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Search of human proteins with 81158222
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|81158222 neuronal cell adhesion molecule isoform C [Homo
sapiens]
(87 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|81158222 neuronal cell adhesion molecule isoform C [Homo sapi... 180 2e-46
gi|81158226 neuronal cell adhesion molecule isoform A precursor ... 163 2e-41
gi|81158224 neuronal cell adhesion molecule isoform B precursor ... 163 2e-41
gi|237858679 neurofascin isoform 3 precursor [Homo sapiens] 107 3e-24
gi|237858677 neurofascin isoform 2 precursor [Homo sapiens] 107 3e-24
gi|89903008 neurofascin isoform 4 precursor [Homo sapiens] 107 3e-24
gi|237858675 neurofascin isoform 1 precursor [Homo sapiens] 107 3e-24
gi|4557707 L1 cell adhesion molecule isoform 1 precursor [Homo s... 86 8e-18
gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo... 80 3e-16
gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo ... 80 3e-16
gi|27894376 cell adhesion molecule with homology to L1CAM precur... 71 2e-13
gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens] 30 0.31
gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo sa... 30 0.41
gi|239582765 ral guanine nucleotide dissociation stimulator-like... 29 0.70
gi|239582763 ral guanine nucleotide dissociation stimulator-like... 29 0.70
gi|19923191 minichromosome maintenance complex component 3 assoc... 29 0.70
gi|209862861 hypothetical protein LOC9840 [Homo sapiens] 28 1.2
gi|149363704 hypothetical protein LOC9840 [Homo sapiens] 28 1.2
gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)... 28 2.0
gi|154090959 hypothetical protein LOC55747 [Homo sapiens] 28 2.0
gi|5031977 nicotinamide phosphoribosyltransferase precursor [Hom... 27 2.6
gi|115529449 upstream binding transcription factor, RNA polymera... 27 2.6
gi|115529451 upstream binding transcription factor, RNA polymera... 27 2.6
gi|7657671 upstream binding transcription factor, RNA polymerase... 27 2.6
gi|7662270 synaptic vesicle protein 2B homolog [Homo sapiens] 27 2.6
gi|73695465 synaptic vesicle glycoprotein 2C [Homo sapiens] 27 2.6
gi|54124343 hypothetical protein LOC387680 [Homo sapiens] 27 2.6
gi|6912398 general transcription factor IIIC, polypeptide 3, 102... 27 2.6
gi|5729790 CCCTC-binding factor [Homo sapiens] 27 3.5
gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens] 27 3.5
>gi|81158222 neuronal cell adhesion molecule isoform C [Homo
sapiens]
Length = 87
Score = 180 bits (456), Expect = 2e-46
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MEFCRSLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYS 60
MEFCRSLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYS
Sbjct: 1 MEFCRSLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYS 60
Query: 61 GKKEKEPAEGNESSEAPSPVNAMNSFV 87
GKKEKEPAEGNESSEAPSPVNAMNSFV
Sbjct: 61 GKKEKEPAEGNESSEAPSPVNAMNSFV 87
>gi|81158226 neuronal cell adhesion molecule isoform A precursor [Homo
sapiens]
Length = 1304
Score = 163 bits (413), Expect = 2e-41
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 9 SDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPA 68
SDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPA
Sbjct: 1226 SDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPA 1285
Query: 69 EGNESSEAPSPVNAMNSFV 87
EGNESSEAPSPVNAMNSFV
Sbjct: 1286 EGNESSEAPSPVNAMNSFV 1304
>gi|81158224 neuronal cell adhesion molecule isoform B precursor [Homo
sapiens]
Length = 1183
Score = 163 bits (413), Expect = 2e-41
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 9 SDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPA 68
SDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPA
Sbjct: 1105 SDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPA 1164
