Search of human proteins with 13540580

Search of human proteins with 13540580

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13540580 family with sequence similarity 49, member A [Homo
sapiens]
         (323 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13540580 family with sequence similarity 49, member A [Homo s...   648   0.0  
gi|42734438 hypothetical protein LOC51571 [Homo sapiens]              514   e-146
gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo...    36   0.040
gi|116805788 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]     34   0.15 
gi|82617634 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]      34   0.15 
gi|82617630 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]      34   0.15 
gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Ho...    32   1.00 
gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens]            30   2.9  
gi|156938343 talin 2 [Homo sapiens]                                    29   4.9  
gi|102469034 janus kinase 1 [Homo sapiens]                             29   6.5  
gi|74272278 aryl hydrocarbon receptor interacting protein-like 1...    29   6.5  
gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens]     28   8.4  
gi|169218268 PREDICTED: similar to Serine-protein kinase ATM, pa...    28   8.4  
gi|215820660 ATP-binding cassette, subfamily G, member 4 [Homo s...    28   8.4  
gi|20143975 ATP-binding cassette, subfamily G, member 4 [Homo sa...    28   8.4  

>gi|13540580 family with sequence similarity 49, member A [Homo
           sapiens]
          Length = 323

 Score =  648 bits (1672), Expect = 0.0
 Identities = 323/323 (100%), Positives = 323/323 (100%)

Query: 1   MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 60
           MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP
Sbjct: 1   MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 60

Query: 61  EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 120
           EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH
Sbjct: 61  EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 120

Query: 121 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 180
           LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN
Sbjct: 121 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 180

Query: 181 EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR 240
           EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR
Sbjct: 181 EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR 240

Query: 241 SRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLN 300
           SRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLN
Sbjct: 241 SRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLN 300

Query: 301 ALRFTTKHLNDESTSKQIRAMLQ 323
           ALRFTTKHLNDESTSKQIRAMLQ
Sbjct: 301 ALRFTTKHLNDESTSKQIRAMLQ 323


>gi|42734438 hypothetical protein LOC51571 [Homo sapiens]
          Length = 324

 Score =  514 bits (1324), Expect = e-146
 Identities = 257/324 (79%), Positives = 292/324 (90%), Gaps = 1/324 (0%)

Query: 1   MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 59
           MGNLLKVLT  ++E  P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1   MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60

Query: 60  PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 119
            EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS RLE AL+ LL +LT  PY+PTQ
Sbjct: 61  HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120

Query: 120 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 179
           HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+  + ENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180

Query: 180 NEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEY 239
           NE+ANRMSLFYAEATPMLKTLS+AT  FVSENK LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240

Query: 240 RSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLL 299
           RSRFT+EET+ FC+RVMVGVIILYDHVHPVGAF KTSKIDMKGCIKVLK+Q P+SVEGLL
Sbjct: 241 RSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLL 300

Query: 300 NALRFTTKHLNDESTSKQIRAMLQ 323
           NALR+TTKHLNDE+TSKQI++MLQ
Sbjct: 301 NALRYTTKHLNDETTSKQIKSMLQ 324


>gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo
           sapiens]
          Length = 327

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 112 CPPYTPTQHLEREQALA-KEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNM 170
           CPP  P +H E + +      A ++ F  RF+EL +  P       + RR +SR +I + 
Sbjct: 75  CPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELLVFVP-------HMRRFLSRKKIRH- 126

Query: 171 HLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTD 221
           H+ + N+V++   NR +L          +     MH V     LP+    D
Sbjct: 127 HIYVLNQVDHFRFNRAALINVGFLESSNSTDYIAMHDVD---LLPLNEELD 174


>gi|116805788 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]
          Length = 1253

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 67  QNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQA 126
           + PN +++ EK    + P V +L +F  F     KA++       C       H ER + 
Sbjct: 100 EQPNRVEIYEKTVEVLEPEVTKLMKFMYFQ---RKAIERF-----CSEVKRLCHAERRKD 151

