPLQFFQASLRVRDINDHAP 130
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
F +EMLL+I E + G +F L+ A DLD G N ++ YTI+ N HFHV R + RK+
Sbjct: 131 EFPAREMLLKISEITMPGKIFPLKMAHDLDTGSNGLQRYTISSNPHFHVLTRNRSEGRKF 190
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
PELVLDK LD EE+P+L L ALDGGSPPRSGT+ +++ V+DINDN PEF Q YE ++
Sbjct: 191 PELVLDKPLDREEQPQLRLTLIALDGGSPPRSGTSEIQIQVLDINDNVPEFAQELYEAQV 250
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
EN+ LGSLV+TVSA DLD+G+ ++SY +D+ + FEIN +G+I L LDFE
Sbjct: 251 PENNPLGSLVITVSARDLDAGSFGKVSYALFQV-DDVNQPFEINAITGEIRLRKALDFEE 309
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPETVVMVFRIR 371
I+SY + ++ATDGGGL GK ++ ++V+DVNDNAPE+T+S S IPEN PE V VF +
Sbjct: 310 IQSYDVDVEATDGGGLSGKCSLVVRVLDVNDNAPELTMSFFISLIPENLPEITVAVFSVS 369
Query: 372 DRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRL 431
D DSG N +++CSI ++PF+L+ SV N+YTL TE LDRESRAEYNITITVTDLGTPRL
Sbjct: 370 DADSGHNQQVICSIENNLPFLLRPSVENFYTLVTEGALDRESRAEYNITITVTDLGTPRL 429
Query: 432 KTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLL 491
KT+ +ITV VSDVNDN PAFTQTSY LFVRENNSPALHIGS+SATDRDSG NAQV YSLL
Sbjct: 430 KTQQSITVQVSDVNDNVPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGINAQVTYSLL 489
Query: 492 PSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLV 551
P QDPHLPL+SLVSINADNGHLFALRSLDYEALQ F+FRVGATD GSPALSSEALVR+LV
Sbjct: 490 PPQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATDRGSPALSSEALVRLLV 549
Query: 552 LDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611
LDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 550 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 609
Query: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671
GLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL
Sbjct: 610 LGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 669
Query: 672 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVPEGP 731
PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA VGR SVPEGP
Sbjct: 670 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRYSVPEGP 729
Query: 732 FPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEENPPFQN 791
FPGHLVDVSGTGTLSQSY Y+VC+TGGS +N+FKFLKPI+PNF PQ T E+EE P +N
Sbjct: 730 FPGHLVDVSGTGTLSQSYQYKVCLTGGSETNEFKFLKPIMPNFPPQGTEREMEETPTSRN 789
Query: 792 NLGF 795
+ F
Sbjct: 790 SFPF 793
>gi|14195607 protocadherin beta 1 precursor [Homo sapiens]
Length = 818
Score = 773 bits (1996), Expect = 0.0
Identities = 398/778 (51%), Positives = 546/778 (70%), Gaps = 5/778 (0%)
Query: 8 TLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVV 67
+LQ RQV + L +S + T + V EE++SGSFV N+AK LGLEV +L++RGAR+V
Sbjct: 8 SLQNRQVGSLLIFLCISVGDATTIRYSVAEEMESGSFVANVAKDLGLEVGKLAARGARLV 67
Query: 68 SNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDIN 127
S NK +L TGDL ++E LDRE LCG +PCVL+F+V++ P Q + E++V DIN
Sbjct: 68 SEGNKMHFRLHRKTGDLFVKEKLDRESLCGKADPCVLHFEVVLVEPLQSFRAEVRVFDIN 127
Query: 128 DHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPD 187
D++PVFL KE LL+IPE++P+G+ F L+SA+DLDVG+N +++YT++ N +FH+ R
Sbjct: 128 DNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANGYFHLHTRFCSH 187
Query: 188 NRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFY 247
KY ELVL+K LD EE+PE++ +TA+DGGSPP+SGTA + VVV+D+ND+ P+F + Y
Sbjct: 188 GPKYAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVY 247
Query: 248 EVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPL 307
++ ENS GSLV TV+A DLD GTN ++Y+ + E I KTF+I+ ++G++ L PL
Sbjct: 248 RAQVSENSPNGSLVATVTAVDLDEGTNKAITYSLAQNPEAILKTFQIDPQNGEVRLRGPL 307
Query: 308 DFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTP-ETVVM 366
DFEAIE+Y I IQATDGGGL S V ++V+DVNDN PE+ VSS++SP+PE++P +TVV
Sbjct: 308 DFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVMVSSVSSPLPEDSPPQTVVA 367
Query: 367 VFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDL 426
+F IRDRD GK+ C + ED+PFV+K + N Y+L T+R LDRE + YNITI D
Sbjct: 368 LFTIRDRDIRVGGKVTCFLREDLPFVIKPTFGNSYSLVTDRSLDREEVSGYNITIVAMDT 427
Query: 427 GTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQV 486
G P L E I VL+SDVNDN P F + SY L VRENNSPA+ IG + A D D G NAQ+
Sbjct: 428 GPPSLSAETMIEVLISDVNDNPPIFREDSYILTVRENNSPAVFIGKVHAEDLDLGENAQI 487
Query: 487 NYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEAL 546
YSLLP ++ L + + +SIN+ NG L+ALR++DYEA+Q FQF V ATD G +LSS+
Sbjct: 488 TYSLLPPKNGDLSVFAYISINSGNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSQVT 547
Query: 547 VRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQL 606
VRV+VLD NDN P +LYPLQNG+ PC +LVP +AE GYLVTKVVAVDGDSGQN+WLSY L
Sbjct: 548 VRVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQNSWLSYHL 607
Query: 607 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 666
LKAT+ GLF V NGE+ T R +SERD +L++LV+D+G+P S T +L++LLVDGF
Sbjct: 608 LKATDLGLFSVQRQNGEIHTLRQISERDPMMQKLIILVQDHGQPALSTTVSLNILLVDGF 667
Query: 667 SQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR---AAPVG 723
S+PYL + + + T YLV++L +S LFL SV++ + + ++ + +
Sbjct: 668 SEPYLQFQDPTKHSRKVNPSTKYLVISLVILSFLFLLSVIVIFIIHVYQKIKYREKFTIQ 727
Query: 724 RCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNF-LPQSTG 780
+ F +LV G G+LS+ YE+C G+ +++F+FLK +PNF P +TG
Sbjct: 728 EHFYDDCNFSNNLVQGQGNGSLSRPCPYEMCSATGTGNSEFRFLKRFMPNFPFPHATG 785
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 631 bits (1627), Expect = 0.0
Identities = 343/762 (45%), Positives = 477/762 (62%), Gaps = 4/762 (0%)
Query: 12 RQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
R +LL L + +AG+ ++ V EE GSFVGN+AK LGL+ EL+ G R+VS
