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Search of human proteins with 76563921
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|76563921 chromosome 18 open reading frame 21 [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|76563921 chromosome 18 open reading frame 21 [Homo sapiens] 444 e-125
gi|28372563 growth arrest-specific 2 like 3 [Homo sapiens] 38 0.008
gi|40288197 GATA binding protein 6 [Homo sapiens] 34 0.11
gi|31543385 choline phosphate cytidylyltransferase 1 alpha [Homo... 33 0.19
gi|224451082 cytospin A [Homo sapiens] 33 0.25
gi|224451080 cytospin A [Homo sapiens] 33 0.25
gi|154350236 hypothetical protein LOC56204 [Homo sapiens] 32 0.43
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 32 0.56
gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens] 32 0.56
gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens] 32 0.56
gi|73623035 sperm associated antigen 5 [Homo sapiens] 31 0.73
gi|148612890 serine-arginine repressor protein [Homo sapiens] 31 0.73
gi|216548091 leucine zipper protein 1 [Homo sapiens] 31 0.73
gi|216548085 leucine zipper protein 1 [Homo sapiens] 31 0.73
gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Ho... 31 0.95
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 31 0.95
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 31 0.95
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 30 1.2
gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo s... 30 1.2
gi|169204941 PREDICTED: similar to Nucleolar protein 5A [Homo sa... 30 1.6
gi|169205573 PREDICTED: similar to Nucleolar protein 5A [Homo sa... 30 1.6
gi|169203848 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6
gi|189491742 ataxin 7 isoform b [Homo sapiens] 30 1.6
gi|4506797 ataxin 7 isoform a [Homo sapiens] 30 1.6
gi|33946327 nucleoporin 214kDa [Homo sapiens] 30 2.1
gi|102468717 mediator complex subunit 13 [Homo sapiens] 30 2.1
gi|122937341 hypothetical protein LOC388960 [Homo sapiens] 30 2.1
gi|150170718 zinc finger protein 292 [Homo sapiens] 30 2.1
gi|24497609 nucleoporin 62kDa [Homo sapiens] 29 2.8
gi|24497607 nucleoporin 62kDa [Homo sapiens] 29 2.8
>gi|76563921 chromosome 18 open reading frame 21 [Homo sapiens]
Length = 220
Score = 444 bits (1141), Expect = e-125
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MRQKHYLEAAARGLHDSCPGQARYLLWAYTSSHDDKSTFEETCPYCFQLLVLDNSRVRLK 60
MRQKHYLEAAARGLHDSCPGQARYLLWAYTSSHDDKSTFEETCPYCFQLLVLDNSRVRLK
Sbjct: 1 MRQKHYLEAAARGLHDSCPGQARYLLWAYTSSHDDKSTFEETCPYCFQLLVLDNSRVRLK 60
Query: 61 PKARLTPKIQKLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSF 120
PKARLTPKIQKLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSF
Sbjct: 61 PKARLTPKIQKLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSF 120
Query: 121 VSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNT 180
VSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNT
Sbjct: 121 VSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNT 180
Query: 181 SKTKKHFSQLKMLLSQNESQKIPKVDFRNFLSSLKGGLLK 220
SKTKKHFSQLKMLLSQNESQKIPKVDFRNFLSSLKGGLLK
Sbjct: 181 SKTKKHFSQLKMLLSQNESQKIPKVDFRNFLSSLKGGLLK 220
>gi|28372563 growth arrest-specific 2 like 3 [Homo sapiens]
Length = 694
Score = 37.7 bits (86), Expect = 0.008
