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Search of human proteins with 59859880
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|59859880 baculoviral IAP repeat-containing protein 5 isoform
2 [Homo sapiens]
(137 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|59859880 baculoviral IAP repeat-containing protein 5 isoform ... 305 6e-84
gi|59859878 baculoviral IAP repeat-containing protein 5 isoform ... 172 8e-44
gi|59859882 baculoviral IAP repeat-containing protein 5 isoform ... 171 1e-43
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens] 51 3e-07
gi|11545910 livin inhibitor of apoptosis isoform beta [Homo sapi... 45 1e-05
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap... 45 1e-05
gi|119393878 NLR family, apoptosis inhibitory protein isoform 1 ... 44 5e-05
gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo sa... 40 5e-04
gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo sap... 40 5e-04
gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo sa... 40 8e-04
gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo sap... 39 0.002
gi|119393876 NLR family, apoptosis inhibitory protein isoform 2 ... 38 0.003
gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens] 37 0.004
gi|224994221 SH3-domain binding protein 2 isoform b [Homo sapiens] 28 1.8
gi|239755684 PREDICTED: hypothetical protein [Homo sapiens] 28 2.4
gi|239750147 PREDICTED: hypothetical protein [Homo sapiens] 28 2.4
gi|239744457 PREDICTED: hypothetical protein [Homo sapiens] 28 2.4
gi|194328809 latent transforming growth factor beta binding prot... 28 3.1
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 28 3.1
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 27 5.3
gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [H... 26 9.0
gi|150456451 hypothetical protein LOC54914 [Homo sapiens] 26 9.0
>gi|59859880 baculoviral IAP repeat-containing protein 5 isoform 2
[Homo sapiens]
Length = 137
Score = 305 bits (782), Expect = 6e-84
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC 60
MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
Sbjct: 1 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC 60
Query: 61 FKELEGWEPDDDPMQRKPTIRRKNLRKLRRKCAVPSSSWLPWIEASGRSCLVPEWLHHFQ 120
FKELEGWEPDDDPMQRKPTIRRKNLRKLRRKCAVPSSSWLPWIEASGRSCLVPEWLHHFQ
Sbjct: 61 FKELEGWEPDDDPMQRKPTIRRKNLRKLRRKCAVPSSSWLPWIEASGRSCLVPEWLHHFQ 120
Query: 121 GLFPGATSLPVGPLAMS 137
GLFPGATSLPVGPLAMS
Sbjct: 121 GLFPGATSLPVGPLAMS 137
>gi|59859878 baculoviral IAP repeat-containing protein 5 isoform 1
[Homo sapiens]
Length = 142
Score = 172 bits (436), Expect = 8e-44
Identities = 73/75 (97%), Positives = 75/75 (100%)
Query: 1 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC 60
MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
Sbjct: 1 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC 60
Query: 61 FKELEGWEPDDDPMQ 75
FKELEGWEPDDDP++
Sbjct: 61 FKELEGWEPDDDPIE 75
>gi|59859882 baculoviral IAP repeat-containing protein 5 isoform 3
[Homo sapiens]
Length = 165
Score = 171 bits (434), Expect = 1e-43
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 1 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC 60
MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