Sbjct: 12 RLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGR 71
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
L+ +G L+ +DREELC + PC++ F +L+++ + +E+++ DIND++P
Sbjct: 72 MPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTP 131
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
F +E+ ++ E + G L +DLDVG+N+++SY ++ N HF + ++ D ++
Sbjct: 132 QFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQH 191
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
PE+VL LD EE ILTA DGG P RSGT + + VVD NDN P F QA Y + +
Sbjct: 192 PEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
EN LG+ ++ V+A D D G N E++Y+F + + + F ++ +G+I+ PLDFE
Sbjct: 252 PENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEE 311
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPEN-TPETVVMVFRI 370
+ YS+ +QA DG GL K V I+V+DVNDNAPE+T++S+T+ +PEN P T++ + +
Sbjct: 312 YKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISV 371
Query: 371 RDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPR 430
D+DSGDNG C IP ++PF L+ V+NYY L TER LDRE + YNITIT D GTP
Sbjct: 372 HDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPA 431
Query: 431 LKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSL 490
L TE +I++LV+D+NDN+P F Q SY+ ++ ENN I S+ A D DS NAQ+ YSL
Sbjct: 432 LSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSL 491
Query: 491 LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVL 550
+ PL++ +SIN+D G L+ALRS DYE + Q +V A D G P LSS + +
Sbjct: 492 IEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLF 551
Query: 551 VLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 609
+LD NDN+P +LYP L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLKA
Sbjct: 552 LLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611
Query: 610 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 669
+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D S
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDI 671
Query: 670 YLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVP 728
L P+ DS LT+YLVVA A+VS +FL V++ +A RL R ++ +
Sbjct: 672 LADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGG 731
Query: 729 EGPFPG-HLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKP 769
PG H V V G Q+Y +EV +T SR + F +P
Sbjct: 732 LASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 631 bits (1627), Expect = 0.0
Identities = 343/762 (45%), Positives = 477/762 (62%), Gaps = 4/762 (0%)
Query: 12 RQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
R +LL L + +AG+ ++ V EE GSFVGN+AK LGL+ EL+ G R+VS
Sbjct: 12 RLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGR 71
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
L+ +G L+ +DREELC + PC++ F +L+++ + +E+++ DIND++P
Sbjct: 72 MPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTP 131
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
F +E+ ++ E + G L +DLDVG+N+++SY ++ N HF + ++ D ++
Sbjct: 132 QFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQH 191
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
PE+VL LD EE ILTA DGG P RSGT + + VVD NDN P F QA Y + +
Sbjct: 192 PEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
EN LG+ ++ V+A D D G N E++Y+F + + + F ++ +G+I+ PLDFE
Sbjct: 252 PENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEE 311
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPEN-TPETVVMVFRI 370
+ YS+ +QA DG GL K V I+V+DVNDNAPE+T++S+T+ +PEN P T++ + +
Sbjct: 312 YKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISV 371
Query: 371 RDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPR 430
D+DSGDNG C IP ++PF L+ V+NYY L TER LDRE + YNITIT D GTP
Sbjct: 372 HDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPA 431
Query: 431 LKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSL 490
L TE +I++LV+D+NDN+P F Q SY+ ++ ENN I S+ A D DS NAQ+ YSL
Sbjct: 432 LSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSL 491
Query: 491 LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVL 550
+ PL++ +SIN+D G L+ALRS DYE + Q +V A D G P LSS + +
Sbjct: 492 IEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLF 551
Query: 551 VLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 609
+LD NDN+P +LYP L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLKA
Sbjct: 552 LLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611
Query: 610 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 669
+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D S
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDI 671
Query: 670 YLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVP 728
L P+ DS LT+YLVVA A+VS +FL V++ +A RL R ++ +
Sbjct: 672 LADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGG 731
Query: 729 EGPFPG-HLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKP 769
PG H V V G Q+Y +EV +T SR + F +P
Sbjct: 732 LASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
[Homo sapiens]
Length = 813
Score = 630 bits (1624), Expect = e-180
Identities = 351/779 (45%), Positives = 488/779 (62%), Gaps = 7/779 (0%)
Query: 13 QVLLFFVLLG-MSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
++LL F+LLG + + GS + + EEL GSFVGN+AK LGLE EL+ RG R+VS
Sbjct: 12 ELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGR 71
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
+ L+ +G L+ +DREELC + CV+ F +L++N + +E+++ DIND+ P
Sbjct: 72 TQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFP 131
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
F ++E+ +++ EN+ G +L A+D DVG+N+++SY ++ N HF + + D +KY
