Search of human proteins with 5902152

Search of human proteins with 5902152

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5902152 uroplakin 3A precursor [Homo sapiens]
         (287 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5902152 uroplakin 3A precursor [Homo sapiens]                      573   e-164
gi|33149306 uroplakin 3B isoform b [Homo sapiens]                     103   1e-22
gi|167555123 uroplakin-like protein [Homo sapiens]                     47   1e-05
gi|222537743 protein tyrosine phosphatase, receptor type, Q [Hom...    37   0.026
gi|13399330 uroplakin 3B isoform a [Homo sapiens]                      37   0.026
gi|70995130 cholinergic receptor, nicotinic, alpha 9 precursor [...    32   0.49 
gi|5803215 uroplakin 2 [Homo sapiens]                                  32   0.64 
gi|58761502 Obg-like ATPase 1 isoform 2 [Homo sapiens]                 30   2.4  
gi|58761500 Obg-like ATPase 1 isoform 1 [Homo sapiens]                 30   2.4  
gi|54873613 agrin [Homo sapiens]                                       30   3.2  
gi|41352712 inhibitor of nuclear factor kappa B kinase beta subu...    30   3.2  
gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens]             29   4.2  
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]             29   4.2  
gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens]             29   4.2  
gi|168229161 coronin 7 [Homo sapiens]                                  29   4.2  

>gi|5902152 uroplakin 3A precursor [Homo sapiens]
          Length = 287

 Score =  573 bits (1478), Expect = e-164
 Identities = 287/287 (100%), Positives = 287/287 (100%)

Query: 1   MPPLWALLALGCLRFGSAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHE 60
           MPPLWALLALGCLRFGSAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHE
Sbjct: 1   MPPLWALLALGCLRFGSAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHE 60

Query: 61  VYLYVLVDSAISRNASVQDSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIG 120
           VYLYVLVDSAISRNASVQDSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIG
Sbjct: 61  VYLYVLVDSAISRNASVQDSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIG 120

Query: 121 DVSKASQILNAYLVRVGANGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQT 180
           DVSKASQILNAYLVRVGANGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQT
Sbjct: 121 DVSKASQILNAYLVRVGANGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQT 180

Query: 181 LWSDPIRTNQLTPYSTIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIALSLVDMGSS 240
           LWSDPIRTNQLTPYSTIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIALSLVDMGSS
Sbjct: 181 LWSDPIRTNQLTPYSTIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIALSLVDMGSS 240

Query: 241 DGETTHDSQITQEAVPKSLGASESSYTSVNRGPPLDRAEVYSSKLQD 287
           DGETTHDSQITQEAVPKSLGASESSYTSVNRGPPLDRAEVYSSKLQD
Sbjct: 241 DGETTHDSQITQEAVPKSLGASESSYTSVNRGPPLDRAEVYSSKLQD 287


>gi|33149306 uroplakin 3B isoform b [Homo sapiens]
          Length = 276

 Score =  103 bits (258), Expect = 1e-22
 Identities = 81/225 (36%), Positives = 108/225 (48%), Gaps = 23/225 (10%)

Query: 7   LLALGCLRFGSAVNLQPQLASVTF--ATNNPTLTTVALEKPLCMFDSKEALTGTHEVYLY 64
           LLAL CLR   ++ L P    +T        T TT +LE+P C+FD   + + T  V+L 
Sbjct: 16  LLALNCLRPSLSLELVPYTPQITAWDLEGKVTATTFSLEQPRCVFDGLASASDT--VWLV 73

Query: 65  VLVDSAISRNASVQDSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIGDVSK 124
           V   +A     + +   + P     L      T P      D +PC D P   + G    
Sbjct: 74  VAFSNASRGFQNPETLADIPASPQLLTDGHYMTLPLSP---DQLPCGD-PMAGSGG---- 125

Query: 125 ASQILNAYLVRVGANGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQTLWSD 184
                 A ++RVG +  C   P     CNAPL     YR K++L++ + G    +T WSD
Sbjct: 126 ------APVLRVGHDHGCHQQP----FCNAPLPGPGPYRVKFLLMD-TRGSPRAETKWSD 174

Query: 185 PIRTNQLTPYSTIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGA 229
           PI  +Q     +IDTWPGRRSG MIVITSIL SL   LL+ F  A
Sbjct: 175 PITLHQGKTPGSIDTWPGRRSGSMIVITSILSSLAGLLLLAFLAA 219


>gi|167555123 uroplakin-like protein [Homo sapiens]
          Length = 263

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 30/205 (14%)

Query: 19  VNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHEVYLYVLVDSAISRNASVQ 78
           ++  PQL++ T A    TL+T  LE+PL  F S   ++    ++L V + +A     + +
Sbjct: 43  ISYVPQLSNDTLA-GRLTLSTFTLEQPLGQFSSHN-ISDLDTIWLVVALSNATQSFTAPR 100

Query: 79  DSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIGDVSKASQILNAYLVRVGA 138
            + + P  + F Q      G Y  +  + +       L               +++RVG 
Sbjct: 101 TNQDIPAPANFSQR-----GYYLTLRANRVLYQTRGQL---------------HVLRVGN 140

Query: 139 NGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQTLWSDPIRTNQLTPYSTID 198
           +  C   P   G CN PL     YR K++++N    + E  T WS   R  Q      + 
Sbjct: 141 DTHC--QPTKIG-CNHPLPGPGPYRVKFLVMNDEGPVAE--TKWSSDTRLQQAQALRAV- 194

Query: 199 TWPGRRSGGMIVITSILGSLPFFLL 223
             PG +S G +VI +IL  L   LL
Sbjct: 195 --PGPQSPGTVVIIAILSILLAVLL 217


>gi|222537743 protein tyrosine phosphatase, receptor type, Q [Homo
            sapiens]
          Length = 2299

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 130  NAYLVRVGANGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQTLWSDPIRT 188
            N  +  +GA+  C+   N   +CN PL    +Y FK+   N+     +    +SDP++T
Sbjct: 1838 NEEIYIIGADNACMIPGNEDKICNGPLKPKKQYLFKFRATNIMGQFTDSD--YSDPVKT 1894


>gi|13399330 uroplakin 3B isoform a [Homo sapiens]
          Length = 320

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 20/128 (15%)

Query: 36  TLTTVALEKPLCMFDSKEALTGTHEVYLYVLVDSAISRNASVQDSTNTPLGSTFLQTEGG 95
           T TT +LE+P C+FD   + + T  V+L V   +A     + +   + P     L     
Sbjct: 102 TATTFSLEQPRCVFDGLASASDT--VWLVVAFSNASRGFQNPETLADIPASPQLLTDGHY 159

Query: 96  RTGPYKAVAFDLIPCSDLPSLDAIGDVSKASQILNAYLVRVGANGTCLWDPNFQGLCNAP 155
            T P   ++ D +PC D P   + G          A ++RVG +  C   P     CNAP
Sbjct: 160 MTLP---LSPDQLPCGD-PMAGSGG----------APVLRVGHDHGCHQQP----FCNAP 201

Query: 156 LSAATEYR 163
           L     YR
Sbjct: 202 LPGPGPYR 209


>gi|70995130 cholinergic receptor, nicotinic, alpha 9 precursor
           [Homo sapiens]
          Length = 479

 Score = 32.3 bits (72), Expect = 0.49
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 115 SLDAIGDVSKASQILNAYLV--RVGANGTCLWDPN-FQGLCNAPLSAATEYRFKYVLVNM 171
           +L  I D+ + +QIL AYL   ++  +    WD + + GL +  + +   +R   VL N 
Sbjct: 63  TLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNK 122

Query: 172 STGLVEDQTLWSDPIRTNQLTPYSTIDTW 200
           +    +D++  S+P+ TN +  Y  + TW
Sbjct: 123 A----DDES--SEPVNTNVVLRYDGLITW 145


>gi|5803215 uroplakin 2 [Homo sapiens]
          Length = 184

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 204 RSGGMIVITSILGSLPFFLLVGFAGAIAL 232
           R+GGM+VIT +L    F L++GF  A+AL
Sbjct: 152 RTGGMVVITVLLSVAMFLLVLGFIIALAL 180