Sbjct: 1 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC 60
Query: 61 FKELEGWEPDDDPM 74
FKELEGWEPDDDP+
Sbjct: 61 FKELEGWEPDDDPI 74
>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
Length = 4857
Score = 51.2 bits (121), Expect = 3e-07
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 17 HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
+R TF +WP + P+ MA+AGF H P + D A CF C L WEP D+P
Sbjct: 288 NRRETFTSWPHVGYRWAQPDPMAQAGFYHQPASSGDDRAMCFTCSVCLVCWEPTDEP 344
>gi|11545910 livin inhibitor of apoptosis isoform beta [Homo
sapiens]
Length = 280
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
R+++F +WP PE +A AGF H D +CFFC+ L+ W+ DDP
Sbjct: 90 RLASFYDWPLT--AEVPPELLAAAGFFHT---GHQDKVRCFFCYGGLQSWKRGDDP 140
>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
sapiens]
Length = 298
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
R+++F +WP PE +A AGF H D +CFFC+ L+ W+ DDP
Sbjct: 90 RLASFYDWPLT--AEVPPELLAAAGFFHT---GHQDKVRCFFCYGGLQSWKRGDDP 140
>gi|119393878 NLR family, apoptosis inhibitory protein isoform 1
[Homo sapiens]
Length = 1403
Score = 43.5 bits (101), Expect = 5e-05
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 15 KDHRISTFKNWPF-LEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
++ R+++F+NWPF ++G + P ++EAGF+ + D QCF C L WE DDP
Sbjct: 159 EEARLASFRNWPFYVQGIS--PCVLSEAGFVFT---GKQDTVQCFSCGGCLGNWEEGDDP 213
Score = 37.7 bits (86), Expect = 0.003
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPM 74
R+ +FK+WP A +A+AG + + D+ QCF C LE W+ DDP+
Sbjct: 281 RLDSFKDWP--RESAVGVAALAKAGLFYTGIK---DIVQCFSCGGCLEKWQEGDDPL 332
>gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 40.4 bits (93), Expect = 5e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
R TF NWP PE++A AGF + ++ +CF C L WE DDP
Sbjct: 258 RFKTFFNWP--SSVLVNPEQLASAGFYYVGNSDD---VKCFCCDGGLRCWESGDDP 308
Score = 37.7 bits (86), Expect = 0.003
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPM 74
R+ TF+ WP +P +A+AGF + D CF C +L WEP D+ M
Sbjct: 172 RLLTFQTWPLT---FLSPTDLAKAGFYYI---GPGDRVACFACGGKLSNWEPKDNAM 222
Score = 33.5 bits (75), Expect = 0.056
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 17 HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPMQR 76
+R+ST+ +P G + +A AGF + D +CF C L+ W+ D P ++
Sbjct: 31 YRMSTYSTFP--AGVPVSERSLARAGFYYTGVN---DKVKCFCCGLMLDNWKRGDSPTEK 85
Query: 77 K----PTIRRKNLRKLRRKCAVPSSSWLPWIEASGRSCLVP--EWLHHFQGLFPGATSLP 130
P+ R S P + L+P E +F+G + + S P
Sbjct: 86 HKKLYPSCRFVQSLNSVNNLEATSQPTFPSSVTNSTHSLLPGTENSGYFRGSYSNSPSNP 145
Query: 131 VGPLA 135
V A
Sbjct: 146 VNSRA 150
>gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 40.4 bits (93), Expect = 5e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
R TF NWP PE++A AGF + ++ +CF C L WE DDP
Sbjct: 258 RFKTFFNWP--SSVLVNPEQLASAGFYYVGNSDD---VKCFCCDGGLRCWESGDDP 308
Score = 37.7 bits (86), Expect = 0.003
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPM 74
R+ TF+ WP +P +A+AGF + D CF C +L WEP D+ M
Sbjct: 172 RLLTFQTWPLT---FLSPTDLAKAGFYYI---GPGDRVACFACGGKLSNWEPKDNAM 222
Score = 33.5 bits (75), Expect = 0.056
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 17 HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPMQR 76
+R+ST+ +P G + +A AGF + D +CF C L+ W+ D P ++
Sbjct: 31 YRMSTYSTFP--AGVPVSERSLARAGFYYTGVN---DKVKCFCCGLMLDNWKRGDSPTEK 85