Query: 69 EGNESSEAPSPVNAMNSFV 87
EGNESSEAPSPVNAMNSFV
Sbjct: 1165 EGNESSEAPSPVNAMNSFV 1183
>gi|237858679 neurofascin isoform 3 precursor [Homo sapiens]
Length = 1174
Score = 107 bits (266), Expect = 3e-24
Identities = 54/80 (67%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query: 6 SLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEK 65
S + ED+KPL+ GS+T D T+K+++SDDSLVDYGEG GQFNEDGSFIGQY+ KK+K
Sbjct: 1094 SFDYSDEDNKPLQ-GSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDK 1152
Query: 66 EPAEGNESSEAPSPVNAMNS 85
E EGNESSEA SPVNA+ S
Sbjct: 1153 EETEGNESSEATSPVNAIYS 1172
>gi|237858677 neurofascin isoform 2 precursor [Homo sapiens]
Length = 1189
Score = 107 bits (266), Expect = 3e-24
Identities = 54/80 (67%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query: 6 SLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEK 65
S + ED+KPL+ GS+T D T+K+++SDDSLVDYGEG GQFNEDGSFIGQY+ KK+K
Sbjct: 1109 SFDYSDEDNKPLQ-GSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDK 1167
Query: 66 EPAEGNESSEAPSPVNAMNS 85
E EGNESSEA SPVNA+ S
Sbjct: 1168 EETEGNESSEATSPVNAIYS 1187
>gi|89903008 neurofascin isoform 4 precursor [Homo sapiens]
Length = 1169
Score = 107 bits (266), Expect = 3e-24
Identities = 54/80 (67%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query: 6 SLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEK 65
S + ED+KPL+ GS+T D T+K+++SDDSLVDYGEG GQFNEDGSFIGQY+ KK+K
Sbjct: 1089 SFDYSDEDNKPLQ-GSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDK 1147
Query: 66 EPAEGNESSEAPSPVNAMNS 85
E EGNESSEA SPVNA+ S
Sbjct: 1148 EETEGNESSEATSPVNAIYS 1167
>gi|237858675 neurofascin isoform 1 precursor [Homo sapiens]
Length = 1240
Score = 107 bits (266), Expect = 3e-24
Identities = 54/80 (67%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query: 6 SLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEK 65
S + ED+KPL+ GS+T D T+K+++SDDSLVDYGEG GQFNEDGSFIGQY+ KK+K
Sbjct: 1160 SFDYSDEDNKPLQ-GSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDK 1218
Query: 66 EPAEGNESSEAPSPVNAMNS 85
E EGNESSEA SPVNA+ S
Sbjct: 1219 EETEGNESSEATSPVNAIYS 1238
>gi|4557707 L1 cell adhesion molecule isoform 1 precursor [Homo
sapiens]
Length = 1257
Score = 85.5 bits (210), Expect = 8e-18
Identities = 49/78 (62%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 5 RSLESDAEDHKPLKKGSRTPS-DRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKK 63
RSLESD E+ GS PS + +K SDDSL DYG V+ QFNEDGSFIGQYSGKK
Sbjct: 1177 RSLESDNEEKA---FGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGSFIGQYSGKK 1233
Query: 64 EKEPAEGNESSEAPSPVN 81
EKE A GN+SS A SP+N
Sbjct: 1234 EKEAAGGNDSSGATSPIN 1251
>gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo
sapiens]
Length = 1248
Score = 80.5 bits (197), Expect = 3e-16
Identities = 43/70 (61%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 13 DHKPLKKGSRTPS-DRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGN 71
D++ GS PS + +K SDDSL DYG V+ QFNEDGSFIGQYSGKKEKE A GN
Sbjct: 1173 DNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAAGGN 1232
Query: 72 ESSEAPSPVN 81
+SS A SP+N
Sbjct: 1233 DSSGATSPIN 1242
>gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo
sapiens]
Length = 1253
Score = 80.5 bits (197), Expect = 3e-16
Identities = 43/70 (61%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 13 DHKPLKKGSRTPS-DRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGN 71
D++ GS PS + +K SDDSL DYG V+ QFNEDGSFIGQYSGKKEKE A GN
Sbjct: 1178 DNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAAGGN 1237
Query: 72 ESSEAPSPVN 81
+SS A SP+N
Sbjct: 1238 DSSGATSPIN 1247
>gi|27894376 cell adhesion molecule with homology to L1CAM precursor
[Homo sapiens]
Length = 1224
Score = 71.2 bits (173), Expect = 2e-13
Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 8 ESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEP 67
E D KPLK GS +R ++ +S DSLV+YGEG +G F+EDGSFIG Y+G KEK
Sbjct: 1151 EYSDSDEKPLK-GSLRSLNRDMQPTESADSLVEYGEGDHGLFSEDGSFIGAYAGSKEKGS 1209
Query: 68 AEGNESSEAPSPVNA 82
E N SS A P+ A
Sbjct: 1210 VESNGSSTATFPLRA 1224
>gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]
Length = 880
Score = 30.4 bits (67), Expect = 0.31
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 13 DHKPLKKGSRTPSDRTV-----KKEDSDDSLVDYGEGVNG--QFNEDGSFIGQYS--GKK 63
DH+P K+ SR P ++ D L+ G G DG+ +G+ GK+
Sbjct: 785 DHRPEKQPSRIPRPLAYVFLGPARQPPKDRLLRAVLGSKGGEASRVDGASVGEEEEEGKE 844
Query: 64 EKEPAEGNESSEAP 77
EKEPA ESS P
Sbjct: 845 EKEPAAPLESSPQP 858
>gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo
sapiens]
Length = 554
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 7 LESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSG----- 61
L+S ++ +P+K + P D ++ED+ EGV + ++G Q +G
Sbjct: 390 LKSTVQNSRPIKTATTLPDDMITQREDA--------EGVAAEEEQEGDSGEQETGATDAR 441
Query: 62 KKEKEPAEGNESSEAPSP 79
+ ++PA E++ P P
Sbjct: 442 PRRRKPARLLEATAKPEP 459
>gi|239582765 ral guanine nucleotide dissociation stimulator-like
3 isoform 1 [Homo sapiens]
Length = 716
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 26 DRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIG---QYSGKKEKEPAEGNESSEAPSPV 80
+RT KE + L D+GE EDG+ + + + PAEG S+APSP+
Sbjct: 2 ERTAGKELALAPLQDWGEET-----EDGAVYSVSLRRQRSQRRSPAEGPGGSQAPSPI 54
>gi|239582763 ral guanine nucleotide dissociation stimulator-like
3 isoform 2 [Homo sapiens]
Length = 710
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 26 DRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIG---QYSGKKEKEPAEGNESSEAPSPV 80
+RT KE + L D+GE EDG+ + + + PAEG S+APSP+
Sbjct: 2 ERTAGKELALAPLQDWGEET-----EDGAVYSVSLRRQRSQRRSPAEGPGGSQAPSPI 54
>gi|19923191 minichromosome maintenance complex component 3
associated protein [Homo sapiens]
Length = 1980
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 11 AEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQF--NEDGSFIGQYSGKKEK--- 65
AED PL +G P R V+ + +G + F N++ +G KKE
Sbjct: 309 AEDSDPLSRGDHPPDKRPVRLNRPRGGTL-FGRTIQDVFKSNKEVGRLGNKEAKKETGFV 367
Query: 66 EPAE--------GNESSEAPSPVNAMN 84
E AE GN+S APS + +N
Sbjct: 368 ESAESDHMAIPGGNQSVLAPSRIPGVN 394
>gi|209862861 hypothetical protein LOC9840 [Homo sapiens]
Length = 521
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 24 PSDRTVKKEDSDDSLVDYGEGVNG--QFNEDGSFIGQYSGKKEKEPAEGNESSEAPSP 79
P T K+ D +++ + V QF + S +GQ+S + PAEG + +P P
Sbjct: 302 PPHNTPKRNSLDQVVLEVMDKVKEEKQFLQQDSDLGQFSQEDPVPPAEGKKLPTSPYP 359
>gi|149363704 hypothetical protein LOC9840 [Homo sapiens]
Length = 521
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 24 PSDRTVKKEDSDDSLVDYGEGVNG--QFNEDGSFIGQYSGKKEKEPAEGNESSEAPSP 79
P T K+ D +++ + V QF + S +GQ+S + PAEG + +P P
Sbjct: 302 PPHNTPKRNSLDQVVLEVMDKVKEEKQFLQQDSDLGQFSQEDPVPPAEGKKLPTSPYP 359
>gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)
[Homo sapiens]
Length = 731
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 5 RSLESDAEDHKPLKKGSRTPSDRTVKKEDSD 35
++LE D +D P KKG + + R ++E S+
Sbjct: 641 KTLEEDVDDRAPSKKGKKRKAQREEEQEHSN 671
>gi|154090959 hypothetical protein LOC55747 [Homo sapiens]
Length = 1253
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 10 DAEDHKPLK--KGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKK---E 64
+A+ K LK K RTPSD D +D+L + + F+ GS G +SG K +
Sbjct: 228 EAKPRKTLKEKKERRTPSD------DEEDNLFTPPKLTDEDFSPFGSGGGLFSGGKGLFD 281
Query: 65 KEPAEGNESSEAP 77
E E + +EAP
Sbjct: 282 DEDEESDLFTEAP 294
>gi|5031977 nicotinamide phosphoribosyltransferase precursor [Homo
sapiens]
Length = 491
