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Search of human proteins with 7661532
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7661532 nin one binding protein [Homo sapiens]
(412 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7661532 nin one binding protein [Homo sapiens] 836 0.0
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 37 0.033
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 37 0.033
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 37 0.033
gi|16418351 coiled-coil domain containing 97 [Homo sapiens] 37 0.033
gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b... 36 0.056
gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform... 36 0.056
gi|38788260 bromodomain PHD finger transcription factor isoform ... 36 0.073
gi|38788274 bromodomain PHD finger transcription factor isoform ... 36 0.073
gi|23346412 cysteine-serine-rich nuclear protein 3 [Homo sapiens] 34 0.21
gi|170763500 SET translocation (myeloid leukemia-associated) iso... 34 0.28
gi|170763498 SET translocation (myeloid leukemia-associated) iso... 34 0.28
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 34 0.28
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 34 0.28
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 34 0.28
gi|61966919 hypothetical protein LOC442444 [Homo sapiens] 34 0.28
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 33 0.36
gi|110349719 titin isoform N2-A [Homo sapiens] 33 0.47
gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F... 33 0.47
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 33 0.47
gi|156139137 hypothetical protein LOC80017 isoform c [Homo sapiens] 33 0.47
gi|156139135 hypothetical protein LOC80017 isoform b [Homo sapiens] 33 0.47
gi|156139133 hypothetical protein LOC80017 isoform a [Homo sapiens] 33 0.47
gi|156139131 hypothetical protein LOC80017 isoform a [Homo sapiens] 33 0.47
gi|156139129 hypothetical protein LOC80017 isoform a [Homo sapiens] 33 0.47
gi|157694511 nucleolar complex associated 2 homolog [Homo sapiens] 33 0.47
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 33 0.62
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 33 0.62
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 33 0.62
gi|115529475 polymerase (RNA) III (DNA directed) polypeptide G (... 33 0.62
>gi|7661532 nin one binding protein [Homo sapiens]
Length = 412
Score = 836 bits (2160), Expect = 0.0
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 1 MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP 60
MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP
Sbjct: 1 MAPVEHVVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLP 60
Query: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE 120
EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE
Sbjct: 61 EYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE 120
Query: 121 TPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGE 180
TPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGE
Sbjct: 121 TPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGE 180
Query: 181 DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFA 240
DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFA
Sbjct: 181 DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPEDVRVGCLTTDFA 240
Query: 241 MQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTV 300
MQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTV
Sbjct: 241 MQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTV 300
Query: 301 SDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTN 360
SDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTN
Sbjct: 301 SDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTN 360
Query: 361 VFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 412
VFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR
Sbjct: 361 VFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKKFVKKR 412
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 37.0 bits (84), Expect = 0.033
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 163 PLPNIDHELQELLI---DRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQ 219
P P D L+ D GE+ EEEE+EE +D D+ +D+G + N +++
Sbjct: 47 PQPEPDERLEAAACEVNDLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKE 106
Query: 220 ELEQCD-VPEDV 230
+CD PED+
Sbjct: 107 PEIRCDEKPEDL 118
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 37.0 bits (84), Expect = 0.033
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 163 PLPNIDHELQELLI---DRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQ 219
P P D L+ D GE+ EEEE+EE +D D+ +D+G + N +++
Sbjct: 248 PQPEPDERLEAAACEVNDLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKE 307
Query: 220 ELEQCD-VPEDV 230
+CD PED+
Sbjct: 308 PEIRCDEKPEDL 319
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 37.0 bits (84), Expect = 0.033
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 163 PLPNIDHELQELLI---DRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQ 219
P P D L+ D GE+ EEEE+EE +D D+ +D+G + N +++
Sbjct: 248 PQPEPDERLEAAACEVNDLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKE 307
Query: 220 ELEQCD-VPEDV 230
+CD PED+
Sbjct: 308 PEIRCDEKPEDL 319
>gi|16418351 coiled-coil domain containing 97 [Homo sapiens]
Length = 343
Score = 37.0 bits (84), Expect = 0.033
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 135 KPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGEDVPS-EEEEEEENG 193
+PP+ G AC NL S+ + ELQ+ L+ + E+ + EEEEEE
Sbjct: 206 QPPKPGSPGRPACPLSNLLLQSYE---------ERELQQRLLQQQEEEEACLEEEEEEED 256
Query: 194 FEDRKDDSDDDGGGWITPSNIKQIQQE 220
++ S D W+ S + I +E
Sbjct: 257 SDEEDQRSGKDSEAWVPDSEERLILRE 283
>gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b
[Homo sapiens]
Length = 933
Score = 36.2 bits (82), Expect = 0.056
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 135 KPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGEDVPSEEEEEEE 191
+P T SA + L ++SF FWR PLP ID +++ G+ P EEE E
Sbjct: 418 RPEVGTTSQDSALLDQEL-YNSFHFWRTPLPEIDLDIELEQNSGGKPSPEGPEEESE 473
>gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform a
[Homo sapiens]
Length = 950
Score = 36.2 bits (82), Expect = 0.056
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 135 KPPQETEKGHSACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGEDVPSEEEEEEE 191
+P T SA + L ++SF FWR PLP ID +++ G+ P EEE E
Sbjct: 435 RPEVGTTSQDSALLDQEL-YNSFHFWRTPLPEIDLDIELEQNSGGKPSPEGPEEESE 490
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 35.8 bits (81), Expect = 0.073
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 168 DHELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVP 227
DHE +E + ED+ SEEEEEE+ E+ +D DD+ +++++ + D P
Sbjct: 128 DHESEEE--EEEEDMVSEEEEEEDGDAEETQDSEDDEE---------DEMEEDDDDSDYP 176
Query: 228 EDV 230
E++
Sbjct: 177 EEM 179
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 35.8 bits (81), Expect = 0.073
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 168 DHELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVP 227
DHE +E + ED+ SEEEEEE+ E+ +D DD+ +++++ + D P
Sbjct: 128 DHESEEE--EEEEDMVSEEEEEEDGDAEETQDSEDDEE---------DEMEEDDDDSDYP 176
Query: 228 EDV 230
E++
Sbjct: 177 EEM 179
>gi|23346412 cysteine-serine-rich nuclear protein 3 [Homo sapiens]
Length = 585
Score = 34.3 bits (77), Expect = 0.21
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 184 SEEEEEEENGFEDRKDDSDDDGGGWI 209
S+EEEEEE E+ +DD DD G G++
Sbjct: 369 SDEEEEEEEEEEEEEDDDDDKGDGFV 394
Score = 30.0 bits (66), Expect = 4.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 183 PSEEEEEEENGFEDRKDDSDDDGGG 207