Sbjct: 132 RFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKY 191
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
PELVL++ LD E+ +LTALDGG P SGT +RV V+D NDN+P F + Y V +
Sbjct: 192 PELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSV 251
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
EN +G+ ++ ++A D D G N +L+Y+F + E I +TF+++ G+I+ LD+E
Sbjct: 252 PENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEE 311
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPEN-TPETVVMVFRI 370
Y + + A DGG L + V + V DVNDNAPE+ ++S+TS I E+ P TV+ +F +
Sbjct: 312 SRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSV 371
Query: 371 RDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPR 430
D DSG+NG++ CSIP ++PF L+ SV+NYY L T R LDRE ++YNIT+TV D GTP
Sbjct: 372 HDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPP 431
Query: 431 LKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSL 490
L TE +I + V+DVNDN P F Q SY+ V ENN + I S++A D DSG NA+V YSL
Sbjct: 432 LSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSL 491
Query: 491 LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVL 550
PL+S VSIN+D G L+ALRS DYE L+ Q V A+D G+P LSS + +
Sbjct: 492 AEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLF 551
Query: 551 VLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 609
VLD NDN+P +LYP L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLKA
Sbjct: 552 VLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKA 611
Query: 610 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 669
+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT T+ V + D
Sbjct: 612 SEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDI 671
Query: 670 YLPLPE-AAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAAPVGRCS 726
L P + LT+YLVVA+A+VS +FL V++ + +RL R +SR
Sbjct: 672 LADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSR 731
Query: 727 VPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEE 785
+ P H V V G Q+Y +EV +T SR + F +P + L E E
Sbjct: 732 LAGVP-ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEESCEKSE 789
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 630 bits (1624), Expect = e-180
Identities = 351/779 (45%), Positives = 488/779 (62%), Gaps = 7/779 (0%)
Query: 13 QVLLFFVLLG-MSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
++LL F+LLG + + GS + + EEL GSFVGN+AK LGLE EL+ RG R+VS
Sbjct: 12 ELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGR 71
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
+ L+ +G L+ +DREELC + CV+ F +L++N + +E+++ DIND+ P
Sbjct: 72 TQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFP 131
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
F ++E+ +++ EN+ G +L A+D DVG+N+++SY ++ N HF + + D +KY
Sbjct: 132 RFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKY 191
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
PELVL++ LD E+ +LTALDGG P SGT +RV V+D NDN+P F + Y V +
Sbjct: 192 PELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSV 251
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
EN +G+ ++ ++A D D G N +L+Y+F + E I +TF+++ G+I+ LD+E
Sbjct: 252 PENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEE 311
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPEN-TPETVVMVFRI 370
Y + + A DGG L + V + V DVNDNAPE+ ++S+TS I E+ P TV+ +F +
Sbjct: 312 SRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSV 371
Query: 371 RDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPR 430
D DSG+NG++ CSIP ++PF L+ SV+NYY L T R LDRE ++YNIT+TV D GTP
Sbjct: 372 HDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPP 431
Query: 431 LKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSL 490
L TE +I + V+DVNDN P F Q SY+ V ENN + I S++A D DSG NA+V YSL
Sbjct: 432 LSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSL 491
Query: 491 LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVL 550
PL+S VSIN+D G L+ALRS DYE L+ Q V A+D G+P LSS + +
Sbjct: 492 AEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLF 551
Query: 551 VLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 609
VLD NDN+P +LYP L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLKA
Sbjct: 552 VLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKA 611
Query: 610 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 669
+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT T+ V + D
Sbjct: 612 SEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDI 671
Query: 670 YLPLPE-AAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAAPVGRCS 726
L P + LT+YLVVA+A+VS +FL V++ + +RL R +SR
Sbjct: 672 LADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSR 731
Query: 727 VPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEE 785
+ P H V V G Q+Y +EV +T SR + F +P + L E E
Sbjct: 732 LAGVP-ASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEESCEKSE 789
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 627 bits (1617), Expect = e-179
Identities = 348/767 (45%), Positives = 485/767 (63%), Gaps = 13/767 (1%)
Query: 12 RQVLLFFVLLGMS-QAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSND 70
R L +LLG +A + + V EE GSFVG++AK LGLE EL+ RG R++S
Sbjct: 11 RGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRG 70
Query: 71 NKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHS 130
+ L+ +G L+ +DREE+C + C++ F +LM++ I++++ DIND+
Sbjct: 71 RTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNV 130
Query: 131 PVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRK 190
P FL +E+ ++I EN+ G F L A D DVG N+++SY ++PN HF + ++ D K
