Guide to the Human Genome
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Name: HEPH Sequence: fasta or formatted (891aa) NCBI GI: 7662254
Description:

hephaestin isoform b

Referenced in:

Coagulation
Iron, Copper, and Arsenic Metabolism

Other entries for this name:
alt prot [1160aa] hephaestin isoform c
alt prot [1161aa] hephaestin isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         60           3
 C cysteine            1.3         12           1
 D aspartate           5.3         47           2
 E glutamate           6.3         56           2
 F phenylalanine       5.1         45           2
 G glycine             8.4         75           2
 H histidine           3.9         35           2
 I isoleucine          4.4         39           1
 K lysine              4.0         36           2
 L leucine             8.3         74           3
 M methionine          3.7         33           1
 N asparagine          4.2         37           2
 P proline             5.1         45           2
 Q glutamine           4.0         36           1
 R arginine            5.1         45           2
 S serine              5.6         50           3
 T threonine           5.3         47           2
 V valine              7.3         65           2
 W tryptophan          2.1         19           1
 Y tyrosine            3.9         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hephaestin isoform b 
HEPH                  1.000   hephaestin isoform a 
HEPH                  0.997   hephaestin isoform c 
HEPHL1                0.476   hephaestin-like 1 
CP                    0.441   ceruloplasmin precursor 
F8                    0.198   coagulation factor VIII isoform a precursor 
F5                    0.187   coagulation factor V precursor 
CNTFR                 0.004   ciliary neurotrophic factor receptor preproprotein [...
CNTFR                 0.004   ciliary neurotrophic factor receptor preproprotein [H...
TMPO                  0.004   thymopoietin isoform beta 
LOC338667             0.004   PREDICTED: hypothetical protein LOC338667 
LOC338667             0.003   PREDICTED: hypothetical protein LOC338667 
LOC338667             0.003   PREDICTED: hypothetical protein LOC338667 
POLR2B                0.003   DNA directed RNA polymerase II polypeptide B 
BCAR3                 0.003   breast cancer antiestrogen resistance 3 
TDRD10                0.003   tudor domain containing 10 isoform a 
TDRD10                0.003   tudor domain containing 10 isoform b 
DDR2                  0.003   discoidin domain receptor family, member 2 precursor...
DDR2                  0.003   discoidin domain receptor family, member 2 precursor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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