POLS 33756

Name: POLS	Sequence: fasta or formatted (542aa)		NCBI GI: 5902142
Description: DNA polymerase sigma		Referenced in: DNA Polymerases Polyadenylation
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 32 2 C cysteine 1.1 6 1 D aspartate 3.7 20 1 E glutamate 5.0 27 2 F phenylalanine 2.6 14 2 G glycine 7.2 39 3 H histidine 2.8 15 2 I isoleucine 5.4 29 2 K lysine 5.5 30 2 L leucine 9.4 51 2 M methionine 3.1 17 1 N asparagine 3.1 17 2 P proline 7.9 43 3 Q glutamine 4.1 22 1 R arginine 6.1 33 2 S serine 10.3 56 2 T threonine 6.1 33 2 V valine 6.3 34 2 W tryptophan 0.9 5 1 Y tyrosine 3.5 19 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 DNA polymerase sigma PAPD5 0.444 PAP associated domain containing 5 isoform a PAPD5 0.430 PAP associated domain containing 5 isoform b PAPD4 0.040 PAP associated domain containing 4 PAPD4 0.040 PAP associated domain containing 4 PAPD4 0.040 PAP associated domain containing 4 ZCCHC6 0.031 zinc finger, CCHC domain containing 6 ZCCHC11 0.023 zinc finger, CCHC domain containing 11 isoform a [Ho... ZCCHC11 0.023 zinc finger, CCHC domain containing 11 isoform b [Ho... ZCCHC11 0.023 zinc finger, CCHC domain containing 11 isoform c [Ho... RBBP6 0.020 retinoblastoma-binding protein 6 isoform 2 MUC12 0.018 PREDICTED: mucin 12 RBBP6 0.017 retinoblastoma-binding protein 6 isoform 1 LOC100130716 0.015 PREDICTED: similar to mucin 11 LOC100130716 0.015 PREDICTED: similar to Mucin-12 MUC12 0.014 PREDICTED: mucin 12, cell surface associated MUC4 0.014 mucin 4 isoform a LOC284297 0.013 hypothetical protein LOC284297 SELV 0.013 selenoprotein V TNRC18 0.012 trinucleotide repeat containing 18 FLJ22184 0.012 PREDICTED: hypothetical protein FLJ22184 NFRKB 0.012 nuclear factor related to kappaB binding protein is... NFRKB 0.012 nuclear factor related to kappaB binding protein iso... SFPQ 0.012 splicing factor proline/glutamine rich (polypyrimidin... C11orf24 0.012 hypothetical protein LOC53838 NACA 0.012 nascent polypeptide-associated complex alpha subuni... MUC2 0.011 mucin 2 precursor PELP1 0.011 proline, glutamic acid and leucine rich protein 1 [... ZBTB3 0.011 zinc finger and BTB domain containing 3 PRDM2 0.010 retinoblastoma protein-binding zinc finger protein i... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.