Query: 77 K----PTIRRKNLRKLRRKCAVPSSSWLPWIEASGRSCLVP--EWLHHFQGLFPGATSLP 130
P+ R S P + L+P E +F+G + + S P
Sbjct: 86 HKKLYPSCRFVQSLNSVNNLEATSQPTFPSSVTNSTHSLLPGTENSGYFRGSYSNSPSNP 145
Query: 131 VGPLA 135
V A
Sbjct: 146 VNSRA 150
>gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo
sapiens]
Length = 497
Score = 39.7 bits (91), Expect = 8e-04
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 13 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 71
+ ++ R+ +F+NWP + TP +A AG + D QCF C +L+ WEP D
Sbjct: 161 YSEEARLKSFQNWP--DYAHLTPRELASAGLYYTGIG---DQVQCFCCGGKLKNWEPCD 214
Score = 37.0 bits (84), Expect = 0.005
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 12 PFLKDH--RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEP 69
P + D+ RI TF W + + E++A AGF E D +CF C L W+P
Sbjct: 260 PSMADYEARIFTFGTWIY----SVNKEQLARAGFYAL---GEGDKVKCFHCGGGLTDWKP 312
Query: 70 DDDPMQR 76
+DP ++
Sbjct: 313 SEDPWEQ 319
Score = 35.0 bits (79), Expect = 0.019
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 17 HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPMQR 76
+R+ TF N+P G + +A AGF++ E D +CF C ++ W+ D + R
Sbjct: 28 NRLKTFANFP--SGSPVSASTLARAGFLYT---GEGDTVRCFSCHAAVDRWQYGDSAVGR 82
>gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo
sapiens]
Length = 618
Score = 38.5 bits (88), Expect = 0.002
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 5 TLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKEL 64
T P ++ ++ R T+ WP +P +A AGF + D CF C +L
Sbjct: 174 TNPYSYAMSTEEARFLTYHMWPLT---FLSPSELARAGFYYI---GPGDRVACFACGGKL 227
Query: 65 EGWEPDDDPM 74
WEP DD M
Sbjct: 228 SNWEPKDDAM 237
Score = 37.4 bits (85), Expect = 0.004
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
R+ TF WP PE++A AGF + ++ +CF C L WE DDP
Sbjct: 272 RMRTFMYWP--SSVPVQPEQLASAGFYYVGRNDD---VKCFCCDGGLRCWESGDDP 322
Score = 34.3 bits (77), Expect = 0.033
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 17 HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPMQR 76
+R+ST+ +P G + +A AGF + D +CF C L+ W+ D P+Q+
Sbjct: 48 YRMSTYSTFP--AGVPVSERSLARAGFYYTGVN---DKVKCFCCGLMLDNWKLGDSPIQK 102
>gi|119393876 NLR family, apoptosis inhibitory protein isoform 2
[Homo sapiens]
Length = 1241
Score = 37.7 bits (86), Expect = 0.003
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPM 74
R+ +FK+WP A +A+AG + + D+ QCF C LE W+ DDP+
Sbjct: 119 RLDSFKDWP--RESAVGVAALAKAGLFYTGIK---DIVQCFSCGGCLEKWQEGDDPL 170
>gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens]
Length = 236
Score = 37.4 bits (85), Expect = 0.004
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPMQR 76
R+ TF W + + E++A AGF E D QCF C L W+P +DP ++
Sbjct: 7 RLITFGTWMY----SVNKEQLARAGFYAIGQE---DKVQCFHCGGGLANWKPKEDPWEQ 58
>gi|224994221 SH3-domain binding protein 2 isoform b [Homo
sapiens]
Length = 618
Score = 28.5 bits (62), Expect = 1.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 2 GAPTLPPAWQPFLKDHRISTFKNWPF------LEGCACTPERMAEAGFIH 45
G P +P AW PF+ + +WP + P +A+AG++H
Sbjct: 46 GKPAMPAAWTPFMAAEEM----HWPVPMKAIGAQNLLTMPGGVAKAGYLH 91
>gi|239755684 PREDICTED: hypothetical protein [Homo sapiens]
Length = 415
Score = 28.1 bits (61), Expect = 2.4
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 35 PERMAEAGFIHCPTENEP------DLAQCFFCFKELEGWEPDDDPMQRKPTIRRKNLRKL 88
