Search of human proteins with 85794908

Search of human proteins with 85794908

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|85794908 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F2 isoform 2d [Homo sapiens]
         (49 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|85794908 ATP synthase, H+ transporting, mitochondrial F0 comp...   102   5e-23
gi|51479132 ATP synthase, H+ transporting, mitochondrial F0 comp...    96   5e-21
gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting...    96   8e-21
gi|51479129 ATP synthase, H+ transporting, mitochondrial F0 comp...    84   2e-17
gi|4757812 ATP synthase, H+ transporting, mitochondrial F0 compl...    77   2e-15
gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting...    52   8e-08
gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,...    52   8e-08
gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,...    52   8e-08

>gi|85794908 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2d [Homo sapiens]
          Length = 49

 Score =  102 bits (255), Expect = 5e-23
 Identities = 49/49 (100%), Positives = 49/49 (100%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 49
          MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH
Sbjct: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 49


>gi|51479132 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2c [Homo sapiens]
          Length = 55

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 5  VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 49
          VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH
Sbjct: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 55


>gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 79

 Score = 95.5 bits (236), Expect = 8e-21
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 49
          +ASVVPVKDKKLLEVKLGELPSWILM DFSPSGIFGAFQREHE LRKYH
Sbjct: 31 IASVVPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQREHEWLRKYH 79


>gi|51479129 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2b [Homo sapiens]
          Length = 88

 Score = 84.0 bits (206), Expect = 2e-17
 Identities = 41/44 (93%), Positives = 42/44 (95%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHER 44
          MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQR + R
Sbjct: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYR 44


>gi|4757812 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2a [Homo sapiens]
          Length = 94

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 37/40 (92%), Positives = 38/40 (95%)

Query: 5  VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHER 44
          VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQR + R
Sbjct: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYR 50


>gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 24/28 (85%), Positives = 26/28 (92%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRD 28
          M SV+PVKDKK LEVKLGELPSWILM+D
Sbjct: 1  MTSVIPVKDKKHLEVKLGELPSWILMQD 28


>gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 24/28 (85%), Positives = 26/28 (92%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRD 28
          M SV+PVKDKK LEVKLGELPSWILM+D
Sbjct: 1  MTSVIPVKDKKHLEVKLGELPSWILMQD 28


>gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 24/28 (85%), Positives = 26/28 (92%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRD 28
          M SV+PVKDKK LEVKLGELPSWILM+D
Sbjct: 1  MTSVIPVKDKKHLEVKLGELPSWILMQD 28


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,857,381
Number of Sequences: 37866
Number of extensions: 51298
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 10
length of query: 49
length of database: 18,247,518
effective HSP length: 23
effective length of query: 26
effective length of database: 17,376,600
effective search space: 451791600
effective search space used: 451791600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.