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Search of human proteins with 66346683
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66346683 SERPINE1 mRNA binding protein 1 isoform 3 [Homo
sapiens]
(393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66346683 SERPINE1 mRNA binding protein 1 isoform 3 [Homo sapi... 810 0.0
gi|66346679 SERPINE1 mRNA binding protein 1 isoform 1 [Homo sapi... 800 0.0
gi|66346685 SERPINE1 mRNA binding protein 1 isoform 4 [Homo sapi... 791 0.0
gi|66346681 SERPINE1 mRNA binding protein 1 isoform 2 [Homo sapi... 781 0.0
gi|157676331 hyaluronan binding protein 4 [Homo sapiens] 253 2e-67
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 50 4e-06
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 46 5e-05
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 46 5e-05
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 44 2e-04
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 44 3e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 43 6e-04
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 41 0.002
gi|113415490 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 41 0.002
gi|113415488 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 41 0.002
gi|113415486 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 41 0.002
gi|113415484 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 41 0.002
gi|113415482 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17... 41 0.002
gi|113415480 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 41 0.002
gi|113415478 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 41 0.002
gi|113415476 PREDICTED: similar to deubiquitinating enzyme 3 [Ho... 41 0.002
gi|239742297 PREDICTED: hypothetical protein XP_002342480 [Homo ... 41 0.002
gi|239742295 PREDICTED: hypothetical protein XP_002342479 [Homo ... 41 0.002
gi|239742293 PREDICTED: hypothetical protein XP_002342478 [Homo ... 41 0.002
gi|239742291 PREDICTED: hypothetical protein XP_002342477 [Homo ... 41 0.002
gi|239742289 PREDICTED: hypothetical protein XP_002342476 [Homo ... 41 0.002
gi|239742287 PREDICTED: hypothetical protein XP_002342475 [Homo ... 41 0.002
gi|239742285 PREDICTED: hypothetical protein XP_002342486 [Homo ... 41 0.002
gi|239742282 PREDICTED: hypothetical protein XP_002342474 [Homo ... 41 0.002
gi|239742280 PREDICTED: hypothetical protein XP_002342473 [Homo ... 41 0.002
gi|239742278 PREDICTED: hypothetical protein XP_002342472 [Homo ... 41 0.002
>gi|66346683 SERPINE1 mRNA binding protein 1 isoform 3 [Homo
sapiens]
Length = 393
Score = 810 bits (2093), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT 240
RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT 240
Query: 241 EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA 300
EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA
Sbjct: 241 EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA 300
Query: 301 DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG 360
DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG
Sbjct: 301 DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG 360
Query: 361 RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 393
RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
Sbjct: 361 RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 393
>gi|66346679 SERPINE1 mRNA binding protein 1 isoform 1 [Homo
sapiens]
Length = 408
Score = 800 bits (2067), Expect = 0.0
Identities = 393/408 (96%), Positives = 393/408 (96%), Gaps = 15/408 (3%)
Query: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT-------- 232
RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
Query: 233 -------DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 285
DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
Sbjct: 241 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 300
Query: 286 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 345
RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
Sbjct: 301 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 360
Query: 346 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 393
DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
Sbjct: 361 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 408
>gi|66346685 SERPINE1 mRNA binding protein 1 isoform 4 [Homo
sapiens]
Length = 387
Score = 791 bits (2043), Expect = 0.0
Identities = 387/393 (98%), Positives = 387/393 (98%), Gaps = 6/393 (1%)
Query: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT 240
RGDGFDSRGKREFDRHSGSDR SGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDR------SGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVT 234
Query: 241 EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA 300
EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA
Sbjct: 235 EETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA 294
Query: 301 DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG 360
DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG
Sbjct: 295 DGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGG 354
Query: 361 RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 393
RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
Sbjct: 355 RGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 387
>gi|66346681 SERPINE1 mRNA binding protein 1 isoform 2 [Homo
sapiens]
Length = 402
Score = 781 bits (2017), Expect = 0.0
Identities = 387/408 (94%), Positives = 387/408 (94%), Gaps = 21/408 (5%)
Query: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT-------- 232
RGDGFDSRGKREFDRHSGSDR SGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDR------SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 234
Query: 233 -------DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 285
DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
Sbjct: 235 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 294
Query: 286 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 345
RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
Sbjct: 295 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 354
Query: 346 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 393
DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
Sbjct: 355 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 402
>gi|157676331 hyaluronan binding protein 4 [Homo sapiens]
Length = 413
Score = 253 bits (647), Expect = 2e-67
Identities = 178/418 (42%), Positives = 229/418 (54%), Gaps = 49/418 (11%)
Query: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKE----------AGGGGVGGPGAKSA 54
+QE FGCVV NRF QL DDESDPF++L+ AE ++++ A G G G +S
Sbjct: 16 MQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDEAAAAAGAGPRGGRSP 75
Query: 55 AQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPD 114
A A+ + AG R+ESQK+RK+ LP V + P L+ G +R RR +
Sbjct: 76 AGASG----HRAGAGGRRESQKERKS-LPAPVA----QRPDSPGGGLQAPGQKRTPRRGE 126
Query: 115 QQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGG--------EFSVDRPIIDRPIRGRG 166
QQ + + + ER R R +P E + + E DR DRP+RGRG
Sbjct: 127 QQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEKPGDRFDRDRPLRGRG 186
Query: 167 GLGRGRGGRGRGMGRG----DGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSH 222
G G GRGRG G G D FD RGKREF+R+ G+D+ + ++ ED GG G
Sbjct: 187 GPRGGMRGRGRG-GPGNRVFDAFDQRGKREFERYGGNDKIA------VRTEDNMGGCGVR 239
Query: 223 NWGTVKDELTDLDQSNVTEETPEGEEHHPVADTEN--KENEVEEVKEEGPKEMTLDEWKA 280