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 61 PKARLTPKIQKLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSF 120
P+A+ P QKL + N +S VK + SK +++ T + ++
Sbjct: 544 PQAKPVPA-QKLKSALNLNQPVSVSSVSPVKATQKSKDKNIVSA-TKKQPQNKSAFQKTG 601
Query: 121 VSTLKSNPATPTSKLSLKTPERRT----------ANPNHDMSGS--KGKSPASVFRTPTS 168
S+LKS TP S +SL +T A H G GK+PAS+ + P+S
Sbjct: 602 PSSLKSPGRTPLSIVSLPQSSTKTQTAPKSAQTVAKSQHSTKGPPRSGKTPASIRKPPSS 661
Query: 169 GQSVSTCSSKNTSKTKK 185
+ + K T+K K+
Sbjct: 662 VKDADSGDKKPTAKKKE 678
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 33.9 bits (76), Expect = 0.11
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 104 CKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVF 163
C C +K HG R K ++T +R+ N N + S G S S+
Sbjct: 465 CNACGLYMKLHGVPRPLAM----------KKEGIQTRKRKPKNINKSKTCS-GNSNNSIP 513
Query: 164 RTPTSGQSVSTCSSKNTSKT 183
TPTS S S SKNTS T
Sbjct: 514 MTPTSTSSNSDDCSKNTSPT 533
>gi|31543385 choline phosphate cytidylyltransferase 1 alpha [Homo
sapiens]
Length = 367
Score = 33.1 bits (74), Expect = 0.19
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 78 RNYTLSFKEAKMVKKFKDSKS-----VLLITCKTCNRTVKHHGKSRSFV-STLKSNPATP 131
+ Y L + K+ KK KD + V + K+ + K KSR F+ S L+
Sbjct: 238 KKYHLQERVDKVKKKVKDVEEKSKEFVQKVEEKSIDLIQKWEEKSREFIGSFLEMFGPEG 297
Query: 132 TSKLSLKTPERR---TANPNHDMSGS--KGKSPASVFRTPTSGQSVSTCSSKNTSKTK 184
K LK + R +P S S + +SP+ FR P SG++ CS N S+ K
Sbjct: 298 ALKHMLKEGKGRMLQAISPKQSPSSSPTRERSPSPSFRWPFSGKTSPPCSPANLSRHK 355
>gi|224451082 cytospin A [Homo sapiens]
Length = 1117
Score = 32.7 bits (73), Expect = 0.25
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 24/132 (18%)
Query: 111 VKHHGKSRSFVSTLKSNPATPT--SKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTS 168
V+ H S S S P P S +L R + D+S +G SPAS+ T+
Sbjct: 913 VQEHLLRTSSASRPASLPRVPAMESAKTLSVSRRSSEEVKRDISAQEGASPASLMAMGTT 972
Query: 169 GQSVSTCSSKNTSKTKKHFSQLK----------------------MLLSQNESQKIPKVD 206
+S SS S T S+++ + Q +++ +D
Sbjct: 973 SPQLSLSSSPTASVTPTTRSRIREERKDPLSALAREYGGSKRNALLKWCQKKTEGYQNID 1032
Query: 207 FRNFLSSLKGGL 218
NF SS GL
Sbjct: 1033 ITNFSSSWNDGL 1044
>gi|224451080 cytospin A [Homo sapiens]
Length = 1117
Score = 32.7 bits (73), Expect = 0.25
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 24/132 (18%)
Query: 111 VKHHGKSRSFVSTLKSNPATPT--SKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTS 168
V+ H S S S P P S +L R + D+S +G SPAS+ T+
Sbjct: 913 VQEHLLRTSSASRPASLPRVPAMESAKTLSVSRRSSEEVKRDISAQEGASPASLMAMGTT 972
Query: 169 GQSVSTCSSKNTSKTKKHFSQLK----------------------MLLSQNESQKIPKVD 206
+S SS S T S+++ + Q +++ +D
Sbjct: 973 SPQLSLSSSPTASVTPTTRSRIREERKDPLSALAREYGGSKRNALLKWCQKKTEGYQNID 1032
Query: 207 FRNFLSSLKGGL 218
NF SS GL
Sbjct: 1033 ITNFSSSWNDGL 1044
>gi|154350236 hypothetical protein LOC56204 [Homo sapiens]
Length = 1076
Score = 32.0 bits (71), Expect = 0.43
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 22 ARYLLWAYTSSHDDKSTFEETCPYCFQL------LVLDNSRVRLKPKARLTPKIQKL--- 72
+ YL + S + S +TC QL L DN + K +L + K
Sbjct: 693 SEYLNKYESMSSNKDSKRPKTCEQNTQLNSIENYLNKDNEGFKCKKSDQLKNEQDKQEDP 752
Query: 73 LNREARNYTL--SFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNPAT 130
N +++NY+ S K+ + + VL T K N KH+ S ST +P T