P R A +H +++P L Q L G D + RR +
Sbjct: 187 PHRNARDHLVHSQLQSQPLELGLRGLLQQEIREHVLRGQLSDGHGCGAPGSTRRSGYSRR 246
Query: 89 RRKCAVPSSSWLPWIEASGRSCLVP 113
R CA PS S P S CL+P
Sbjct: 247 RESCAAPSPSHRPGARLSLSLCLLP 271
>gi|239750147 PREDICTED: hypothetical protein [Homo sapiens]
Length = 415
Score = 28.1 bits (61), Expect = 2.4
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 35 PERMAEAGFIHCPTENEP------DLAQCFFCFKELEGWEPDDDPMQRKPTIRRKNLRKL 88
P R A +H +++P L Q L G D + RR +
Sbjct: 187 PHRNARDHLVHSQLQSQPLELGLRGLLQQEIREHVLRGQLSDGHGCGAPGSTRRSGYSRR 246
Query: 89 RRKCAVPSSSWLPWIEASGRSCLVP 113
R CA PS S P S CL+P
Sbjct: 247 RESCAAPSPSHRPGARLSLSLCLLP 271
>gi|239744457 PREDICTED: hypothetical protein [Homo sapiens]
Length = 351
Score = 28.1 bits (61), Expect = 2.4
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 35 PERMAEAGFIHCPTENEP------DLAQCFFCFKELEGWEPDDDPMQRKPTIRRKNLRKL 88
P R A +H +++P L Q L G D + RR +
Sbjct: 123 PHRNARDHLVHSQLQSQPLELGLRGLLQQEIREHVLRGQLSDGHGCGAPGSTRRSGYSRR 182
Query: 89 RRKCAVPSSSWLPWIEASGRSCLVP 113
R CA PS S P S CL+P
Sbjct: 183 RESCAAPSPSHRPGARLSLSLCLLP 207
>gi|194328809 latent transforming growth factor beta binding protein 3
isoform 1 [Homo sapiens]
Length = 1303
Score = 27.7 bits (60), Expect = 3.1
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 20/85 (23%)
Query: 31 CACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPMQRKPTIRRKNL-RKLR 89
CACTP C + E D+ +C DP +P R NL R
Sbjct: 1060 CACTPPAEYSPAQRQCLSPEEMDVDEC-------------QDPAACRPG-RCVNLPGSYR 1105
Query: 90 RKCAVPSSSWLPWIEASGRSCLVPE 114
+C P W+P SGR C +PE
Sbjct: 1106 CECRPP---WVP--GPSGRDCQLPE 1125
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 27.7 bits (60), Expect = 3.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 75 QRKPTIRRKNLRKLRRKCAVPSSSWLPWIEASGRSCLVPEW 115
+R P + ++N +K+ A P W+E + + P+W
Sbjct: 2645 ERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDW 2685
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 26.9 bits (58), Expect = 5.3
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 14/54 (25%)
Query: 29 EGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKE-------LEGWEPDDDPMQ 75
EGC C P+++ G C E C C E LE W PD P Q
Sbjct: 2233 EGCFCPPDKVMLEG--SCVPEEA-----CTQCIGEDGVQHQFLEAWVPDHQPCQ 2279
>gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [Homo
sapiens]
Length = 4515
Score = 26.2 bits (56), Expect = 9.0
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 47 PTENEPDLAQCFFCFKELEGWEPDDDPMQRKPTIRRKN-----LRKLRRKCAVPSSSWLP 101
P +P L +CF K+L W+ D P K I + +K+R + AV WL
Sbjct: 1320 PESVQPHLVKCFENIKQLLIWKQDIGPPAVKMLISAEGEGLVLPKKIRVRSAV--EQWLV 1377
Query: 102 WIEAS 106
+E S
Sbjct: 1378 NVEKS 1382
>gi|150456451 hypothetical protein LOC54914 [Homo sapiens]
Length = 1801
Score = 26.2 bits (56), Expect = 9.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 96 SSSWLPWIEASGRSCLVPEWL 116
S+SWLPW + +G + VP +L
Sbjct: 1696 SASWLPWHQENGPAGPVPSFL 1716
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.496
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,914,426
Number of Sequences: 37866
Number of extensions: 325738
Number of successful extensions: 632
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 34
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.