Guide to the Human Genome
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Name: SPANXN1 Sequence: fasta or formatted (72aa) NCBI GI: 57528121
Description:

SPANX-N1 protein

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          3           1
 C cysteine            2.8          2           1
 D aspartate           4.2          3           1
 E glutamate          12.5          9           1
 F phenylalanine       1.4          1           1
 G glycine             1.4          1           1
 H histidine           1.4          1           1
 I isoleucine          2.8          2           1
 K lysine             11.1          8           2
 L leucine             5.6          4           1
 M methionine          4.2          3           1
 N asparagine          9.7          7           2
 P proline             6.9          5           1
 Q glutamine           5.6          4           1
 R arginine            4.2          3           1
 S serine             12.5          9           2
 T threonine           5.6          4           1
 V valine              1.4          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SPANX-N1 protein 
SPANXN5               0.848   SPANX family, member N5 
SPANXN3               0.656   SPANX-N3 protein 
SPANXN2               0.640   SPANX-N2 protein 
SPANXN4               0.352   SPANX family, member N4 
SPANXC                0.320   sperm protein associated with the nucleus, X chromos...
SPANXA1               0.304   sperm protein associated with the nucleus, X chromos...
SPANXA2               0.304   sperm protein associated with the nucleus, X chromos...
SPANXB1               0.256   SPANX family, member B1 
SPANXB2               0.256   sperm protein associated with the nucleus, X chromos...
SPANXF1               0.256   SPANX family, member F1 
SPANXE                0.256   SPANX family, member E 
SPANXD                0.248   SPANX family, member D 
MSL1                  0.040   hampin 
CXorf67               0.024   hypothetical protein LOC340602 
PXN                   0.024   paxillin isoform 2 
PXN                   0.024   paxillin isoform 1 
ALPK2                 0.016   heart alpha-kinase 
BTK                   0.016   Bruton agammaglobulinemia tyrosine kinase 
NASP                  0.016   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.016   nuclear autoantigenic sperm protein isoform 1 
EVI1                  0.016   ecotropic viral integration site 1 isoform a 
EVI1                  0.016   ecotropic viral integration site 1 isoform b 
EVI1                  0.016   ecotropic viral integration site 1 isoform b 
SPDYE6                0.008   speedy homolog E6 
LOC100129932          0.008   PREDICTED: hypothetical protein 
LOC442572             0.008   PREDICTED: hypothetical protein 
LOC100129932          0.008   PREDICTED: hypothetical protein 
LOC100287807          0.008   PREDICTED: hypothetical protein 
LOC100129932          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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