WG+ KD +D++ + EE EE + E+ K E+E +E +EMTLDEWK
Sbjct: 240 TWGSGKDT-SDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVEEETQVQEMTLDEWKN 298
Query: 281 IQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD--HHFRKPANDITS 338
+Q + R K EFNIRKP K V+HKSK + +D D H FRKPANDITS
Sbjct: 299 LQEQTRPKPEFNIRKPESTVPS---KAVVIHKSKYRDDMVKDDYEDDSHVFRKPANDITS 355
Query: 339 QLEINFGDLGRPGRGGRGG-RGGRGRGGR-PNRGSRTDKSSAS-APDVDDPEAFPALA 393
QLEINFG+L RPGRG RGG RGGRGR R N G R + AP+ DDPE FPAL+
Sbjct: 356 QLEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPNPDDPEDFPALS 413
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 50.1 bits (118), Expect = 4e-06
Identities = 65/234 (27%), Positives = 93/234 (39%), Gaps = 42/234 (17%)
Query: 143 EEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDG-FDSRGKREF----DRHS 197
++ G GG + DR RGRGG G G GG G G R G ++ RG+
Sbjct: 198 DQSGGGGSGGYGQQ--DRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMG 255
Query: 198 GSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHHPVADTEN 257
GSDR F+ + G + + R S N + L + NVT E+ VAD
Sbjct: 256 GSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGE-NVTIES--------VADYFK 306
Query: 258 KENEVEEVKEEGPKEMTL-DEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSE 316
+ ++ K+ G + L + + + K A V F+ P+ A W G + +
Sbjct: 307 QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD-DPPSAKAAIDWFDGKEFSGNPIK 365
Query: 317 EAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRG 370
+ A T + + N RGG GRGGRGRGG RG
Sbjct: 366 VSFA----------------TRRADFN--------RGGGNGRGGRGRGGPMGRG 395
Score = 33.5 bits (75), Expect = 0.34
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 351 GRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPE 387
GRGGRGG GG RGG G D+ S + D+ +
Sbjct: 247 GRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSD 283
Score = 30.4 bits (67), Expect = 2.9
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 29/156 (18%)
Query: 42 GGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGV-VDKKEETQPPVA 100
G GG GG G+ + + G Q R D K P P + + E A
Sbjct: 393 GRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAG---DWKCPNPTCENMNFSWRNECNQCKA 449
Query: 101 LKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDR 160
K +G G P G DRR R + +G GG+
Sbjct: 450 PKPDG---PGGGPGGSHMGGNYGDDRRGGRGGYDRGGY------RGRGGD---------- 490
Query: 161 PIRGRGGLGRGRGGRGRGMGRGDG-FDSRGKREFDR 195
RGG GRGG RG G G G DSRG+ DR
Sbjct: 491 ----RGGFRGGRGGGDRG-GFGPGKMDSRGEHRQDR 521
Score = 29.6 bits (65), Expect = 4.9
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 343 NFGDLGRPGRGGRGGRGGRGRGG 365
N+GD R GRGG G RGRGG
Sbjct: 467 NYGDDRRGGRGGYDRGGYRGRGG 489
Score = 29.3 bits (64), Expect = 6.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 344 FGDLGRPGRGGRGGRGGRGRGGRPNRGS 371
+G+ + G GG GG G + RGGR GS
Sbjct: 194 YGNQDQSGGGGSGGYGQQDRGGRGRGGS 221
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 46.2 bits (108), Expect = 5e-05
Identities = 61/218 (27%), Positives = 86/218 (39%), Gaps = 33/218 (15%)
Query: 160 RPIRGRGGLGRGRGG-RGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGG 218
R + G RG GG +G G GRG G+D G+ SG DR F ++ G H D
Sbjct: 162 RDVSRYGEDNRGYGGSQGGGRGRG-GYDKDGRGPMTGSSGGDRGGFKNFGG--HRD---- 214
Query: 219 SGSHNWGTVKDELTDLDQSN----VTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMT 274
+G D ++ D S+ + EG V + + ++ K+ G +
Sbjct: 215 -----YGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMIN 269
Query: 275 LDEWKAI-QNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPA 333
L K + K A V F+ P+ A W G +E H + R+P
Sbjct: 270 LYTDKDTGKPKGEATVSFD-DPPSAKAAIDWFDG--------KEFHGNIIKVSFATRRP- 319