>gi|58761502 Obg-like ATPase 1 isoform 2 [Homo sapiens]
          Length = 238

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/43 (30%), Positives = 27/43 (62%)

Query: 219 PFFLLVGFAGAIALSLVDMGSSDGETTHDSQITQEAVPKSLGA 261
           P  L++ F+GA+ L L ++ + + +   ++ +TQ A+PK + A
Sbjct: 98  PGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKA 140


>gi|58761500 Obg-like ATPase 1 isoform 1 [Homo sapiens]
          Length = 396

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/43 (30%), Positives = 27/43 (62%)

Query: 219 PFFLLVGFAGAIALSLVDMGSSDGETTHDSQITQEAVPKSLGA 261
           P  L++ F+GA+ L L ++ + + +   ++ +TQ A+PK + A
Sbjct: 256 PGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKA 298


>gi|54873613 agrin [Homo sapiens]
          Length = 2045

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 230  IALSLVDMGSSDGETTHDSQITQEAVPKSLGASESSYTS--VNRGPPLDRAEVYSSKL 285
            +A +  + GS+DG +  +    QEA     G  E    S     GPP++RA  Y+S L
Sbjct: 1053 VASAFGESGSTDGSSDEELSGDQEASGGGSGGLEPLEGSSVATPGPPVERASCYNSAL 1110


>gi|41352712 inhibitor of nuclear factor kappa B kinase beta subunit
           [Homo sapiens]
          Length = 756

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 4   LWALLALGCLRFGSAVNLQP------QLASVTFATNNPTLTTVALEKPLCMFDSKEALTG 57
           LW LL + C +    V+  P      +L+      + P+  + +L +P     S+E +  
Sbjct: 654 LWNLLKIACSKVRGPVSGSPDSMNASRLSQPGQLMSQPSTASNSLPEPAKK--SEELVAE 711

Query: 58  THEVYLYVLVDSAISRNASVQDSTNTPLGSTFLQTE 93
            H   L  L+++AI      QD + T L  ++LQTE
Sbjct: 712 AHN--LCTLLENAIQDTVREQDQSFTALDWSWLQTE 745


>gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens]
          Length = 1941

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 155  PLSAATEYRFKYVLVNMSTG-----LVEDQTLWSDPIRTNQLTPYSTIDTWPGRRSG 206
            PLSA   Y+ + VL ++ +G     L+    L+ +P+ T Q  PY +    PG  SG
Sbjct: 1274 PLSAGNIYQKRPVLGDIVSGPVLSCLLHIARLYGEPVLTYQYLPYISYLVAPGSASG 1330


>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
          Length = 2240

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 155  PLSAATEYRFKYVLVNMSTG-----LVEDQTLWSDPIRTNQLTPYSTIDTWPGRRSG 206
            PLSA   Y+ + VL ++ +G     L+    L+ +P+ T Q  PY +    PG  SG
Sbjct: 1573 PLSAGNIYQKRPVLGDIVSGPVLSCLLHIARLYGEPVLTYQYLPYISYLVAPGSASG 1629


>gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens]
          Length = 1941

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 155  PLSAATEYRFKYVLVNMSTG-----LVEDQTLWSDPIRTNQLTPYSTIDTWPGRRSG 206
            PLSA   Y+ + VL ++ +G     L+    L+ +P+ T Q  PY +    PG  SG
Sbjct: 1274 PLSAGNIYQKRPVLGDIVSGPVLSCLLHIARLYGEPVLTYQYLPYISYLVAPGSASG 1330


>gi|168229161 coronin 7 [Homo sapiens]
          Length = 925

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 236 DMGSSDGETTHDSQITQEAVPKSLGASESSYTSVNRGPPL 275
           D  +S+G ++  S +T  + P SLG S SS + +   P L
Sbjct: 421 DADASEGFSSPPSSLTSPSTPSSLGPSLSSTSGIGTSPSL 460


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,290,938
Number of Sequences: 37866
Number of extensions: 403440
Number of successful extensions: 840
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 17
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.