Guide to the Human Genome
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Name: TRH Sequence: fasta or formatted (242aa) NCBI GI: 6005920
Description:

thyrotropin-releasing hormone

Referenced in:

Organs and Hormones
Hypothalamus
Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         21           2
 C cysteine            0.4          1           1
 D aspartate           4.1         10           2
 E glutamate          15.3         37           8
 F phenylalanine       1.2          3           1
 G glycine            10.3         25           2
 H histidine           4.1         10           1
 I isoleucine          0.8          2           1
 K lysine              3.7          9           1
 L leucine            10.3         25           3
 M methionine          0.8          2           1
 N asparagine          0.8          2           1
 P proline             7.9         19           1
 Q glutamine           8.3         20           2
 R arginine           10.3         25           2
 S serine              4.1         10           1
 T threonine           1.7          4           1
 V valine              3.7          9           1
 W tryptophan          2.5          6           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thyrotropin-releasing hormone 
LOC100294088          0.046   PREDICTED: hypothetical protein, partial 
TCHH                  0.040   trichohyalin 
SUPT5H                0.036   suppressor of Ty 5 homolog isoform b 
ANP32E                0.033   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.033   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.033   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
SMARCA2               0.033   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.033   SWI/SNF-related matrix-associated actin-dependent re...
CNGB1                 0.031   cyclic nucleotide gated channel beta 1 isoform a [H...
GIGYF2                0.031   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.031   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.031   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.031   GRB10 interacting GYF protein 2 isoform b 
EHMT2                 0.031   euchromatic histone-lysine N-methyltransferase 2 is...
SUPT5H                0.031   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.031   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.031   suppressor of Ty 5 homolog isoform a 
RPGR                  0.029   retinitis pigmentosa GTPase regulator isoform C [Hom...
TCEAL3                0.029   transcription elongation factor A (SII)-like 3 [Homo...
TCEAL3                0.029   transcription elongation factor A (SII)-like 3 [Homo...
PELP1                 0.029   proline, glutamic acid and leucine rich protein 1 [...
EIF5B                 0.029   eukaryotic translation initiation factor 5B 
TCEAL5                0.029   transcription elongation factor A (SII)-like 5 [Homo...
MYST3                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
L1TD1                 0.029   LINE-1 type transposase domain containing 1 
MYST4                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
EIF3A                 0.027   eukaryotic translation initiation factor 3, subunit 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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