Guide to the Human Genome
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Name: GCAT Sequence: fasta or formatted (419aa) NCBI GI: 7657118
Description:

glycine C-acetyltransferase precursor

Referenced in:

Amino Acid Catabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         47           2
 C cysteine            2.4         10           2
 D aspartate           4.8         20           2
 E glutamate           5.3         22           2
 F phenylalanine       3.6         15           1
 G glycine            10.3         43           2
 H histidine           2.9         12           1
 I isoleucine          6.0         25           2
 K lysine              3.3         14           1
 L leucine            10.7         45           2
 M methionine          2.6         11           1
 N asparagine          2.4         10           2
 P proline             4.3         18           2
 Q glutamine           3.6         15           1
 R arginine            7.4         31           2
 S serine              6.9         29           2
 T threonine           3.6         15           2
 V valine              5.7         24           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycine C-acetyltransferase precursor 
ALAS2                 0.243   5-aminolevulinate synthase 2 isoform c precursor [Ho...
ALAS2                 0.243   5-aminolevulinate synthase 2 isoform b precursor [Ho...
ALAS2                 0.243   5-aminolevulinate synthase 2 isoform a precursor [Ho...
ALAS1                 0.220   5-aminolevulinate synthase 1 
ALAS1                 0.220   5-aminolevulinate synthase 1 
SPTLC2                0.199   serine palmitoyltransferase, long chain base subunit ...
SPTLC3                0.188   serine palmitoyltransferase, long chain base subuni...
SPTLC1                0.136   serine palmitoyltransferase subunit 1 isoform a [Homo...
SPTLC1                0.011   serine palmitoyltransferase subunit 1 isoform b [Hom...
CDH6                  0.006   cadherin 6, type 2 preproprotein 
C20orf95              0.006   PREDICTED: chromosome 20 open reading frame 95 [Hom...
C20orf95              0.006   PREDICTED: chromosome 20 open reading frame 95 [Hom...
C20orf95              0.006   PREDICTED: Rho GTPase-activating protein 18-like [H...
DMXL2                 0.006   Dmx-like 2 
ZNF462                0.006   zinc finger protein 462 
SFRS8                 0.005   splicing factor, arginine/serine-rich 8 
SLC6A1                0.005   solute carrier family 6 (neurotransmitter transport...
TRPM4                 0.005   transient receptor potential cation channel, subfami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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