PSE +EEEE E+ +++ DDD G
Sbjct: 366 PSESDEEEEEEEEEEEEEDDDDDKG 390
>gi|170763500 SET translocation (myeloid leukemia-associated)
isoform 1 [Homo sapiens]
Length = 290
Score = 33.9 bits (76), Expect = 0.28
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 12/52 (23%)
Query: 160 WRNPL-----PNIDHELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGG 206
W NPL P++D E GE ++++EEE G ED ++ D+D G
Sbjct: 226 WPNPLQYYLVPDMDDE-------EGEGEEDDDDDEEEEGLEDIDEEGDEDEG 270
>gi|170763498 SET translocation (myeloid leukemia-associated)
isoform 2 [Homo sapiens]
Length = 277
Score = 33.9 bits (76), Expect = 0.28
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 12/52 (23%)
Query: 160 WRNPL-----PNIDHELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGG 206
W NPL P++D E GE ++++EEE G ED ++ D+D G
Sbjct: 213 WPNPLQYYLVPDMDDE-------EGEGEEDDDDDEEEEGLEDIDEEGDEDEG 257
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 33.9 bits (76), Expect = 0.28
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 181 DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPED 229
+ P EEE++E+G ED +++ +++ G P ++ ++E E+ D ED
Sbjct: 154 EAPDSEEEDDEDGDEDDEEEEENEAG---PPEGYEEEEEEEEEEDEDED 199
Score = 32.3 bits (72), Expect = 0.80
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 168 DHELQELLIDRGEDVPSEEEEEEENGF--EDRKDDSDDDG 205
D E + ++ GE EEEEEEE G E RK D++DDG
Sbjct: 228 DEEDDDDYVEEGE----EEEEEEEGGLRGEKRKRDAEDDG 263
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 33.9 bits (76), Expect = 0.28
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 181 DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPED 229
+ P EEE++E+G ED +++ +++ G P ++ ++E E+ D ED
Sbjct: 113 EAPDSEEEDDEDGDEDDEEEEENEAG---PPEGYEEEEEEEEEEDEDED 158
Score = 32.3 bits (72), Expect = 0.80
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 168 DHELQELLIDRGEDVPSEEEEEEENGF--EDRKDDSDDDG 205
D E + ++ GE EEEEEEE G E RK D++DDG
Sbjct: 187 DEEDDDDYVEEGE----EEEEEEEGGLRGEKRKRDAEDDG 222
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 33.9 bits (76), Expect = 0.28
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 181 DVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPED 229
+ P EEE++E+G ED +++ +++ G P ++ ++E E+ D ED
Sbjct: 106 EAPDSEEEDDEDGDEDDEEEEENEAG---PPEGYEEEEEEEEEEDEDED 151
Score = 32.3 bits (72), Expect = 0.80
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 168 DHELQELLIDRGEDVPSEEEEEEENGF--EDRKDDSDDDG 205
D E + ++ GE EEEEEEE G E RK D++DDG
Sbjct: 180 DEEDDDDYVEEGE----EEEEEEEGGLRGEKRKRDAEDDG 215
>gi|61966919 hypothetical protein LOC442444 [Homo sapiens]
Length = 1035
Score = 33.9 bits (76), Expect = 0.28
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 94 EAEFVGVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETEKGHSACEPENLE 153
E GVSHL+ EP K+ VSS Q P S HL +P+PP ET H EP
Sbjct: 513 EPSETGVSHLRPEPPKILVSSLHQ---APPESSVSHL--RPEPP-ETGVSHLRPEPPKTR 566
Query: 154 FSSFMFWRNPLPNIDHELQELLIDRGEDVPSEEEE 188
S + P + H E R +P E E
Sbjct: 567 MYS-LRPEPPDTGVSHLCPEPPKTRVSSLPPEPPE 600
Score = 32.7 bits (73), Expect = 0.62
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 99 GVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETEKGHSACEPE 150
GVSHL+ EP K +VSS PE PL HL +P+PP E G S PE
Sbjct: 734 GVSHLRPEPPKPRVSS--LRPE-PLETRVSHL--RPEPP---ETGVSHLHPE 777
Score = 31.6 bits (70), Expect = 1.4
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 99 GVSHLKQEPQKVKVSS-SIQHPETPLHISGFHLPYKPKPPQETEKGHSACEP 149
GVSHL+ EP K +VSS ++ PET + HL P+PP E + H EP
Sbjct: 446 GVSHLRPEPPKTRVSSLHLEPPETGVS----HL--CPEPP-EKDVSHLRPEP 490
Score = 30.8 bits (68), Expect = 2.3
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 93 LEAEFVGVSHLKQEPQKVKVSS-SIQHPETP-----LHISGFHLPYKPKPPQETEKGHSA 146
LE GVSHL+ EP K +VSS ++ PET L G + + P +T H