Sbjct: 131 PRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETK 190
Query: 191 YPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVK 250
YPELVL++ LD EE +LTA DGG PPRS TA ++V VVD+ND++P F Y+V
Sbjct: 191 YPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVT 250
Query: 251 ILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFE 310
+ EN +G+ ++TV A DLD G N E++Y+F + + K F +N +G+I+ LD+E
Sbjct: 251 VPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYE 310
Query: 311 AIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTP-ETVVMVFR 369
Y + +QA DG G K+ V I V+DVNDNAPE+T++S++S IPE+TP TV+ +F
Sbjct: 311 ETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFY 370
Query: 370 IRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTP 429
++DRDSG NG++ C+IPE++PF L+ S++NYY L T + LDRE+ + YNIT+ TD GTP
Sbjct: 371 LQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTP 430
Query: 430 RLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYS 489
L E +I + V+D NDN P F +SY++++ ENN I ++A D DS NAQ+ YS
Sbjct: 431 PLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYS 490
Query: 490 LLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRV 549
L P++S VSIN+D G L+AL+S DYE L+ Q RV A D G P LSS + +
Sbjct: 491 LAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSL 550
Query: 550 LVLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608
VLD NDN P +LYP L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY LLK
Sbjct: 551 FVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLK 610
Query: 609 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 668
A+EPGLF V + GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D +
Sbjct: 611 ASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPE 670
Query: 669 PYLPLPEAAPAQAQAD-SLTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AAPV 722
L P+ + LT+YLVVA+A+VS +FL VL+ +A+RL R +SR A+
Sbjct: 671 VLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEG 730
Query: 723 GRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKP 769
G +VP H V + G Q+Y +EV +T SR + F +P
Sbjct: 731 GLANVP----TSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
[Homo sapiens]
Length = 817
Score = 627 bits (1617), Expect = e-179
Identities = 348/767 (45%), Positives = 485/767 (63%), Gaps = 13/767 (1%)
Query: 12 RQVLLFFVLLGMS-QAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSND 70
R L +LLG +A + + V EE GSFVG++AK LGLE EL+ RG R++S
Sbjct: 11 RGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRG 70
Query: 71 NKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHS 130
+ L+ +G L+ +DREE+C + C++ F +LM++ I++++ DIND+
Sbjct: 71 RTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNV 130
Query: 131 PVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRK 190
P FL +E+ ++I EN+ G F L A D DVG N+++SY ++PN HF + ++ D K
Sbjct: 131 PRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETK 190
Query: 191 YPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVK 250
YPELVL++ LD EE +LTA DGG PPRS TA ++V VVD+ND++P F Y+V
Sbjct: 191 YPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVT 250
Query: 251 ILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFE 310
+ EN +G+ ++TV A DLD G N E++Y+F + + K F +N +G+I+ LD+E
Sbjct: 251 VPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYE 310
Query: 311 AIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTP-ETVVMVFR 369
Y + +QA DG G K+ V I V+DVNDNAPE+T++S++S IPE+TP TV+ +F
Sbjct: 311 ETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFY 370
Query: 370 IRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTP 429
++DRDSG NG++ C+IPE++PF L+ S++NYY L T + LDRE+ + YNIT+ TD GTP
Sbjct: 371 LQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTP 430
Query: 430 RLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYS 489
L E +I + V+D NDN P F +SY++++ ENN I ++A D DS NAQ+ YS
Sbjct: 431 PLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYS 490
Query: 490 LLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRV 549
L P++S VSIN+D G L+AL+S DYE L+ Q RV A D G P LSS + +
Sbjct: 491 LAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSL 550
Query: 550 LVLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608
VLD NDN P +LYP L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY LLK
Sbjct: 551 FVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLK 610
Query: 609 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 668
A+EPGLF V + GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D +
Sbjct: 611 ASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPE 670
Query: 669 PYLPLPEAAPAQAQAD-SLTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AAPV 722
L P+ + LT+YLVVA+A+VS +FL VL+ +A+RL R +SR A+
Sbjct: 671 VLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEG 730
Query: 723 GRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKP 769
G +VP H V + G Q+Y +EV +T SR + F +P
Sbjct: 731 GLANVP----TSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 621 bits (1601), Expect = e-178
Identities = 348/780 (44%), Positives = 487/780 (62%), Gaps = 14/780 (1%)
Query: 3 NGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSR 62
+G G ++ QVLL F+L A + + EEL S VGNLAK LGL V +L +R
Sbjct: 5 SGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPAR 64
Query: 63 GARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQ 122
RV + KE ++ +GDLL+ + +DRE++CG CVL F + +NP I +
Sbjct: 65 KLRVSAE--KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVI 122
Query: 123 VRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKI 182
V+DIND++P+F + ++ L+I E++ G F L+ A D DVG N+++ Y +N N +F +