Sbjct: 753 TNEKSQNYSQRRSIKDCLSTCEQPKNTEVLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQT 812
Query: 131 PTSKLSLKTPERRTANPNHDMSGS 154
LS P+R+T + D+ S
Sbjct: 813 GLPLLSSPVPQRKTQSGCFDLDSS 836
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 31.6 bits (70), Expect = 0.56
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 20/140 (14%)
Query: 62 KARLTPKIQKLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFV 121
K+ T + QKLL + R K+ + KKF+ S+S H K +S
Sbjct: 214 KSLTTKQKQKLLRKLDRLEKKKKKKDRKKKKFQKSRS--------------KHKKHKSSS 259
Query: 122 STLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNTS 181
S+ S+ ++ +++ S + E + N + K K + SG + S K+ S
Sbjct: 260 SSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRK------KNKCSGHNNSDSEEKDKS 313
Query: 182 KTKKHFSQLKMLLSQNESQK 201
K +K +L E K
Sbjct: 314 KKRKLHEELSSSHHNREKAK 333
>gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens]
Length = 861
Score = 31.6 bits (70), Expect = 0.56
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 65 LTPKIQKLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTL 124
L P+ +K R T S + V K +LL K +R + K ST
Sbjct: 300 LDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKDKEHLLTSTR 359
Query: 125 K-----SNPATPT--SKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSS 177
+ S PA + PE + A+P +K + P SV P+S S+S+ +S
Sbjct: 360 EILPSQSGPAQDSLLGSSGSSGPEPKVASP------AKSRPPNSVLPRPSSANSISSSTS 413
Query: 178 KNTS 181
N S
Sbjct: 414 SNHS 417
>gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens]
Length = 738
Score = 31.6 bits (70), Expect = 0.56
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 65 LTPKIQKLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTL 124
L P+ +K R T S + V K +LL K +R + K ST
Sbjct: 176 LDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKDKEHLLTSTR 235
Query: 125 K-----SNPATPT--SKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSS 177
+ S PA + PE + A+P +K + P SV P+S S+S+ +S
Sbjct: 236 EILPSQSGPAQDSLLGSSGSSGPEPKVASP------AKSRPPNSVLPRPSSANSISSSTS 289
Query: 178 KNTS 181
N S
Sbjct: 290 SNHS 293
>gi|73623035 sperm associated antigen 5 [Homo sapiens]
Length = 1193
Score = 31.2 bits (69), Expect = 0.73
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 123 TLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPT-----------SGQS 171
+L +P+ T K S++TP R ++ S +SPA TP+ +
Sbjct: 8 SLSLSPSPQTGKPSMRTPLRELTLQPGALTNSGKRSPACSSLTPSLCKLGLQEGSNNSSP 67
Query: 172 VSTCSSKNTSKTKKHFSQLKMLLS--QNESQKIP 203
V ++K T + +HFS L Q+ES + P
Sbjct: 68 VDFVNNKRTDLSSEHFSHSSKWLETCQHESDEQP 101
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 31.2 bits (69), Expect = 0.73
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 75 REARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRS------FVSTLKSNP 128
+E+R+ S+ ++K K +S +T R G+SRS S KS
Sbjct: 138 KESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQS 197
Query: 129 ATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNTSKTKKH 186
++P + S T R + ++ S KSP + T Q+ ++ S+++ +
Sbjct: 198 SSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSY 255
>gi|216548091 leucine zipper protein 1 [Homo sapiens]
Length = 1076
Score = 31.2 bits (69), Expect = 0.73