Sbjct: 236 LEPPETGVSHLRPEPPKTQVSSLHLEPPETGVSHLYLEPPGTGVSHLCPEPPKTRVSHLH 295
Query: 147 CEP 149
EP
Sbjct: 296 REP 298
Score = 30.4 bits (67), Expect = 3.1
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 99 GVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETEKGHSACEP 149
GVSHL EP K +VSS P P HL P+PP ET H EP
Sbjct: 650 GVSHLCPEPPKTRVSSL---PPEPPETGVSHL--CPEPP-ETRVSHLRPEP 694
Score = 30.0 bits (66), Expect = 4.0
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 7/41 (17%)
Query: 99 GVSHLKQEPQKVKVSS-SIQHPETPLHISGFHLPYKPKPPQ 138
GVSHL+ +P K +VSS ++ PET + HL +P+PP+
Sbjct: 218 GVSHLRPQPPKTQVSSLHLEPPETGVS----HL--RPEPPK 252
Score = 30.0 bits (66), Expect = 4.0
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 100 VSHLKQEPQKVKVSSSIQHPETP-LHISGFHLPYKPKPPQETEKGHSACEPENLEFS 155
VSHL+ EP + VS HPE P +S H P+PP ET H EP S
Sbjct: 315 VSHLRPEPSETGVSH--LHPEPPKTLVSSLH----PEPP-ETGVSHLCPEPPETRVS 364
Score = 29.3 bits (64), Expect = 6.8
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 94 EAEFVGVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQ 138
E GVSHL EP K VSS HPE P HL P+PP+
Sbjct: 321 EPSETGVSHLHPEPPKTLVSS--LHPEPP-ETGVSHL--CPEPPE 360
Score = 29.3 bits (64), Expect = 6.8
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 99 GVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPK------PPQETEKGHSACEPE 150
GVSHL+ EP K ++ S PE P P PK PP+ E G S PE
Sbjct: 626 GVSHLRPEPPKTRMYS--LRPEPPNTGVSHLCPEPPKTRVSSLPPEPPETGVSHLCPE 681
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 33.5 bits (75), Expect = 0.36
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 162 NPLPNIDHELQELLIDRGEDVPSE---EEEEEENGFEDRKDDSDDDGG 206
+PL + + E +E+++ E+ E EEEEEE D D+ DDD G
Sbjct: 3 SPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEG 50
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 33.1 bits (74), Expect = 0.47
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 33/208 (15%)
Query: 25 KNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGDYPSLSATDI 84
K I ++ V + K + + P E K+P P L+ + + D S A ++
Sbjct: 8980 KRIEVTKKAVKKDAKKVVAKPKEMTPREEIVKKPPPP-TTLIPAKAPEIIDVSS-KAEEV 9037
Query: 85 QVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETEKGH 144
+++ +T + E + +E + V H E + I F PY E E
Sbjct: 9038 KIMTITRKKEVQ--------KEKEAVYEKKQAVHKEKRVFIESFEEPY-----DELE--- 9081
Query: 145 SACEPENLEFSSFMFWRNPLPNIDHELQELLIDRGEDVPSEEEEEEENGFE--DRKDDSD 202
EP F ++ P D + +E+ ++ ++V E EE+ E G E +R++ D
Sbjct: 9082 --VEPYTEPFEQ-PYYEEP----DEDYEEIKVEAKKEVHEEWEEDFEEGQEYYEREEGYD 9134
Query: 203 DDGGGWITPSNIKQIQQELEQCDVPEDV 230
+ W ++ QE E V ++V
Sbjct: 9135 EGEEEW------EEAYQEREVIQVQKEV 9156
>gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F
subunit [Homo sapiens]
Length = 1977
Score = 33.1 bits (74), Expect = 0.47
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 164 LPNIDHELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQ 223
+P ++ E +E G D+ EEEEEEE +++ +++G G + ++++ + +
Sbjct: 790 VPGVEKEEEEGARREGADMEEEEEEEEE-----EEEEEEEEGAGGV--ELLQEVVPKEKV 842
Query: 224 CDVPEDVRVGCLTTDFAMQNVLLQMGLHVL 253
+PE CL+ Q L+ G H L
Sbjct: 843 VPIPEGSAFFCLS-----QTNPLRKGCHTL 867
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 33.1 bits (74), Expect = 0.47
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 170 ELQELLIDRGE------DVPSEEEEEEENG-------FEDRKDDSDDDGGGWITPSNIKQ 216
++ E D GE D P +E+EE+E G E+ +D D+DG ++
Sbjct: 98 DMDEKEEDEGEEYSEDNDEPGDEDEEDEEGDREEEEEIEEEDEDDDEDGEDVEDEEEEEE 157
Query: 217 IQQELEQCDVPEDVRVGCLTT 237
++E E+ + ED ++ C T
Sbjct: 158 EEEEEEEEEENEDHQMNCHNT 178
>gi|156139137 hypothetical protein LOC80017 isoform c [Homo sapiens]
Length = 564
Score = 33.1 bits (74), Expect = 0.47
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 99 GVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETE 141