Sbjct: 123 VQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAE 182
Query: 183 RVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEF 242
+ PD RKYPEL+L +LD EE +LTA+DGG PP+SGT +R+ V D NDN P F
Sbjct: 183 KQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVF 242
Query: 243 EQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDIT 302
Q Y V + E+ G V+ V+A D D G N+E++Y+F + E ++ F +N+K+G+IT
Sbjct: 243 SQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEIT 302
Query: 303 LTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPE 362
LDFE SY++ I+A D G L +++++++D ND APE+ V+S+++P+PE++P
Sbjct: 303 TKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPP 362
Query: 363 -TVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITI 421
TV+ + + RDRDSG+NG++ C + + F+LKSS NYY L T+ LDRE EYN+TI
Sbjct: 363 GTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTI 422
Query: 422 TVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSG 481
T TD G P L + +T+ +SDVNDNAP F QTSY + V ENN P I ISA+D D G
Sbjct: 423 TATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLG 482
Query: 482 TNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPAL 541
+ QV+YS++ S + S VS++A +G +FA R+ D+E L+ F+ + A D GSPAL
Sbjct: 483 PSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 542
Query: 542 SSEALVRVLVLDANDNSPFVLYPL--QNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQN 599
S+ +RVLV D NDN+P VLYP +GSA ++VP AAEPGYLVTKVVAVD DSG N
Sbjct: 543 SANVSLRVLVGDLNDNAPRVLYPALGPDGSA-LFDMVPRAAEPGYLVTKVVAVDADSGHN 601
Query: 600 AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH 659
AWLSY +L+A+EPGLF + GEVRTAR L +RDAA+ RL+V V+D G+PP SATATLH
Sbjct: 602 AWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLH 661
Query: 660 VLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA 719
++ D + L + L YLVVALA +S LF +V+L +++RL R S
Sbjct: 662 LIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRL-RLSSR 720
Query: 720 APVGRCSVP---EGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLP 776
+ C P P PG L + S GTL Y Y +CV S +F FL I P +P
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYS-EGTL--PYSYNLCVASQSAKTEFNFLN-ITPELVP 776
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 621 bits (1601), Expect = e-178
Identities = 348/780 (44%), Positives = 487/780 (62%), Gaps = 14/780 (1%)
Query: 3 NGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSR 62
+G G ++ QVLL F+L A + + EEL S VGNLAK LGL V +L +R
Sbjct: 5 SGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPAR 64
Query: 63 GARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQ 122
RV + KE ++ +GDLL+ + +DRE++CG CVL F + +NP I +
Sbjct: 65 KLRVSAE--KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVI 122
Query: 123 VRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKI 182
V+DIND++P+F + ++ L+I E++ G F L+ A D DVG N+++ Y +N N +F +
Sbjct: 123 VQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAE 182
Query: 183 RVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEF 242
+ PD RKYPEL+L +LD EE +LTA+DGG PP+SGT +R+ V D NDN P F
Sbjct: 183 KQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVF 242
Query: 243 EQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDIT 302
Q Y V + E+ G V+ V+A D D G N+E++Y+F + E ++ F +N+K+G+IT
Sbjct: 243 SQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEIT 302
Query: 303 LTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPE 362
LDFE SY++ I+A D G L +++++++D ND APE+ V+S+++P+PE++P
Sbjct: 303 TKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPP 362
Query: 363 -TVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITI 421
TV+ + + RDRDSG+NG++ C + + F+LKSS NYY L T+ LDRE EYN+TI
Sbjct: 363 GTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTI 422
Query: 422 TVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSG 481
T TD G P L + +T+ +SDVNDNAP F QTSY + V ENN P I ISA+D D G
Sbjct: 423 TATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLG 482
Query: 482 TNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPAL 541
+ QV+YS++ S + S VS++A +G +FA R+ D+E L+ F+ + A D GSPAL
Sbjct: 483 PSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 542
Query: 542 SSEALVRVLVLDANDNSPFVLYPL--QNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQN 599
S+ +RVLV D NDN+P VLYP +GSA ++VP AAEPGYLVTKVVAVD DSG N
Sbjct: 543 SANVSLRVLVGDLNDNAPRVLYPALGPDGSA-LFDMVPRAAEPGYLVTKVVAVDADSGHN 601
Query: 600 AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH 659
AWLSY +L+A+EPGLF + GEVRTAR L +RDAA+ RL+V V+D G+PP SATATLH
Sbjct: 602 AWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLH 661
Query: 660 VLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA 719
++ D + L + L YLVVALA +S LF +V+L +++RL R S
Sbjct: 662 LIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRL-RLSSR 720
Query: 720 APVGRCSVP---EGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLP 776
+ C P P PG L + S GTL Y Y +CV S +F FL I P +P
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYS-EGTL--PYSYNLCVASQSAKTEFNFLN-ITPELVP 776
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 620 bits (1600), Expect = e-177
Identities = 341/761 (44%), Positives = 474/761 (62%), Gaps = 6/761 (0%)
Query: 14 VLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDNKE 73
VLL F+L + +A + + V EE+ GSFVGN+AK LGLE L+ +G R+VS +
Sbjct: 14 VLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQ 73
Query: 74 CLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSPVF 133
L+ +G L+ +DREELC + PC+L F +L+++ +E+++ DIND++P F