Query: 334 NDITSQLEINFGDLGRPGRGGRGGRGG-RGRGGRPNRG 370
+ GR GRGG GRGG +GRGG P G
Sbjct: 320 ----EFMRGGGSGGGRRGRGGYRGRGGFQGRGGDPKSG 353
Score = 34.7 bits (78), Expect = 0.15
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 140 KPLEEKGEGGEFSVDRPIIDRPIRGRGGLG----RGRGGRGRGMGRGDGFDSRGKREFDR 195
+P + + GG+F RGRG G RGRGGRG G G S G DR
Sbjct: 380 RPEDSRPSGGDF-----------RGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDR 428
Query: 196 HSGSDRSSFSHYSGLKHEDKRGGSGSHNWG 225
SG S G + GG G G
Sbjct: 429 SSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 458
Score = 33.5 bits (75), Expect = 0.34
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 144 EKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGF--DSRGKREFDRHS--GS 199
++ GG +S DR GG G R G G G RG G+ D G DR G
Sbjct: 427 DRSSGGGYSGDR--------SGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGG 478
Query: 200 DRSSFSHYSGLKHEDKRGGSGSHNWG 225
DR + G + RGG G G
Sbjct: 479 DRGGYGGDRGGGYGGDRGGYGGDRGG 504
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 165 RGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNW 224
RGG G RGG G G G SRG G DR S Y G D+ GG G
Sbjct: 502 RGGYGGDRGGYGGDRGGYGGDRSRG------GYGGDRGGGSGYGG----DRSGGYGGDRS 551
Query: 225 G 225
G
Sbjct: 552 G 552
Score = 30.8 bits (68), Expect = 2.2
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 345 GDLGRPGRGGRGG-RGGRGRGGRPNRGSRTDKSS 377
G+ G GRGGRGG RGG G G R G D+SS
Sbjct: 398 GERGYRGRGGRGGDRGGYG-GDRSGGGYGGDRSS 430
Score = 29.6 bits (65), Expect = 4.9
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 311 HKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRG-GRGG------------ 357
+ + H++ HH + D++ E N G G G G GRGG
Sbjct: 139 YSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGS 198
Query: 358 ----RGG-RGRGGRPNRGSRTDKSSAS 379
RGG + GG + G RTD S S
Sbjct: 199 SGGDRGGFKNFGGHRDYGPRTDADSES 225
Score = 28.9 bits (63), Expect = 8.4
Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 15/65 (23%)
Query: 165 RGGLG--RGRGGRG--RGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSG 220
RGG G R RGG G RG G G G D G DR G Y G D+ GG G
Sbjct: 516 RGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGG-------YGG----DRGGGYG 564
Query: 221 SHNWG 225
G
Sbjct: 565 GDRGG 569
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 46.2 bits (108), Expect = 5e-05
Identities = 61/218 (27%), Positives = 86/218 (39%), Gaps = 33/218 (15%)
Query: 160 RPIRGRGGLGRGRGG-RGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGG 218
R + G RG GG +G G GRG G+D G+ SG DR F ++ G H D
Sbjct: 165 RDVSRYGEDNRGYGGSQGGGRGRG-GYDKDGRGPMTGSSGGDRGGFKNFGG--HRD---- 217
Query: 219 SGSHNWGTVKDELTDLDQSN----VTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMT 274
+G D ++ D S+ + EG V + + ++ K+ G +
Sbjct: 218 -----YGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMIN 272
Query: 275 LDEWKAI-QNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPA 333
L K + K A V F+ P+ A W G +E H + R+P
Sbjct: 273 LYTDKDTGKPKGEATVSFD-DPPSAKAAIDWFDG--------KEFHGNIIKVSFATRRP- 322
Query: 334 NDITSQLEINFGDLGRPGRGGRGGRGG-RGRGGRPNRG 370
+ GR GRGG GRGG +GRGG P G
Sbjct: 323 ----EFMRGGGSGGGRRGRGGYRGRGGFQGRGGDPKSG 356
Score = 34.7 bits (78), Expect = 0.15
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 140 KPLEEKGEGGEFSVDRPIIDRPIRGRGGLG----RGRGGRGRGMGRGDGFDSRGKREFDR 195
+P + + GG+F RGRG G RGRGGRG G G S G DR
Sbjct: 383 RPEDSRPSGGDF-----------RGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDR 431
Query: 196 HSGSDRSSFSHYSGLKHEDKRGGSGSHNWG 225
SG S G + GG G G
Sbjct: 432 SSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 461
Score = 33.5 bits (75), Expect = 0.34
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 144 EKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGF--DSRGKREFDRHS--GS 199