Query: 127 LAKE-----FAEILHFTLRFDELKMRNPAIQNDFSYYRR 160
              E       + ++     DELK    +++ND S Y+R
Sbjct: 152 FVSEAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKR 190


>gi|82617634 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]
          Length = 1253

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 67  QNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQA 126
           + PN +++ EK    + P V +L +F  F     KA++       C       H ER + 
Sbjct: 100 EQPNRVEIYEKTVEVLEPEVTKLMKFMYFQ---RKAIERF-----CSEVKRLCHAERRKD 151

Query: 127 LAKE-----FAEILHFTLRFDELKMRNPAIQNDFSYYRR 160
              E       + ++     DELK    +++ND S Y+R
Sbjct: 152 FVSEAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKR 190


>gi|82617630 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]
          Length = 1253

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 67  QNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQA 126
           + PN +++ EK    + P V +L +F  F     KA++       C       H ER + 
Sbjct: 100 EQPNRVEIYEKTVEVLEPEVTKLMKFMYFQ---RKAIERF-----CSEVKRLCHAERRKD 151

Query: 127 LAKE-----FAEILHFTLRFDELKMRNPAIQNDFSYYRR 160
              E       + ++     DELK    +++ND S Y+R
Sbjct: 152 FVSEAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKR 190


>gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Homo
           sapiens]
          Length = 1253

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 17/135 (12%)

Query: 34  IWNQISAVLQDSESILADLQAYKGAG---PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLK 90
           + + ++ +L++ +     L  ++      P+++   + PN +++ EK    + P V +L 
Sbjct: 65  VHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVK-CNEQPNRVEIYEKTVEVLEPEVTKLM 123

Query: 91  RFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKE-----FAEILHFTLRFDELK 145
            F  F        ++ +E   C       H ER +    E       + ++     DELK
Sbjct: 124 NFMYFQ-------RNAIERF-CGEVRRLCHAERRKDFVSEAYLITLGKFINMFAVLDELK 175

Query: 146 MRNPAIQNDFSYYRR 160
               +++ND S Y+R
Sbjct: 176 NMKCSVKNDHSAYKR 190


>gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens]
          Length = 970

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 27/196 (13%)

Query: 9   TRE--IENYPHFFLDFE---NAQPTEGEREIWNQISAVLQDSES--ILADLQAYKGAGPE 61
           TRE   +N   F ++ E      P   E E+  Q   +  DS +  I+ +L+      PE
Sbjct: 92  TREPVTDNVEKFAIETELIYKYSPFRTEEEVMTQFMKIPGDSGTLVIIFNLKLMDNGEPE 151

Query: 62  IRDAIQNPNDIQLQE-------------KAWNAVCPLVVRLKRFYEFSIRLEKALQSLLE 108
           + D I NP DIQ+ E             +A+ AV  +  R++ F        K L   L 
Sbjct: 152 L-DIISNPRDIQMAETSPEGTKPERRSFRAYAAVLYIDPRMRIFIHGHKVQTKRLSCCLY 210

Query: 109 SLTCPPYTPTQ---HLEREQALAKEFAEILHFTLRFDELKMRNPAIQ--NDFSYYRRTIS 163
                 YT ++     E+E   A+  A I     R  E K R   ++   D +   R + 
Sbjct: 211 KPRMYKYTSSRFKTRAEQEVKKAEHVARIAEEKAREAESKARTLEVRLGGDLTRDSRVML 270

Query: 164 RNRINNMHLDIENEVN 179
           R ++ N  + +  E +
Sbjct: 271 R-QVQNRAITLRREAD 285


>gi|156938343 talin 2 [Homo sapiens]
          Length = 2542

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 27/219 (12%)

Query: 98   RLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSY 157
            R  +A+Q   ++L  P  +P+Q L     +AK  + + +   R    K  NP  +  F  
Sbjct: 1471 RANQAIQMACQNLVDPGSSPSQVLSAATIVAKHTSALCN-ACRIASSKTANPVAKRHFVQ 1529