G+ HL + + +K S S+ H + L +GF + +PP+ET+
Sbjct: 298 GIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETD 340
>gi|156139135 hypothetical protein LOC80017 isoform b [Homo sapiens]
Length = 621
Score = 33.1 bits (74), Expect = 0.47
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 99 GVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETE 141
G+ HL + + +K S S+ H + L +GF + +PP+ET+
Sbjct: 315 GIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETD 357
>gi|156139133 hypothetical protein LOC80017 isoform a [Homo sapiens]
Length = 616
Score = 33.1 bits (74), Expect = 0.47
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 99 GVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETE 141
G+ HL + + +K S S+ H + L +GF + +PP+ET+
Sbjct: 310 GIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETD 352
>gi|156139131 hypothetical protein LOC80017 isoform a [Homo sapiens]
Length = 616
Score = 33.1 bits (74), Expect = 0.47
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 99 GVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETE 141
G+ HL + + +K S S+ H + L +GF + +PP+ET+
Sbjct: 310 GIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETD 352
>gi|156139129 hypothetical protein LOC80017 isoform a [Homo sapiens]
Length = 616
Score = 33.1 bits (74), Expect = 0.47
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 99 GVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETE 141
G+ HL + + +K S S+ H + L +GF + +PP+ET+
Sbjct: 310 GIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETD 352
>gi|157694511 nucleolar complex associated 2 homolog [Homo sapiens]
Length = 749
Score = 33.1 bits (74), Expect = 0.47
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 185 EEEEEEENGFED--RKDDSDDDGGGWITPSNIKQIQQ----ELEQCDVPED 229
++EE+EE G ED +D D D + P ++Q+ Q ELE + ED
Sbjct: 698 DDEEDEEEGEEDSSNSEDGDPDAEAGLAPGELQQLAQGPEDELEDLQLSED 748
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 32.7 bits (73), Expect = 0.62
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 177 DRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQELEQ 223
DR EEEEEEE +D +++ DD+G +K+ ++E E+
Sbjct: 264 DRNLKTEEEEEEEEEEEEDDEEEEGDDEGQKSREAPILKEFKEEGEE 310
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 32.7 bits (73), Expect = 0.62
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 170 ELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNI 214
E +E+ D GED EEEEE +ED +++ D++G G P+++
Sbjct: 128 EEEEMEEDLGED-----EEEEEEDYEDEEEEEDEEGLGPPGPASL 167
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 32.7 bits (73), Expect = 0.62
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 177 DRGEDVPSEEEEEEENGFEDRKDDSDDD-------GGGWITPSNIKQIQQELEQCDVPED 229
++ E+ EEEEEEE +++ +++ DDD GG+I + E E D ED
Sbjct: 37 EKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDE--ADVDDEYEDEDQWED 94
Query: 230 VRVGCLTTDFAMQNVLL 246
L + NV+L
Sbjct: 95 GAEDILEKASNIDNVVL 111
>gi|115529475 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) [Homo sapiens]
Length = 223
Score = 32.7 bits (73), Expect = 0.62
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 163 PLPNIDHELQEL--LIDRGEDVPSEEEEEEENGFEDRKDDSDDD 204
PL N + L+++ L RG+ S+EE EE+ G +++ + DDD
Sbjct: 134 PLTNTEDVLKKMEELEKRGDGEKSDEENEEKEGSKEKSKEGDDD 177
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,897,154
Number of Sequences: 37866
Number of extensions: 852980
Number of successful extensions: 6952
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 5382
Number of HSP's gapped (non-prelim): 1125
length of query: 412
length of database: 18,247,518
effective HSP length: 105
effective length of query: 307
effective length of database: 14,271,588
effective search space: 4381377516
effective search space used: 4381377516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.