++ GG +S DR GG G R G G G RG G+ D G DR G
Sbjct: 430 DRSSGGGYSGDR--------SGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGG 481
Query: 200 DRSSFSHYSGLKHEDKRGGSGSHNWG 225
DR + G + RGG G G
Sbjct: 482 DRGGYGGDRGGGYGGDRGGYGGDRGG 507
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 165 RGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNW 224
RGG G RGG G G G SRG G DR S Y G D+ GG G
Sbjct: 505 RGGYGGDRGGYGGDRGGYGGDRSRG------GYGGDRGGGSGYGG----DRSGGYGGDRS 554
Query: 225 G 225
G
Sbjct: 555 G 555
Score = 30.8 bits (68), Expect = 2.2
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 345 GDLGRPGRGGRGG-RGGRGRGGRPNRGSRTDKSS 377
G+ G GRGGRGG RGG G G R G D+SS
Sbjct: 401 GERGYRGRGGRGGDRGGYG-GDRSGGGYGGDRSS 433
Score = 29.6 bits (65), Expect = 4.9
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 311 HKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRG-GRGG------------ 357
+ + H++ HH + D++ E N G G G G GRGG
Sbjct: 142 YSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGS 201
Query: 358 ----RGG-RGRGGRPNRGSRTDKSSAS 379
RGG + GG + G RTD S S
Sbjct: 202 SGGDRGGFKNFGGHRDYGPRTDADSES 228
Score = 28.9 bits (63), Expect = 8.4
Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 15/65 (23%)
Query: 165 RGGLG--RGRGGRG--RGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSG 220
RGG G R RGG G RG G G G D G DR G Y G D+ GG G
Sbjct: 519 RGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGG-------YGG----DRGGGYG 567
Query: 221 SHNWG 225
G
Sbjct: 568 GDRGG 572
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 44.3 bits (103), Expect = 2e-04
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 12/179 (6%)
Query: 42 GGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVAL 101
G G G K +A++ + N G+ K+ K++ + G + ++
Sbjct: 1562 GDGREPRTGIKRKLLSASEEDENMGGEDKEKKETKEKSHLSTSESGELGSSLSSESTCGS 1621
Query: 102 KKEGIRRVGRRPDQQLQGE---GKIIDRRPERRPPRER-RFEKPLEEKGEGGEFSVDR-P 156
+ R + G+ K I RP+R+ ++ ++ + +G GG R
Sbjct: 1622 DSDS-ESTSRTDQDYVDGDHDYSKFIQTRPKRKLRKQHGNGKRNWKTRGTGGRGRWGRWG 1680
Query: 157 IIDRPIRGRGGLG---RGRGG---RGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSG 209
R RGRGG G RGRGG RGRG GRG SRG R +D + +SG
Sbjct: 1681 RWSRGGRGRGGRGRGSRGRGGGGTRGRGRGRGGRGASRGATRAKRARIADDEFDTMFSG 1739
Score = 37.7 bits (86), Expect = 0.018
Identities = 20/28 (71%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 345 GDLGRPGRGGRGGRGGRGRGGRPNRGSR 372
G GR GR GR RGGRGRGGR RGSR
Sbjct: 1671 GGRGRWGRWGRWSRGGRGRGGR-GRGSR 1697
Score = 33.5 bits (75), Expect = 0.34
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 344 FGDLGRPGRGGRGGRGGRGRGGRPNRGSRT 373
+G GR RGGRG RGGRGRG R G T
Sbjct: 1676 WGRWGRWSRGGRG-RGGRGRGSRGRGGGGT 1704
Score = 30.8 bits (68), Expect = 2.2
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 345 GDLGRPGRGGRGGRGGRGRG-GRPNRGSRTDKSSASAPDVDDPE 387
G GR R GRGG G RGRG GR RG+ + A + D E
Sbjct: 1690 GGRGRGSR-GRGGGGTRGRGRGRGGRGASRGATRAKRARIADDE 1732
Score = 28.9 bits (63), Expect = 8.4
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 348 GRPGRGGRG--GRGGRGRGGR-PNRGSRTDKSSASAPDVDD 385
G GRGG G GR GRGRGGR +RG+ K + A D D
Sbjct: 1695 GSRGRGGGGTRGR-GRGRGGRGASRGATRAKRARIADDEFD 1734
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 43.9 bits (102), Expect = 3e-04
Identities = 69/328 (21%), Positives = 119/328 (36%), Gaps = 38/328 (11%)
Query: 22 DDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNP 81
++E D E + K+E G V G K + + AGK+ + E + D+
Sbjct: 740 EEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGE---RKKEERAGKEEKGEEEGDQGE- 795
Query: 82 LPPSVGVVDKKEETQPPVALKKEG--------IRRVGRRPDQQLQGEGKIIDRRPERRPP 133
