Search of human proteins with 6912616

Search of human proteins with 6912616

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6912616 H2A histone family, member V isoform 1 [Homo
sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]      249   5e-67
gi|4504255 H2A histone family, member Z [Homo sapiens]                244   1e-65
gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]     209   6e-55
gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]     199   6e-52
gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens]     155   6e-39
gi|24638446 histone cluster 2, H2ac [Homo sapiens]                    140   2e-34
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]                  140   4e-34
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]                    140   4e-34
gi|15617199 histone cluster 3, H2a [Homo sapiens]                     139   5e-34
gi|10800130 histone cluster 1, H2ad [Homo sapiens]                    139   5e-34
gi|29553970 H2A histone family, member J [Homo sapiens]               139   6e-34
gi|10800132 histone cluster 1, H2ag [Homo sapiens]                    138   1e-33
gi|4504239 histone cluster 1, H2ai [Homo sapiens]                     138   1e-33
gi|18105045 histone cluster 1, H2ah [Homo sapiens]                    138   1e-33
gi|4504241 histone cluster 1, H2ak [Homo sapiens]                     138   1e-33
gi|4504245 histone cluster 1, H2ac [Homo sapiens]                     138   1e-33
gi|19557656 histone cluster 1, H2ab [Homo sapiens]                    138   1e-33
gi|10645195 histone cluster 1, H2ae [Homo sapiens]                    138   1e-33
gi|4504249 histone cluster 1, H2am [Homo sapiens]                     138   1e-33
gi|4504243 histone cluster 1, H2al [Homo sapiens]                     138   1e-33
gi|10800144 histone cluster 1, H2aj [Homo sapiens]                    138   1e-33
gi|25092737 histone cluster 1, H2aa [Homo sapiens]                    137   3e-33
gi|28195394 histone cluster 2, H2ab [Homo sapiens]                    136   4e-33
gi|4504253 H2A histone family, member X [Homo sapiens]                135   7e-33
gi|41406069 H2A histone family, member V isoform 4 [Homo sapiens]     130   3e-31
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]      121   2e-28
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]     121   2e-28
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]     121   2e-28
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]     121   2e-28
gi|8923920 H2A histone family, member Y2 [Homo sapiens]               120   2e-28

>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
          Length = 128

 Score =  249 bits (635), Expect = 5e-67
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
           MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE
Sbjct: 1   MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60

Query: 61  YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 120
           YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
Sbjct: 61  YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 120

Query: 121 KKGQQKTA 128
           KKGQQKTA
Sbjct: 121 KKGQQKTA 128


>gi|4504255 H2A histone family, member Z [Homo sapiens]
          Length = 128

 Score =  244 bits (623), Expect = 1e-65
 Identities = 125/127 (98%), Positives = 126/127 (99%)

Query: 1   MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
           MAGGKAGKDSGKAK KAVSRSQRAGLQFPVGRIHRHLK+RTTSHGRVGATAAVYSAAILE
Sbjct: 1   MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE 60

Query: 61  YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 120
           YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
Sbjct: 61  YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 120

Query: 121 KKGQQKT 127
           KKGQQKT
Sbjct: 121 KKGQQKT 127


>gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]
          Length = 114

 Score =  209 bits (531), Expect = 6e-55
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
           MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE
Sbjct: 1   MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60

Query: 61  YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 108
           YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG
Sbjct: 61  YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 108


>gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]
          Length = 102

 Score =  199 bits (505), Expect = 6e-52
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 28  FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 87
           FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61

Query: 88  QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA 128
           QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA
Sbjct: 62  QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA 102


>gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens]
          Length = 90

 Score =  155 bits (393), Expect = 6e-39
 Identities = 90/128 (70%), Positives = 90/128 (70%), Gaps = 38/128 (29%)

Query: 1   MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
           MAGGKAGKDSGKAKAKAVSRSQRAGLQ                                 
Sbjct: 1   MAGGKAGKDSGKAKAKAVSRSQRAGLQ--------------------------------- 27

Query: 61  YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 120
                VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
Sbjct: 28  -----VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 82