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Query: 71 KLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGK-SRSFVSTLKSNPA 129
KLL + L K+ K ++ + ++ K + K G S + VS +
Sbjct: 334 KLLASQLEEIKLQIKKQKELENGEVEGEDAFLSSKGRHERTKFRGHGSEASVSKHTAREL 393
Query: 130 TPTSKLS-LKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNTSKTKKHFS 188
+P K L+ E N N+ +S + SP+ R + + T +TKK
Sbjct: 394 SPQHKRERLRNREFALNNENYSLSNRQVSSPSFTNRRAAKASHMGVSTDSGTQETKKTED 453
Query: 189 QLKMLLSQNESQK 201
+ SQ+E +K
Sbjct: 454 RFVPGSSQSEGKK 466
>gi|216548085 leucine zipper protein 1 [Homo sapiens]
Length = 1076
Score = 31.2 bits (69), Expect = 0.73
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Query: 71 KLLNREARNYTLSFKEAKMVKKFKDSKSVLLITCKTCNRTVKHHGK-SRSFVSTLKSNPA 129
KLL + L K+ K ++ + ++ K + K G S + VS +
Sbjct: 334 KLLASQLEEIKLQIKKQKELENGEVEGEDAFLSSKGRHERTKFRGHGSEASVSKHTAREL 393
Query: 130 TPTSKLS-LKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNTSKTKKHFS 188
+P K L+ E N N+ +S + SP+ R + + T +TKK
Sbjct: 394 SPQHKRERLRNREFALNNENYSLSNRQVSSPSFTNRRAAKASHMGVSTDSGTQETKKTED 453
Query: 189 QLKMLLSQNESQK 201
+ SQ+E +K
Sbjct: 454 RFVPGSSQSEGKK 466
>gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Homo
sapiens]
Length = 984
Score = 30.8 bits (68), Expect = 0.95
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 121 VSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNT 180
+S++KS+ ++P S S+K+P ++PN+ S SPA++ + S S S ++++T
Sbjct: 265 LSSMKSSISSPPSHCSVKSP---VSSPNNVTLRSSVSSPANINNSRCSVSSPSNTNNRST 321
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 30.8 bits (68), Expect = 0.95
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 117 SRSFVSTL----KSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSV 172
S F+S++ K++ A P SKL +K P +R D+ S K+ A GQ +
Sbjct: 3326 SEDFLSSVDEENKADEAKPKSKLPVKVPLQRVEQQLSDLDTSVQKTVA------PQGQDM 3379
Query: 173 STCSSKNTSKTKKHFSQL 190
++ + N SK++ S L
Sbjct: 3380 ASIAPDNRSKSESDASSL 3397
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.8 bits (68), Expect = 0.95
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 112 KHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGS----KGKSPASVFRTPT 167
+H +SRS+ + +P S P R P H S S + +S AS+
Sbjct: 301 RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASL----- 355
Query: 168 SGQSVSTCSSKNTSKTKK 185
SG S S+ SS++ S KK
Sbjct: 356 SGSSSSSSSSRSRSPPKK 373
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 30.4 bits (67), Expect = 1.2
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 112 KHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRT---PTS 168
K G+ + +++N LS+K R D K K S + P++
Sbjct: 137 KERGEIEVDIQFMRNNMTASMFDLSMKDKSRNPFGKLKDKIKGKNKDSGSDTASAIIPST 196
Query: 169 GQSVSTCSSKNTSKTKKHFSQLKMLLSQNESQKIP 203
SV + ++ K KK S++K LLS++ QK P
Sbjct: 197 TPSVDS-DDESVVKDKKKKSKIKTLLSKSNLQKTP 230
>gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo
sapiens]
Length = 649
Score = 30.4 bits (67), Expect = 1.2
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 112 KHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRT---PTS 168
K G+ + +++N LS+K R D K K S + P++
Sbjct: 137 KERGEIEVDIQFMRNNMTASMFDLSMKDKSRNPFGKLKDKIKGKNKDSGSDTASAIIPST 196
Query: 169 GQSVSTCSSKNTSKTKKHFSQLKMLLSQNESQKIP 203
SV + ++ K KK S++K LLS++ QK P