++EET+ K+EG G R +++ +GEG+ + E
Sbjct: 796 --------GEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEG 847
Query: 134 R--ERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRG------------GRGRGM 179
E E EE+GE GE + + G G G G G
Sbjct: 848 EGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEE 907
Query: 180 GRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNV 239
G G+G + G+ + + G + G G G + E + +
Sbjct: 908 GEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGE 967
Query: 240 TEETPEGEEHHPVADTE--NKENEVEEVKEEGPKEMTLDE--WKAIQNKDRAKVEFNIRK 295
E EGEE + E E E EE +EEG +E +E + ++ +VE +
Sbjct: 968 EEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEG 1027
Query: 296 PNEGADGQWKKGFVLHKSKSEEAHAEDS 323
+G+ ++G + + +E E++
Sbjct: 1028 EEGEGEGEEEEGEEEGEEREKEGEGEEN 1055
Score = 43.1 bits (100), Expect = 4e-04
Identities = 50/187 (26%), Positives = 74/187 (39%), Gaps = 16/187 (8%)
Query: 110 GRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLG 169
G ++ +GEGK + E E E+ E +GE GE + + G G
Sbjct: 908 GEGEGEEEEGEGKGEEEGEEGEGEGE---EEEGEGEGEDGEGEGEEE--EGEWEGEEEEG 962
Query: 170 RGRG---GRGRGM-GRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWG 225
G G G G G G G+G + G+ E + G + G E+ G G
Sbjct: 963 EGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGE---EEGEGEEEGEGEGEEEEEG 1019
Query: 226 TVKDELTDLDQSNVTEETP---EGEEHHPVAD-TENKENEVEEVKEEGPKEMTLDEWKAI 281
V+ E+ + EE EGEE + EN+ N EE +EEG + T +E
Sbjct: 1020 EVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEGKYQETGEEENER 1079
Query: 282 QNKDRAK 288
Q+ + K
Sbjct: 1080 QDGEEYK 1086
Score = 42.7 bits (99), Expect = 6e-04
Identities = 66/290 (22%), Positives = 105/290 (36%), Gaps = 24/290 (8%)
Query: 35 ENKKKEAGGGGVG------GPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGV 88
E K +E G G G G G + + GK R+E +++ + G
Sbjct: 784 EEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGE 843
Query: 89 VDKKE--ETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKG 146
++ E E + ++EG G ++ +GEG+ + E E E EE+G
Sbjct: 844 EEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGE---EEEG 900
Query: 147 EG-----GEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDR 201
EG GE + + G G G G G G G+ + G+ E G +
Sbjct: 901 EGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEE 960
Query: 202 SSFSH--YSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHHPVADTENKE 259
G ++ G G G + E + ++ EE EGEE E +E
Sbjct: 961 EGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEG--EEEGEGEEEGEGEGEEEEE 1018
Query: 260 NEVEE----VKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWK 305
EVE + EG E E + + + + E N R E + + K
Sbjct: 1019 GEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEGK 1068
Score = 37.0 bits (84), Expect = 0.031
Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 17/237 (7%)
Query: 135 ERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFD 194
E R + EE G E D R +G +GRG R G G+ + K E+
Sbjct: 652 EGRGDGTCEEGSSGAEHWQDEE------REKGEKDKGRGEMERP-GEGEK-ELAEKEEWK 703
Query: 195 RHSGSDRSSFS----HYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHH 250
+ G ++ H E + GG H G ++ + ++ E EGE
Sbjct: 704 KRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEE 763
Query: 251 PVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGAD---GQWKKG 307
+ E +E E ++ + G +E +E + ++ + E + EG + G+ ++G
Sbjct: 764 VEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEE-ETEGRGEEKEEGGEVEGGEVEEG 822
Query: 308 FVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRG 364
+ + EE E+ + + + + E + G G G G G G G
Sbjct: 823 KGEREEEEEEGEGEEEEGEGEEEEGEGE-EEEGEGKGEEEGEEGEGEEEGEEGEGEG 878
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 42.7 bits (99), Expect = 6e-04