Query: 121 KKGQQKTA 128
           KKGQQKTA
Sbjct: 83  KKGQQKTA 90


>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
          Length = 129

 Score =  140 bits (354), Expect = 2e-34
 Identities = 78/123 (63%), Positives = 92/123 (74%), Gaps = 2/123 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQQ 125
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK + 
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTES 123

Query: 126 KTA 128
             A
Sbjct: 124 HKA 126


>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
          Length = 130

 Score =  140 bits (352), Expect = 4e-34
 Identities = 77/117 (65%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
          Length = 130

 Score =  140 bits (352), Expect = 4e-34
 Identities = 77/117 (65%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|15617199 histone cluster 3, H2a [Homo sapiens]
          Length = 130

 Score =  139 bits (351), Expect = 5e-34
 Identities = 77/117 (65%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA SRS RAGLQFPVGR+HR L+    S  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120


>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
          Length = 130

 Score =  139 bits (351), Expect = 5e-34
 Identities = 77/117 (65%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    S  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|29553970 H2A histone family, member J [Homo sapiens]
          Length = 129

 Score =  139 bits (350), Expect = 6e-34
 Identities = 79/123 (64%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GK +AKA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQ- 124
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK + 
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTES 123

Query: 125 QKT 127
           QKT
Sbjct: 124 QKT 126


>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
          Length = 130

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
          Length = 130

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
          Length = 128

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
          Length = 130

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
          Length = 130

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120


>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
          Length = 130

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    S  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120


>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
          Length = 130

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    S  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120


>gi|4504249 histone cluster 1, H2am [Homo sapiens]
          Length = 130

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504243 histone cluster 1, H2al [Homo sapiens]
          Length = 130

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
          Length = 128

 Score =  138 bits (348), Expect = 1e-33
 Identities = 76/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA +RS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
          Length = 131

 Score =  137 bits (344), Expect = 3e-33
 Identities = 76/117 (64%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AK+ SRS RAGLQFPVGRIHR L+    +  R+GA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAE-RIGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNAS+D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
          Length = 130

 Score =  136 bits (343), Expect = 4e-33
 Identities = 75/117 (64%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLA+R DEEL+ L+   TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>gi|4504253 H2A histone family, member X [Homo sapiens]
          Length = 143

 Score =  135 bits (341), Expect = 7e-33
 Identities = 76/117 (64%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
           GK  GKA+AKA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 5   GKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAE-RVGAGAPVYLAAVLEYLTAEI 63

Query: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I   L+ KK
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>gi|41406069 H2A histone family, member V isoform 4 [Homo sapiens]
          Length = 66

 Score =  130 bits (327), Expect = 3e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)

Query: 1  MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
          MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE
Sbjct: 1  MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60

Query: 61 YLTAEV 66
          YLTAEV
Sbjct: 61 YLTAEV 66


>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score =  121 bits (303), Expect = 2e-28
 Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 11  GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
           GK K+   SRS +AG+ FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELA
Sbjct: 6   GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64

Query: 71  GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126
           GNA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 65  GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score =  121 bits (303), Expect = 2e-28
 Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 11  GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
           GK K+   SRS +AG+ FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELA
Sbjct: 6   GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64

Query: 71  GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126
           GNA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 65  GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
          Length = 372

 Score =  121 bits (303), Expect = 2e-28
 Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 11  GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
           GK K+   SRS +AG+ FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELA
Sbjct: 6   GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64

Query: 71  GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126
           GNA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 65  GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
          Length = 369

 Score =  121 bits (303), Expect = 2e-28
 Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 11  GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
           GK K+   SRS +AG+ FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELA
Sbjct: 6   GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64

Query: 71  GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126
           GNA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 65  GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
          Length = 372

 Score =  120 bits (302), Expect = 2e-28
 Identities = 64/114 (56%), Positives = 81/114 (71%), Gaps = 2/114 (1%)

Query: 10  SGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLEL 69
           SGK K   +SRS RAG+ FPVGR+ R+LK  T  + R+   A VY AA++EYL AE+LEL
Sbjct: 5   SGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEILEL 63

Query: 70  AGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
           AGNA++D K  RI PRH+ LA+  DEEL+ L+K  TIA GGV+P IH  L+ KK
Sbjct: 64  AGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKK 117


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,245,955
Number of Sequences: 37866
Number of extensions: 146110
Number of successful extensions: 495
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 48
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.