Sbjct: 74 LFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRF 133
Query: 134 LEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKYPE 193
+E+ L+I E + G L++A D DVG NA++ Y +NPN HF + +R D KYPE
Sbjct: 134 GVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPE 193
Query: 194 LVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKILE 253
LVL+++LD EE +L A DGG P SGT+ + V V+D NDN+P F Q Y + I E
Sbjct: 194 LVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPE 253
Query: 254 NSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEAIE 313
N+++G+ ++TV+A D D G +++ Y + + + FE+ SG++T+ LD+E
Sbjct: 254 NTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDAT 313
Query: 314 SYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT-PETVVMVFRIRD 372
+ I I+A DG GL ++ V + V+DVNDNAPE ++S TS + E++ P T++ +F + D
Sbjct: 314 FHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHD 373
Query: 373 RDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRLK 432
RDSG N CS+PED+PF L+ SV+NYY L T R LDRE + YNIT+T D G P L
Sbjct: 374 RDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLS 433
Query: 433 TEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLLP 492
T+ +I + V+D+NDNAPAF++TSY+ ++ ENN + S++A D DS NA V YS
Sbjct: 434 TDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAE 493
Query: 493 SQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLVL 552
PL+S +SIN+D G L+ALRS DYE L+ Q V A D G+P LSS + + VL
Sbjct: 494 DTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVL 553
Query: 553 DANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611
D NDN+P +LYP + EL P +AEPGYLVTKVVAVD DSGQNAWLSY LLKA+E
Sbjct: 554 DQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASE 613
Query: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671
PGLF V H GEVRTAR L +RDA K LVV ++D+G+PP SAT TL V + D
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 672 PLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAAPVGRCSVP 728
L P+ DS LT+YLVVA+A+VS +FL V++ +A RL R +SR S+
Sbjct: 674 DLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSL- 732
Query: 729 EGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKP 769
G H V V G Q+Y +EV +T SR + F +P
Sbjct: 733 TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 620 bits (1600), Expect = e-177
Identities = 341/761 (44%), Positives = 474/761 (62%), Gaps = 6/761 (0%)
Query: 14 VLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDNKE 73
VLL F+L + +A + + V EE+ GSFVGN+AK LGLE L+ +G R+VS +
Sbjct: 14 VLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQ 73
Query: 74 CLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSPVF 133
L+ +G L+ +DREELC + PC+L F +L+++ +E+++ DIND++P F
Sbjct: 74 LFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRF 133
Query: 134 LEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKYPE 193
+E+ L+I E + G L++A D DVG NA++ Y +NPN HF + +R D KYPE
Sbjct: 134 GVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPE 193
Query: 194 LVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKILE 253
LVL+++LD EE +L A DGG P SGT+ + V V+D NDN+P F Q Y + I E
Sbjct: 194 LVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPE 253
Query: 254 NSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEAIE 313
N+++G+ ++TV+A D D G +++ Y + + + FE+ SG++T+ LD+E
Sbjct: 254 NTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDAT 313
Query: 314 SYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT-PETVVMVFRIRD 372
+ I I+A DG GL ++ V + V+DVNDNAPE ++S TS + E++ P T++ +F + D
Sbjct: 314 FHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHD 373
Query: 373 RDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRLK 432
RDSG N CS+PED+PF L+ SV+NYY L T R LDRE + YNIT+T D G P L
Sbjct: 374 RDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLS 433
Query: 433 TEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLLP 492
T+ +I + V+D+NDNAPAF++TSY+ ++ ENN + S++A D DS NA V YS
Sbjct: 434 TDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAE 493
Query: 493 SQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLVL 552
PL+S +SIN+D G L+ALRS DYE L+ Q V A D G+P LSS + + VL
Sbjct: 494 DTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVL 553
Query: 553 DANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611
D NDN+P +LYP + EL P +AEPGYLVTKVVAVD DSGQNAWLSY LLKA+E
Sbjct: 554 DQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASE 613
Query: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671
PGLF V H GEVRTAR L +RDA K LVV ++D+G+PP SAT TL V + D
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 672 PLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAAPVGRCSVP 728
L P+ DS LT+YLVVA+A+VS +FL V++ +A RL R +SR S+
Sbjct: 674 DLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSL- 732
Query: 729 EGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKP 769
G H V V G Q+Y +EV +T SR + F +P
Sbjct: 733 TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 618 bits (1594), Expect = e-177
Identities = 341/778 (43%), Positives = 480/778 (61%), Gaps = 5/778 (0%)
Query: 13 QVLLFFVLLG-MSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
++L +LLG + + +E + V EE + GS VGN+AK LGL EL+ RG R+VS
Sbjct: 12 RLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGR 71
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
+ L+ +G L+ +DREELC + CV ++L+++ + L++E+++ D+ND+ P
Sbjct: 72 TQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPP 131
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
F ++ +++ EN GA F L A D DVG+N+++ Y +N N +F + ++ D KY
Sbjct: 132 SFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKY 191