Identities = 53/206 (25%), Positives = 76/206 (36%), Gaps = 35/206 (16%)
Query: 35 ENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQL--------RKESQKDRKNPLPPSV 86
+N + GG G K+ AAA T G+Q RK+ ++ K P
Sbjct: 314 QNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKA 373
Query: 87 GVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKG 146
K K+G+R RR G+G+ ++P + PR RR +K K
Sbjct: 374 SAAGAKSRGGGD----KKGLREAKRR------GDGR---KKPRWQNPR-RRAQKAPAAKP 419
Query: 147 EGGEFSVDRPIIDRPIRGRGGLGRGRGGR--------GRGMGRGDGFDSRGKREFDRHSG 198
GG R + + RGG R GG+ R G +SRG ++ R
Sbjct: 420 RGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKA 479
Query: 199 SDRSSFSHYSGLKHEDKRGGSGSHNW 224
S + S GLK SG + W
Sbjct: 480 SAAGTKSRGGGLKSH-----SGKNLW 500
Score = 38.1 bits (87), Expect = 0.014
Identities = 49/208 (23%), Positives = 71/208 (34%), Gaps = 44/208 (21%)
Query: 43 GGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQ-----KDRKNPL--------------- 82
GGG PG + AA ++ S GK+ ++ K RK P
Sbjct: 589 GGGDKQPGWQKAAAGVTKSRSGDGGKKAWRQKAAGTGAKSRKKPWRRGQKDAAAAEKAWA 648
Query: 83 --PPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEK 140
S G K+ Q P A E + R+ PR RR
Sbjct: 649 TGATSRGSGGKQPRWQKPAAAGSES------------SAAAAVGQEAEARKKPRRRR--- 693
Query: 141 PLEEKGEGGEFSVDRPIIDRPIRGRGG---LGRGRGGRGRGMGRGDGFDSRGKREFDRHS 197
+ +G+GG+ + + P + RG LG+ RGG G G SRG S
Sbjct: 694 -AKSRGDGGQ---NAAVGINPWQRRGKKPRLGKSRGGGGAKSRGSGGAKSRGSGGAKSRS 749
Query: 198 GSDRSSFSHYSGLKHEDKRGGSGSHNWG 225
G ++ + G + +RGG G
Sbjct: 750 GKKAAASKSHGGGGAKRRRGGGAKSRSG 777
Score = 35.0 bits (79), Expect = 0.12
Identities = 49/213 (23%), Positives = 78/213 (36%), Gaps = 40/213 (18%)
Query: 38 KKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDR------------KNPLPPS 85
+K A GV G + +AAA + +GK+ R+ K R K+ +
Sbjct: 158 QKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKT 217
Query: 86 VGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEK 145
G KK P A + R G++P +Q + K R +K L +
Sbjct: 218 RGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQ 277
Query: 146 GE----------GGEFSVDRPIIDRPIRGRGGLG-RGRGGRGRGMGRGDGFDSRGKREFD 194
G+ G + ++P +GRGG G + GG+ GRG GK+
Sbjct: 278 GQNAALAGAKRRGAATAGEKP----AAKGRGGRGPKSLGGQNPRWGRG------GKKPRR 327
Query: 195 RHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTV 227
R + +++ + KRGG G V
Sbjct: 328 RGQKATKAAAA-------GTKRGGGGQQKAAVV 353
Score = 30.4 bits (67), Expect = 2.9
Identities = 48/183 (26%), Positives = 61/183 (33%), Gaps = 30/183 (16%)
Query: 32 KAAENKKKEAGGGGVGGPGAKSAAQAAAQTNS-NAAGKQLRKESQK----DRKNP---LP 83
+A ++ +K AG GG G AAA T S G++ R+ QK K P
Sbjct: 84 EARQHWQKAAGAGGAENRGGGEQKAAAAGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQ 143
Query: 84 PSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEG--KIIDRRPERRPPRER----- 136
S K A G++ G Q+ G ++P RR + R
Sbjct: 144 KSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDK 203
Query: 137 ----RFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGG-------RGRGMGRGDGF 185
R K K GG R RP GG RGG R RG G
Sbjct: 204 KGRQREAKSRFGKTRGGRRKKHR----RPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGG 259
Query: 186 DSR 188
SR
Sbjct: 260 KSR 262
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 41.2 bits (95), Expect = 0.002
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 164 GRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSH 222
GRGG G GRGGRG G+G G+ RG + + H G + G ++ G G H
Sbjct: 460 GRGGRG-GRGGRGGRAGQGGGWGGRGSQNY--HQGGQFEQHFQHGGYQYNHSGFGQGRH 515
Score = 35.0 bits (79), Expect = 0.12
Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 348 GRPGRGGRGGRGGRG--RGGRPNRGSR 372
GR GRGGRGGRGGR GG RGS+
Sbjct: 460 GRGGRGGRGGRGGRAGQGGGWGGRGSQ 486