Sbjct: 197 TPSVDS-DDESVVKDKKKKSKIKTLLSKSNLQKTP 230
>gi|169204941 PREDICTED: similar to Nucleolar protein 5A [Homo
sapiens]
Length = 166
Score = 30.0 bits (66), Expect = 1.6
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 29/153 (18%)
Query: 32 SHDDKSTFEETCPYCFQLLVLDNSRVRLKPKARLTPKIQKLLNREARNYTLSFKEAKMVK 91
+H D S+ E C + KPK + K Q++ + + ++SF + K K
Sbjct: 34 NHPDSSSTPERCEETSE-----------KPKKKKKQKPQEVPQEKTEDPSISFSKPKKKK 82
Query: 92 KFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDM 151
F SK L+ + ++ S S + KS+P T T + PE N +
Sbjct: 83 SF--SKEELM------SSDLEETAGSTSLLKRKKSSPKTET----VNDPEEA---GNRSV 127
Query: 152 SGSKGKSPASVFRTPTSGQSVSTCSSKNTSKTK 184
S K K P S SK++SK K
Sbjct: 128 SKKKTKFSK---EEPVSSGPEEAAGSKSSSKKK 157
>gi|169205573 PREDICTED: similar to Nucleolar protein 5A [Homo
sapiens]
Length = 166
Score = 30.0 bits (66), Expect = 1.6
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 29/153 (18%)
Query: 32 SHDDKSTFEETCPYCFQLLVLDNSRVRLKPKARLTPKIQKLLNREARNYTLSFKEAKMVK 91
+H D S+ E C + KPK + K Q++ + + ++SF + K K
Sbjct: 34 NHPDSSSTPERCEETSE-----------KPKKKKKQKPQEVPQEKTEDPSISFSKPKKKK 82
Query: 92 KFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDM 151
F SK L+ + ++ S S + KS+P T T + PE N +
Sbjct: 83 SF--SKEELM------SSDLEETAGSTSLLKRKKSSPKTET----VNDPEEA---GNRSV 127
Query: 152 SGSKGKSPASVFRTPTSGQSVSTCSSKNTSKTK 184
S K K P S SK++SK K
Sbjct: 128 SKKKTKFSK---EEPVSSGPEEAAGSKSSSKKK 157
>gi|169203848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 30.0 bits (66), Expect = 1.6
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 29/153 (18%)
Query: 32 SHDDKSTFEETCPYCFQLLVLDNSRVRLKPKARLTPKIQKLLNREARNYTLSFKEAKMVK 91
+H D S+ E C + KPK + K Q++ + + ++SF + K K
Sbjct: 34 NHPDSSSTPERCEETSE-----------KPKKKKKQKPQEVPQEKTEDPSISFSKPKKKK 82
Query: 92 KFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDM 151
F SK L+ + ++ S S + KS+P T T + PE N +
Sbjct: 83 SF--SKEELM------SSDLEETAGSTSLLKRKKSSPKTET----VNDPEEA---GNRSV 127
Query: 152 SGSKGKSPASVFRTPTSGQSVSTCSSKNTSKTK 184
S K K P S SK++SK K
Sbjct: 128 SKKKTKFSK---EEPVSSGPEEAAGSKSSSKKK 157
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 30.0 bits (66), Expect = 1.6
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 101 LITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPA 160
L+ C CN+ VK ++F S + ++ +SK L P + +S SKG S +
Sbjct: 147 LVVCNDCNQVVK----PQAFQSHYERRHSS-SSKPPLAVPPTSVFSFFPSLSKSKGGSAS 201
Query: 161 SVFRTPTSGQSVSTCSSKNTSKTKKHFSQLK 191
R+ + G ++ SS K+ K QL+
Sbjct: 202 GSNRSSSGGVLSASSSSSKLLKSPKEKLQLR 232
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 30.0 bits (66), Expect = 1.6
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 101 LITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPA 160
L+ C CN+ VK ++F S + ++ +SK L P + +S SKG S +
Sbjct: 147 LVVCNDCNQVVK----PQAFQSHYERRHSS-SSKPPLAVPPTSVFSFFPSLSKSKGGSAS 201
Query: 161 SVFRTPTSGQSVSTCSSKNTSKTKKHFSQLK 191
R+ + G ++ SS K+ K QL+
Sbjct: 202 GSNRSSSGGVLSASSSSSKLLKSPKEKLQLR 232
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 29.6 bits (65), Expect = 2.1
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 121 VSTLKSNPATPTSKLSLKTPERRTANP---------NHDMSGSKGKSPASVFRTPTSGQS 171
V LK+NPATP++ + P P N GS S TP SGQ