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
PELVL++ALD EE +LTA DGG P RSGTA + +++VD NDN+P F Q Y V +
Sbjct: 192 PELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSV 251
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
EN +G+ ++TV A D D G N +++Y+F + I + F++N SGDIT+ LD+E
Sbjct: 252 RENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYED 311
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPE-NTPETVVMVFRI 370
Y I ++A DG GL +S V + V+D NDNAPE+TV+S+TS + E ++P TV+ +F +
Sbjct: 312 SGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNV 371
Query: 371 RDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPR 430
D DSG NG + CSIP+++PF L+ + NYY L T R LDRE +EYNIT+T TD GTP
Sbjct: 372 HDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPP 431
Query: 431 LKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSL 490
L TE +I++ V D+NDN P F SY+ ++ ENN I S++A D DSG NA++ YSL
Sbjct: 432 LSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSL 491
Query: 491 LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVL 550
PL+S VSIN++ G L+AL S DYE + Q + A+D G P LSS + +
Sbjct: 492 AEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLF 551
Query: 551 VLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 609
VLD NDN P +LYP + EL P +A+ GYLVTKVVAVD DSGQNAWLSY LLK+
Sbjct: 552 VLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKS 611
Query: 610 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 669
+EPGLF V H GEVRTAR L +RDA K RLVV+V+D+G+PP SAT TL V + D
Sbjct: 612 SEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDV 671
Query: 670 YLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPV-GRCSV 727
L P+ DS LT+YLVVA+A+VS +FL V + +A++L R ++ + S
Sbjct: 672 LADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSR 731
Query: 728 PEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEE 785
G H V V G Q+Y +EV +T SR + F +P + L E E
Sbjct: 732 LAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSE 789
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 618 bits (1594), Expect = e-177
Identities = 341/778 (43%), Positives = 480/778 (61%), Gaps = 5/778 (0%)
Query: 13 QVLLFFVLLG-MSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71
++L +LLG + + +E + V EE + GS VGN+AK LGL EL+ RG R+VS
Sbjct: 12 RLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGR 71
Query: 72 KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131
+ L+ +G L+ +DREELC + CV ++L+++ + L++E+++ D+ND+ P
Sbjct: 72 TQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPP 131
Query: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191
F ++ +++ EN GA F L A D DVG+N+++ Y +N N +F + ++ D KY
Sbjct: 132 SFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKY 191
Query: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251
PELVL++ALD EE +LTA DGG P RSGTA + +++VD NDN+P F Q Y V +
Sbjct: 192 PELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSV 251
Query: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311
EN +G+ ++TV A D D G N +++Y+F + I + F++N SGDIT+ LD+E
Sbjct: 252 RENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYED 311
Query: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPE-NTPETVVMVFRI 370
Y I ++A DG GL +S V + V+D NDNAPE+TV+S+TS + E ++P TV+ +F +
Sbjct: 312 SGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNV 371
Query: 371 RDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPR 430
D DSG NG + CSIP+++PF L+ + NYY L T R LDRE +EYNIT+T TD GTP
Sbjct: 372 HDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPP 431
Query: 431 LKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSL 490
L TE +I++ V D+NDN P F SY+ ++ ENN I S++A D DSG NA++ YSL
Sbjct: 432 LSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSL 491
Query: 491 LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVL 550
PL+S VSIN++ G L+AL S DYE + Q + A+D G P LSS + +
Sbjct: 492 AEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLF 551
Query: 551 VLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 609
VLD NDN P +LYP + EL P +A+ GYLVTKVVAVD DSGQNAWLSY LLK+
Sbjct: 552 VLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKS 611
Query: 610 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 669
+EPGLF V H GEVRTAR L +RDA K RLVV+V+D+G+PP SAT TL V + D
Sbjct: 612 SEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDV 671
Query: 670 YLPLPEAAPAQAQADS-LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPV-GRCSV 727
L P+ DS LT+YLVVA+A+VS +FL V + +A++L R ++ + S
Sbjct: 672 LADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSR 731
Query: 728 PEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEE 785
G H V V G Q+Y +EV +T SR + F +P + L E E
Sbjct: 732 LAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSE 789
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 617 bits (1592), Expect = e-176
Identities = 350/785 (44%), Positives = 482/785 (61%), Gaps = 12/785 (1%)
Query: 9 LQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVS 68
L+ R VLL +L + +A + + V EE + G VGN++K L LE EL+ R R+VS
Sbjct: 9 LRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVS 68
Query: 69 NDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDIND 128
+ L+ +G L+ +DREELC + C++ F+VL+++ + IE++V DIND
Sbjct: 69 RGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDIND 128
Query: 129 HSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDN 188
+P F + + ++I E + GA + L A D DVG+N+++SY ++PN HF + ++ +
Sbjct: 129 SAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNG 188
