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Search of human proteins with 89030854
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89030854 PREDICTED: hypothetical protein LOC340900 [Homo
sapiens]
(366 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89030854 PREDICTED: hypothetical protein LOC340900 [Homo sapi... 734 0.0
gi|89031814 PREDICTED: hypothetical protein LOC340900 [Homo sapi... 729 0.0
gi|169194605 PREDICTED: hypothetical protein LOC340900 [Homo sap... 722 0.0
gi|40538806 hypothetical protein LOC55096 [Homo sapiens] 311 5e-85
gi|11863154 archain isoform 1 [Homo sapiens] 30 4.5
gi|110224456 solute carrier family 12, member 6 isoform d [Homo ... 28 9.9
gi|110224454 solute carrier family 12, member 6 isoform c [Homo ... 28 9.9
gi|110224452 solute carrier family 12, member 6 isoform c [Homo ... 28 9.9
gi|4826780 solute carrier family 12, member 6 isoform b [Homo sa... 28 9.9
gi|110224449 solute carrier family 12, member 6 isoform a [Homo ... 28 9.9
>gi|89030854 PREDICTED: hypothetical protein LOC340900 [Homo
sapiens]
Length = 366
Score = 734 bits (1896), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60
MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT
Sbjct: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60
Query: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK
Sbjct: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
Query: 121 FEDVLPTFTALEMSSILRHCCDLIGIAAGSSDPICTNSLQVQRQFKAMMISIGRPLHSES 180
FEDVLPTFTALEMSSILRHCCDLIGIAAGSSDPICTNSLQVQRQFKAMMISIGRPLHSES
Sbjct: 121 FEDVLPTFTALEMSSILRHCCDLIGIAAGSSDPICTNSLQVQRQFKAMMISIGRPLHSES 180
Query: 181 ADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMMTYYTV 240
ADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMMTYYTV
Sbjct: 181 ADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMMTYYTV 240
Query: 241 RMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFPN 300
RMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFPN
Sbjct: 241 RMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFPN 300
Query: 301 LATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRGY 360
LATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRGY
Sbjct: 301 LATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRGY 360
Query: 361 GISGFE 366
GISGFE
Sbjct: 361 GISGFE 366
>gi|89031814 PREDICTED: hypothetical protein LOC340900 [Homo
sapiens]
Length = 366
Score = 729 bits (1882), Expect = 0.0
Identities = 364/366 (99%), Positives = 364/366 (99%)
Query: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60
MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT
Sbjct: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60
Query: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK
Sbjct: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
Query: 121 FEDVLPTFTALEMSSILRHCCDLIGIAAGSSDPICTNSLQVQRQFKAMMISIGRPLHSES 180
FEDVLPTFTALEMSSILRHCCDLIGIAA SSDPICTNSLQVQRQFKAMMISIGRPLHSES
Sbjct: 121 FEDVLPTFTALEMSSILRHCCDLIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSES 180
Query: 181 ADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMMTYYTV 240
ADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQM TYYTV
Sbjct: 181 ADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMTTYYTV 240
Query: 241 RMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFPN 300
RMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFPN
Sbjct: 241 RMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFPN 300
Query: 301 LATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRGY 360
LATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRGY
Sbjct: 301 LATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRGY 360
Query: 361 GISGFE 366
GISGFE
Sbjct: 361 GISGFE 366
>gi|169194605 PREDICTED: hypothetical protein LOC340900 [Homo
sapiens]
Length = 367
Score = 722 bits (1863), Expect = 0.0
Identities = 363/367 (98%), Positives = 363/367 (98%), Gaps = 1/367 (0%)
Query: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60
MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVK IEKAT
Sbjct: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKDIEKAT 60
Query: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK
Sbjct: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
Query: 121 FEDVLPTFTALEMSSILRHCCDL-IGIAAGSSDPICTNSLQVQRQFKAMMISIGRPLHSE 179
FEDVLPTFTALEMSSILRHCCDL IGIAA SSDPICTNSLQVQRQFKAMMISIGRPLHSE
Sbjct: 121 FEDVLPTFTALEMSSILRHCCDLLIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE 180
Query: 180 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMMTYYT 239
SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQM TYYT
