Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAP1B Sequence: fasta or formatted (184aa) NCBI GI: 58219792
Description:

RAP1B, member of RAS oncogene family

Referenced in:

Ras

Other entries for this name:
alt mRNA [184aa] RAP1B, member of RAS oncogene family
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         10           1
 C cysteine            2.2          4           1
 D aspartate           7.1         13           2
 E glutamate           6.5         12           1
 F phenylalanine       3.8          7           1
 G glycine             6.5         12           2
 H histidine           0.0          0           0
 I isoleucine          4.9          9           1
 K lysine              7.6         14           2
 L leucine             9.2         17           2
 M methionine          2.7          5           1
 N asparagine          4.9          9           2
 P proline             2.2          4           1
 Q glutamine           8.2         15           2
 R arginine            5.4         10           1
 S serine              5.4         10           2
 T threonine           4.9          9           1
 V valine              9.2         17           2
 W tryptophan          0.5          1           1
 Y tyrosine            3.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAP1B, member of RAS oncogene family 
RAP1B                 1.000   RAP1B, member of RAS oncogene family 
RAP1A                 0.938   RAP1A, member of RAS oncogene family 
RAP1A                 0.938   RAP1A, member of RAS oncogene family 
RAP2B                 0.584   RAP2B, member of RAS oncogene family 
RAP2A                 0.581   RAP2A, member of RAS oncogene family 
RAP2C                 0.575   RAP2C, member of RAS oncogene family 
KRAS                  0.516   c-K-ras2 protein isoform b precursor 
KRAS                  0.501   c-K-ras2 protein isoform a precursor 
HRAS                  0.501   v-Ha-ras Harvey rat sarcoma viral oncogene homolog ...
HRAS                  0.501   v-Ha-ras Harvey rat sarcoma viral oncogene homolog is...
NRAS                  0.490   neuroblastoma RAS viral (v-ras) oncogene homolog [Hom...
RRAS2                 0.472   related RAS viral (r-ras) oncogene homolog 2 isoform...
HRAS                  0.460   v-Ha-ras Harvey rat sarcoma viral oncogene homolog i...
RALA                  0.452   ras related v-ral simian leukemia viral oncogene hom...
MRAS                  0.452   muscle RAS oncogene homolog 
MRAS                  0.452   muscle RAS oncogene homolog 
RIT1                  0.449   Ras-like without CAAX 1 
RIT2                  0.440   Ras-like without CAAX 2 
RALB                  0.425   v-ral simian leukemia viral oncogene homolog B 
RRAS                  0.422   related RAS viral (r-ras) oncogene homolog 
DIRAS2                0.381   Di-Ras2 
RERG                  0.358   RAS-like, estrogen-regulated, growth inhibitor [Homo...
DIRAS1                0.355   DIRAS family, GTP-binding RAS-like 1 
LOC100133211          0.349   PREDICTED: similar to related RAS viral (r-ras) onc...
LOC100133211          0.349   PREDICTED: similar to related RAS viral (r-ras) onc...
LOC100133211          0.349   PREDICTED: similar to related RAS viral (r-ras) onc...
RHEB                  0.314   Ras homolog enriched in brain 
RAB12                 0.264   RAB12, member RAS oncogene family 
RASD2                 0.261   RASD family, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press