Query: 189 RKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 248
PELVL++ALD EE +LTA DGG P RS T + V V+D NDN+P F Q Y
Sbjct: 189 AINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYR 248
Query: 249 VKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLD 308
VK+LEN G+ ++T +A DLD G N +++Y F +E F++N+ +G+I+ LD
Sbjct: 249 VKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLD 308
Query: 309 FEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPE-TVVMV 367
+E Y + IQA DGGGL G + V I V DVNDN PE+T++S+ SP+ E+ P+ TV+++
Sbjct: 309 YEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILL 368
Query: 368 FRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLG 427
F DRDSG NG++VCSI E++ F L++S +YY L T + LDRE +EYNIT+T TD G
Sbjct: 369 FNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRG 428
Query: 428 TPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVN 487
TP L TE +IT+ V+D+NDN PAF+Q SY++++ ENN+ I S+ A D DS N++V
Sbjct: 429 TPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVI 488
Query: 488 YSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALV 547
YSL PL++ VSIN+D G L+AL S DYE + Q +V A+D GSP LSS +
Sbjct: 489 YSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSL 548
Query: 548 RVLVLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQL 606
R+ VLD NDN+P +LYP L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY+L
Sbjct: 549 RLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 608
Query: 607 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 666
KA+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D
Sbjct: 609 FKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSI 668
Query: 667 SQPYLPLPE-AAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRL-----CRRSRAA 720
L PA +A LT+YLVVA+A VS +FL V+ +A+RL RA
Sbjct: 669 PDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRAT 728
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
G VP H V V G Q+Y E +T SR + F +P + L
Sbjct: 729 SDGLAGVP----TSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLISQQS 784
Query: 781 SEVEE 785
E E
Sbjct: 785 CEKNE 789
>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
[Homo sapiens]
Length = 828
Score = 617 bits (1592), Expect = e-176
Identities = 350/785 (44%), Positives = 482/785 (61%), Gaps = 12/785 (1%)
Query: 9 LQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVS 68
L+ R VLL +L + +A + + V EE + G VGN++K L LE EL+ R R+VS
Sbjct: 9 LRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVS 68
Query: 69 NDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDIND 128
+ L+ +G L+ +DREELC + C++ F+VL+++ + IE++V DIND
Sbjct: 69 RGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDIND 128
Query: 129 HSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDN 188
+P F + + ++I E + GA + L A D DVG+N+++SY ++PN HF + ++ +
Sbjct: 129 SAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNG 188
Query: 189 RKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 248
PELVL++ALD EE +LTA DGG P RS T + V V+D NDN+P F Q Y
Sbjct: 189 AINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYR 248
Query: 249 VKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLD 308
VK+LEN G+ ++T +A DLD G N +++Y F +E F++N+ +G+I+ LD
Sbjct: 249 VKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLD 308
Query: 309 FEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPE-TVVMV 367
+E Y + IQA DGGGL G + V I V DVNDN PE+T++S+ SP+ E+ P+ TV+++
Sbjct: 309 YEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILL 368
Query: 368 FRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLG 427
F DRDSG NG++VCSI E++ F L++S +YY L T + LDRE +EYNIT+T TD G
Sbjct: 369 FNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRG 428
Query: 428 TPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVN 487
TP L TE +IT+ V+D+NDN PAF+Q SY++++ ENN+ I S+ A D DS N++V
Sbjct: 429 TPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVI 488
Query: 488 YSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALV 547
YSL PL++ VSIN+D G L+AL S DYE + Q +V A+D GSP LSS +
Sbjct: 489 YSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSL 548
Query: 548 RVLVLDANDNSPFVLYP-LQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQL 606
R+ VLD NDN+P +LYP L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY+L
Sbjct: 549 RLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 608
Query: 607 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 666
KA+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D
Sbjct: 609 FKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSI 668
Query: 667 SQPYLPLPE-AAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRL-----CRRSRAA 720
L PA +A LT+YLVVA+A VS +FL V+ +A+RL RA
Sbjct: 669 PDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRAT 728
Query: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
G VP H V V G Q+Y E +T SR + F +P + L
Sbjct: 729 SDGLAGVP----TSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLISQQS 784
Query: 781 SEVEE 785
E E
Sbjct: 785 CEKNE 789
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,246,761
Number of Sequences: 37866
Number of extensions: 1382848
Number of successful extensions: 10462
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3002
Number of HSP's gapped (non-prelim): 687
length of query: 795
length of database: 18,247,518
effective HSP length: 110
effective length of query: 685
effective length of database: 14,082,258
effective search space: 9646346730
effective search space used: 9646346730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.