Query: 158  YRRTISRNRINNMHL--DIENEVNNEMANRMSLFYAEATPMLKTLSNATM-----HFVSE 210
              + ++ +  N +     ++ + + +  N+  +  A   P+++ + N T       FVS 
Sbjct: 1530 SAKEVANSTANLVKTIKALDGDFSEDNRNKCRIATA---PLIEAVENLTAFASNPEFVSI 1586

Query: 211  NKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVG 270
               +  E +      + S  K MLE+  Y  R  +  +L    +      +L  H H V 
Sbjct: 1587 PAQISSEGSQAQEPILVS-AKTMLESSSYLIR--TARSLAINPKDPPTWSVLAGHSHTVS 1643

Query: 271  AFCKTSKIDMKGCIKVLKEQAPD------SVEGLLNALR 303
                     +K  I  ++++AP       S++G+   +R
Sbjct: 1644 D-------SIKSLITSIRDKAPGQRECDYSIDGINRCIR 1675


>gi|102469034 janus kinase 1 [Homo sapiens]
          Length = 1154

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 14/80 (17%)

Query: 145 KMRNPAIQNDFSY-------------YRRTISRNRINNMHLDIENEVNNEMANRMSLFYA 191
           KM+ P +  D SY              R  ++R RINN+  D   E NN+     S+   
Sbjct: 205 KMQLPELPKDISYKRYIPETLNKSIRQRNLLTRMRINNVFKDFLKEFNNKTICDSSVSTH 264

Query: 192 E-ATPMLKTLSNATMHFVSE 210
           +     L TL   T H+ +E
Sbjct: 265 DLKVKYLATLETLTKHYGAE 284


>gi|74272278 aryl hydrocarbon receptor interacting protein-like 1
           isoform 2 [Homo sapiens]
          Length = 321

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 14/93 (15%)

Query: 1   MGNLLKVLTREI-------ENYPHFFLDFENAQPTEGEREIWN-------QISAVLQDSE 46
           +GN+ K+   EI            F+ D     P++ +RE WN       +   VL    
Sbjct: 63  IGNMFKLEVWEILLTSMRVHEVAEFWCDTIVDAPSDYQRETWNLSNHEKMKAVPVLHGEG 122

Query: 47  SILADLQAYKGAGPEIRDAIQNPNDIQLQEKAW 79
           + L  L  Y+ A  + ++AI    ++Q +EK W
Sbjct: 123 NRLFKLGRYEEASSKYQEAIICLRNLQTKEKPW 155


>gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens]
          Length = 3056

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 239 YRSRFTSEETLMFCMRVMVGVIILY 263
           Y S  T+ ETL+ C R++VGV+  Y
Sbjct: 705 YSSEITNSETLVRCSRLLVGVLGCY 729


>gi|169218268 PREDICTED: similar to Serine-protein kinase ATM,
           partial [Homo sapiens]
          Length = 2934

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 239 YRSRFTSEETLMFCMRVMVGVIILY 263
           Y S  T+ ETL+ C R++VGV+  Y
Sbjct: 583 YSSEITNSETLVRCSRLLVGVLGCY 607


>gi|215820660 ATP-binding cassette, subfamily G, member 4 [Homo
           sapiens]
          Length = 646

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 215 PIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVII--LYDHV 266
           PIE+ T   ST+T  C +   T     R T    L F   V++GV+I  LY H+
Sbjct: 360 PIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYLHI 413


>gi|20143975 ATP-binding cassette, subfamily G, member 4 [Homo
           sapiens]
          Length = 646

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 215 PIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVII--LYDHV 266
           PIE+ T   ST+T  C +   T     R T    L F   V++GV+I  LY H+
Sbjct: 360 PIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYLHI 413


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,178,094
Number of Sequences: 37866
Number of extensions: 431509
Number of successful extensions: 1211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 17
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.