Sbjct: 181 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACELLDQVKVVASKAQMTTYYT 240
Query: 240 VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP 299
VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP
Sbjct: 241 VRMFLDQCVDGSTALPAVVLEIPVFEQKKPLAKKVLGDFFEFGGVLRHPVIGVLSPQMFP 300
Query: 300 NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG 359
NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG
Sbjct: 301 NLATAANYWAKRRNSTFSGFEALDIIPGSTITFPVLQMASAQKISRGSDMDPYTLNILRG 360
Query: 360 YGISGFE 366
YGISGFE
Sbjct: 361 YGISGFE 367
>gi|40538806 hypothetical protein LOC55096 [Homo sapiens]
Length = 272
Score = 311 bits (798), Expect = 5e-85
Identities = 162/222 (72%), Positives = 180/222 (81%), Gaps = 2/222 (0%)
Query: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60
MS R + Q SSP D D S QGRFELSGK+RQYP DALEPQP IGD+K I+KA
Sbjct: 48 MSHLRKDSQPSSPGDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSIGDIKDIKKAA 107
Query: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
KSMLDPA +SHF+ VTPSLVFLCFIFDGLH+ALLSVGVSKRSN V+GNEN+E GT YAS+
Sbjct: 108 KSMLDPAHKSHFHPVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGTPYASR 167
Query: 121 FEDVLPTFTALEMSSILRHCCD-LIGIAAGSSDPICTNSLQVQRQFKAMMISIGRPLHSE 179
F+D +P F ALE SS+LRHCCD LIGIAAGSSD ICT+SLQVQR+FKAMM SIGR H E
Sbjct: 168 FKD-MPNFIALEKSSVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGE 226
Query: 180 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACEL 221
SADLLIS NA AI WI+SRPWVG LMFT LFG+FESP +L
Sbjct: 227 SADLLISCNAESAIGWISSRPWVGELMFTLLFGDFESPLHKL 268
>gi|11863154 archain isoform 1 [Homo sapiens]
Length = 511
Score = 29.6 bits (65), Expect = 4.5
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 69 RSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASKFEDVLPTF 128
+ H ++ T S+ + ++ + K + + +K SNI+ E+ ET L F V+P +
Sbjct: 44 KQHTFVETESVRY---VYQPMEKLYMVLITTKNSNIL---EDLETLRL----FSRVIPEY 93
Query: 129 T-ALEMSSILRHCCDLI 144
ALE + I HC DLI
Sbjct: 94 CRALEENEISEHCFDLI 110
>gi|110224456 solute carrier family 12, member 6 isoform d [Homo
sapiens]
Length = 1141
Score = 28.5 bits (62), Expect = 9.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 88 GLHKALLSVGVSKRSNIVIGNENKETGTLYASK----FEDVLPTFTALEMSSILRHCCDL 143
G H LL G K N + N N E G Y K FE+ + T ++SS+L +
Sbjct: 90 GEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMD--TRPKVSSLLNRMANY 147
Query: 144 IGIAAGSSD 152
+ G+ +
Sbjct: 148 TNLTQGAKE 156
>gi|110224454 solute carrier family 12, member 6 isoform c [Homo
sapiens]
Length = 1091
Score = 28.5 bits (62), Expect = 9.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 88 GLHKALLSVGVSKRSNIVIGNENKETGTLYASK----FEDVLPTFTALEMSSILRHCCDL 143
G H LL G K N + N N E G Y K FE+ + T ++SS+L +
Sbjct: 40 GEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMD--TRPKVSSLLNRMANY 97
Query: 144 IGIAAGSSD 152
+ G+ +
Sbjct: 98 TNLTQGAKE 106
>gi|110224452 solute carrier family 12, member 6 isoform c [Homo
sapiens]
Length = 1091
Score = 28.5 bits (62), Expect = 9.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 88 GLHKALLSVGVSKRSNIVIGNENKETGTLYASK----FEDVLPTFTALEMSSILRHCCDL 143
G H LL G K N + N N E G Y K FE+ + T ++SS+L +
Sbjct: 40 GEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMD--TRPKVSSLLNRMANY 97
Query: 144 IGIAAGSSD 152
+ G+ +
Sbjct: 98 TNLTQGAKE 106
>gi|4826780 solute carrier family 12, member 6 isoform b [Homo
sapiens]
Length = 1099
Score = 28.5 bits (62), Expect = 9.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 88 GLHKALLSVGVSKRSNIVIGNENKETGTLYASK----FEDVLPTFTALEMSSILRHCCDL 143
G H LL G K N + N N E G Y K FE+ + T ++SS+L +
Sbjct: 48 GEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMD--TRPKVSSLLNRMANY 105
Query: 144 IGIAAGSSD 152
+ G+ +
Sbjct: 106 TNLTQGAKE 114
>gi|110224449 solute carrier family 12, member 6 isoform a [Homo
sapiens]
Length = 1150
Score = 28.5 bits (62), Expect = 9.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 88 GLHKALLSVGVSKRSNIVIGNENKETGTLYASK----FEDVLPTFTALEMSSILRHCCDL 143
G H LL G K N + N N E G Y K FE+ + T ++SS+L +
Sbjct: 99 GEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMD--TRPKVSSLLNRMANY 156
Query: 144 IGIAAGSSD 152
+ G+ +
Sbjct: 157 TNLTQGAKE 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,271,091
Number of Sequences: 37866
Number of extensions: 562032
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1050
Number of HSP's gapped (non-prelim): 10
length of query: 366
length of database: 18,247,518
effective HSP length: 104
effective length of query: 262
effective length of database: 14,309,454
effective search space: 3749076948
effective search space used: 3749076948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.