Search of human proteins with 7657015

Search of human proteins with 7657015

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7657015 hypothetical protein LOC51493 [Homo sapiens]
         (505 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7657015 hypothetical protein LOC51493 [Homo sapiens]              1021   0.0  
gi|145580615 KRI1 homolog [Homo sapiens]                               33   0.47 
gi|55770846 catenin, alpha 2 [Homo sapiens]                            30   6.7  
gi|157738647 plexin A4 isoform 3 [Homo sapiens]                        29   8.8  
gi|157738645 plexin A4 isoform 1 [Homo sapiens]                        29   8.8  
gi|157738643 plexin A4 isoform 2 [Homo sapiens]                        29   8.8  
gi|38201675 syndecan 4 precursor [Homo sapiens]                        29   8.8  

>gi|7657015 hypothetical protein LOC51493 [Homo sapiens]
          Length = 505

 Score = 1021 bits (2640), Expect = 0.0
 Identities = 505/505 (100%), Positives = 505/505 (100%)

Query: 1   MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 60
           MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
Sbjct: 1   MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 60

Query: 61  GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 120
           GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
Sbjct: 61  GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 120

Query: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 180
           NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
Sbjct: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 180

Query: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
           REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
Sbjct: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240

Query: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 300
           YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 300

Query: 301 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
           PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
Sbjct: 301 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360

Query: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420
           HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420

Query: 421 ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD 480
           ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD 480

Query: 481 VVNTCHDAGISKKAIKLRPIAVIKG 505
           VVNTCHDAGISKKAIKLRPIAVIKG
Sbjct: 481 VVNTCHDAGISKKAIKLRPIAVIKG 505


>gi|145580615 KRI1 homolog [Homo sapiens]
          Length = 709

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 169 EEALEMGVDWSLREGYA----WAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLG---- 220
           EE LE   +W   +G      W++ + HCE+    + AD +    R KKR  P  G    
Sbjct: 425 EEGLEDDWNWDTWDGPEQEGDWSQQELHCEDPNFNMDADYDPSQPRKKKREAPLTGKKKR 484

Query: 221 ----TLGAGNHYAEIQVVDEIFNEYAAKKMGIDHK 251
                   G      +  D+ F EY  +   +D++
Sbjct: 485 KSPFAAAVGQEKPVFEPGDKTFEEYLDEYYRLDYE 519


>gi|55770846 catenin, alpha 2 [Homo sapiens]
          Length = 905

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 452 LADMGIAIRVASPKLVMEEAPESYKNVT---DVVNTCHDAGISKKAIKLRPIA 501
           LADM   +R+ S   ++EEA E+ KN T   D+ N   + G  K+ +KL  +A
Sbjct: 140 LADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFG--KEMVKLNYVA 190


>gi|157738647 plexin A4 isoform 3 [Homo sapiens]
          Length = 492

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 87  DVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQA 146
           D++  YGF+ GN   F    PE V  PG    +     +L+R           KE  A  
Sbjct: 241 DIYYVYGFSSGNFVYFLTLQPEMVSPPGSTTKEQVYTSKLVRL---------CKEDTAFN 291

Query: 147 MFDHIPVGVGSKGV 160
            +  +P+G    GV
Sbjct: 292 SYVEVPIGCERSGV 305


>gi|157738645 plexin A4 isoform 1 [Homo sapiens]
          Length = 1894

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 87  DVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQA 146
           D++  YGF+ GN   F    PE V  PG    +     +L+R           KE  A  
Sbjct: 241 DIYYVYGFSSGNFVYFLTLQPEMVSPPGSTTKEQVYTSKLVRL---------CKEDTAFN 291

Query: 147 MFDHIPVGVGSKGV 160
            +  +P+G    GV
Sbjct: 292 SYVEVPIGCERSGV 305


>gi|157738643 plexin A4 isoform 2 [Homo sapiens]
          Length = 522

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 87  DVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQA 146
           D++  YGF+ GN   F    PE V  PG    +     +L+R           KE  A  
Sbjct: 241 DIYYVYGFSSGNFVYFLTLQPEMVSPPGSTTKEQVYTSKLVRL---------CKEDTAFN 291

Query: 147 MFDHIPVGVGSKGV 160
            +  +P+G    GV
Sbjct: 292 SYVEVPIGCERSGV 305


>gi|38201675 syndecan 4 precursor [Homo sapiens]
          Length = 198

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 20/65 (30%), Positives = 27/65 (41%)

Query: 106 DPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNA 165
           D E VV PG    D          +L++S + P        + +HIP   GS   +P   
Sbjct: 44  DDEDVVGPGQESDDFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEP 103

Query: 166 KDLEE 170
           K LEE
Sbjct: 104 KKLEE 108


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,596,714
Number of Sequences: 37866
Number of extensions: 820926
Number of successful extensions: 1611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1610
Number of HSP's gapped (non-prelim): 7
length of query: 505
length of database: 18,247,518
effective HSP length: 107
effective length of query: 398
effective length of database: 14,195,856
effective search space: 5649950688
effective search space used: 5649950688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.