Score = 33.1 bits (74), Expect = 0.45
Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 5/27 (18%)
Query: 345 GDLGRPGRGGRGGRGGR-GRGGRPNRG 370
GD G GGRGGRGGR GRGGR +G
Sbjct: 455 GDRG----GGRGGRGGRGGRGGRAGQG 477
Score = 30.0 bits (66), Expect = 3.8
Identities = 37/149 (24%), Positives = 50/149 (33%), Gaps = 30/149 (20%)
Query: 109 VGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGE--GGEFSVDRPIIDRP----- 161
+GR PD+ G I+ P PP ++R + P ++ G GG +
Sbjct: 299 MGRVPDRG--GRPNEIEPPPPEMPPWQKRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQ 356
Query: 162 ---IRGRGGLGRGRGGRGR-----------GMGRGDGFDSRGKREFDRHSGSDRSSFSH- 206
GRGG G G GR G G G G+ G R+ G S
Sbjct: 357 GGGRGGRGGYDHGGRGGGRGNKHQGGWTDGGSGGGGGYQDGGYRDSGFQPGGYHGGHSSG 416
Query: 207 ------YSGLKHEDKRGGSGSHNWGTVKD 229
Y G + GSG G +D
Sbjct: 417 GYQGGGYGGFQTSSSYTGSGYQGGGYQQD 445
Score = 28.9 bits (63), Expect = 8.4
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 348 GRPGRGGRGGRGGRGRGGR------PNRGSRTDKSSASAPDVDD 385
G GGRGGRGG GGR ++G TD S D
Sbjct: 353 GHEQGGGRGGRGGYDHGGRGGGRGNKHQGGWTDGGSGGGGGYQD 396
>gi|113415490 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|113415488 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|113415486 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|113415484 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|113415482 PREDICTED: Ubiquitin carboxyl-terminal hydrolase
17-like protein 5 [Homo sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|113415480 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|113415478 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|113415476 PREDICTED: similar to deubiquitinating enzyme 3 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239742297 PREDICTED: hypothetical protein XP_002342480 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239742295 PREDICTED: hypothetical protein XP_002342479 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239742293 PREDICTED: hypothetical protein XP_002342478 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239742291 PREDICTED: hypothetical protein XP_002342477 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239742289 PREDICTED: hypothetical protein XP_002342476 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRAKQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239742287 PREDICTED: hypothetical protein XP_002342475 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239742285 PREDICTED: hypothetical protein XP_002342486 [Homo
sapiens]
Length = 559
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239742282 PREDICTED: hypothetical protein XP_002342474 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDRWKFLQEQNKTKPEFNVRK 454
>gi|239742280 PREDICTED: hypothetical protein XP_002342473 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239742278 PREDICTED: hypothetical protein XP_002342472 [Homo
sapiens]
Length = 530
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 190 KREFDRHSGS-DRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEE 248
K E++RHS S R G + D+R G +L + + + PE +E
Sbjct: 375 KSEWERHSESVSRGREPRALGAEDTDRRATQG------------ELKRDHPCLQAPELDE 422
Query: 249 HHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 295
H + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 423 H---------------LVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,829,555
Number of Sequences: 37866
Number of extensions: 1089112
Number of successful extensions: 10013
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 338
Number of HSP's that attempted gapping in prelim test: 7413
Number of HSP's gapped (non-prelim): 2329
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.