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 11 AEDHKPLKKGS----RTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKE 66
A+ +K KKG RTP+ V E+ L +YG+ + ++G YS + ++
Sbjct: 419 ADPNKRSKKGRLSLHRTPAGNFVTLEEGKGDLEEYGQDLLHTVFKNGKVTKSYSFDEIRK 478
Query: 67 PAEGNESSEA 76
A+ N EA
Sbjct: 479 NAQLNIELEA 488
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 32 EDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGNESSE 75
ED +D + + NG +EDG + S + E E + NE +
Sbjct: 648 EDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDD 691
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 32 EDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGNESSE 75
ED +D + + NG +EDG + S + E E + NE +
Sbjct: 648 EDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDD 691
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 32 EDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGNESSE 75
ED +D + + NG +EDG + S + E E + NE +
Sbjct: 685 EDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDD 728
>gi|7662270 synaptic vesicle protein 2B homolog [Homo sapiens]
Length = 683
Score = 27.3 bits (59), Expect = 2.6
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 20 GSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGNESSEAPSP 79
G PSD + +S+ + G ED + G+Y G + + ++ APS
Sbjct: 11 GGYAPSDGYYRGNESNPEEDAQSDVTEGHDEEDEIYEGEYQGIPHPDDVKAKQAKMAPSR 70
Query: 80 VNAM 83
++++
Sbjct: 71 MDSL 74
>gi|73695465 synaptic vesicle glycoprotein 2C [Homo sapiens]
Length = 727
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 32 EDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGNESSEAPSPVNAMNSFV 87
E+ DD GE NG+ N+D G E + E PS A +S V
Sbjct: 52 EEDDDDYYPAGETYNGEANDDEGSSEATEGHDEDDEIYEGEYQGIPSMNQAKDSIV 107
>gi|54124343 hypothetical protein LOC387680 [Homo sapiens]
Length = 1341
Score = 27.3 bits (59), Expect = 2.6
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 10 DAEDHKPLK--KGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKK---E 64
+A+ K LK K RTPSD D +D+L + + F+ GS G +SG K +
Sbjct: 316 EAKPRKTLKEKKERRTPSD------DEEDNLFAPPKLTDEDFSPFGSGGGLFSGGKGLFD 369
Query: 65 KEPAEGNESSEAP 77
E E + +EAP
Sbjct: 370 DEDEESDLFTEAP 382
>gi|6912398 general transcription factor IIIC, polypeptide 3, 102kDa
[Homo sapiens]
Length = 886
Score = 27.3 bits (59), Expect = 2.6
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 8 ESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNED--------------- 52
E E+ K +K S + +E+ DDS V G+N ++D
Sbjct: 22 ERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGINSTKSQDKDVNEGETSDGVRKS 81
Query: 53 -----GSFIGQYSGKKEKEPAEGNESSEAPSP 79
S +G+ +E+E E E E +P
Sbjct: 82 VHKVFASMLGENEDDEEEEEEEEEEEEEEETP 113
>gi|5729790 CCCTC-binding factor [Homo sapiens]
Length = 727
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 16 PLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGNESSE 75
P KK P RT + + + + + E N E+ I + + + EPAEG E
Sbjct: 647 PAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIEN--IIVEVKKEPDAEPAEGEEEEA 704
Query: 76 APSPVNAMN 84
P+ +A N
Sbjct: 705 QPAATDAPN 713
>gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens]
Length = 872
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 5 RSLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKE 64
+ E+D+ + KK S D+ KKEDS+ + N + + D SF + E
Sbjct: 313 KQAENDSSNDDKTKK-SEGDGDKEEKKEDSEKEAKKSSKKRNRKHSGDDSFDEGSVSESE 371
Query: 65 KEPAEGNESSEAPSPVNAM 83
E G E A+
Sbjct: 372 SESESGQAEEEKEEAEEAL 390
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.303 0.125 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,883,030
Number of Sequences: 37866
Number of extensions: 172405
Number of successful extensions: 502
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 69
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.