Sbjct: 1125 VQELKNNPATPSTAMGSSVPYSTAKTPHPVLTPVAANQAKQGSLINSLKPSGPTPASGQL 1184
Query: 172 VSTCSSKNTSK 182
S + T+K
Sbjct: 1185 SSGDKASGTAK 1195
>gi|102468717 mediator complex subunit 13 [Homo sapiens]
Length = 2174
Score = 29.6 bits (65), Expect = 2.1
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 98 SVLLITCKTCNRTVKHHGKSRSFVSTLKSNP--ATPTSKLSLKTPERRTANPNHDMSGSK 155
S L + + C + + S S+L S P PTS+ SL TP + T N + +
Sbjct: 1447 SKLKLYAQVCRYDLGPYLASLPLDSSLLSQPNLVAPTSQ-SLITPPQMTNTGNANTPSAT 1505
Query: 156 GKSPASVFRTPTSGQSVSTC-----SSKNTSKTKKHFSQLKMLLSQNESQKIP 203
S AS T TSG ++ST S+ T+ T S L S S K+P
Sbjct: 1506 LASAASSTMTVTSGVAISTSVATANSTLTTASTSS--SSSSNLNSGVSSNKLP 1556
>gi|122937341 hypothetical protein LOC388960 [Homo sapiens]
Length = 922
Score = 29.6 bits (65), Expect = 2.1
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 122 STLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKNTS 181
+T + PATP +S K + +ANP S S ++T S+CSS
Sbjct: 774 NTSLTGPATPAQPISAKATQPSSANPTQPTVPQSAASRPSAYKT-------SSCSSLQRE 826
Query: 182 KTKKHFSQLKML 193
+ L+ L
Sbjct: 827 PVSTAVTSLRSL 838
Score = 28.9 bits (63), Expect = 3.6
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 86 EAKMVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNP--ATPTSKLSLKTPERR 143
E+ KK KD+ ++ + + + +K H S P P +K+ K PE
Sbjct: 467 ESPSAKKAKDTSAIKVNQVQEKSCVIKGHSDQVRKNKHKASEPIQGAPKAKIQPKNPECL 526
Query: 144 --------TANPNHDMSGSKGKSPAS---------VFRTPTSGQSVSTCSSKNTSKTKKH 186
+A ++ S +K K ++ + +T + GQ + + KN+SK +
Sbjct: 527 LEREVVVGSATVSNSASVNKAKHSSNKPHKAASSRISKTKSHGQEKTKGNRKNSSKKSEE 586
Query: 187 FSQLKMLLSQNESQKIPKV 205
Q + E Q IP +
Sbjct: 587 SKQSGKKVKVEEKQTIPNM 605
>gi|150170718 zinc finger protein 292 [Homo sapiens]
Length = 2723
Score = 29.6 bits (65), Expect = 2.1
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 119 SFVSTLKSNPATPTSKLSLKTPERRTANPNHDMSG------SKGKSPASVFRTPTSGQSV 172
S + S P PT+ L LKT E + + SG + S SV P + +S
Sbjct: 1559 SSIEECSSLPVFPTNDLLLKTVENGLCSSSFPNSGGPSQNFTSNSSRVSVISGPQNTRS- 1617
Query: 173 STCSSKNTSKTKKHFSQLKMLLSQNESQKIPKVD 206
S + K S +K+ L++ N SQ + D
Sbjct: 1618 SHLNKKGNSASKRRKKVAPPLIAPNASQNLVTSD 1651
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 2.8
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 120 FVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKN 179
F S + ++ T+ LSL TP P G K+P + T T+ + +T ++
Sbjct: 222 FASIATAPTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATT 281
Query: 180 TSKT 183
TS +
Sbjct: 282 TSSS 285
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 2.8
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 120 FVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKSPASVFRTPTSGQSVSTCSSKN 179
F S + ++ T+ LSL TP P G K+P + T T+ + +T ++
Sbjct: 222 FASIATAPTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATT 281
Query: 180 TSKT 183
TS +
Sbjct: 282 TSSS 285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.126 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,157,468
Number of Sequences: 37866
Number of extensions: 331682
Number of successful extensions: 1672
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1642
Number of HSP's gapped (non-prelim): 89
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.