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Search of human proteins with 56550077
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56550077 RAB40A, member RAS oncogene family [Homo sapiens]
(277 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56550077 RAB40A, member RAS oncogene family [Homo sapiens] 563 e-161
gi|73611940 RAB40A, member RAS oncogene family-like [Homo sapiens] 550 e-157
gi|5803163 RAB40B, member RAS oncogene family [Homo sapiens] 486 e-138
gi|46195789 RAB40C, member RAS oncogene family [Homo sapiens] 432 e-121
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 147 1e-35
gi|16933567 mel transforming oncogene [Homo sapiens] 145 3e-35
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 144 1e-34
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 143 1e-34
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 143 1e-34
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 143 1e-34
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 142 3e-34
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 133 1e-31
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 132 4e-31
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 132 4e-31
gi|50234889 RAB43 protein [Homo sapiens] 132 4e-31
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 130 1e-30
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 129 3e-30
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 124 9e-29
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 124 9e-29
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 122 3e-28
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 121 6e-28
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 120 1e-27
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 117 8e-27
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 117 1e-26
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 115 3e-26
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 115 3e-26
gi|19923483 GTPase Rab14 [Homo sapiens] 115 4e-26
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 115 5e-26
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 114 7e-26
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 113 2e-25
>gi|56550077 RAB40A, member RAS oncogene family [Homo sapiens]
Length = 277
Score = 563 bits (1452), Expect = e-161
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG 60
MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
Sbjct: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG 60
Query: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP
Sbjct: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
Query: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM 180
KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM
Sbjct: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM 180
Query: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 241 YSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKIS 277
YSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKIS
Sbjct: 241 YSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKIS 277
>gi|73611940 RAB40A, member RAS oncogene family-like [Homo sapiens]
Length = 278
Score = 550 bits (1418), Expect = e-157
Identities = 272/278 (97%), Positives = 274/278 (98%), Gaps = 1/278 (0%)
Query: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG 60
MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDG AESPYSHLGGIDYKTTTILLDG
Sbjct: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDG 60
Query: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP
Sbjct: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
Query: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM 180
KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR+
Sbjct: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRL 180
Query: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLP LRSHLKSFSMAKGLNARMMRGLS
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAKGLNARMMRGLS 240
Query: 241 YSLTTSSTHK-SSLCKVEIVCPPQSPPKNCTRNSCKIS 277
YSLTTSSTHK SSLCKV+IVCPPQSPPKNCTRNSCKIS
Sbjct: 241 YSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCKIS 278
>gi|5803163 RAB40B, member RAS oncogene family [Homo sapiens]
Length = 278
Score = 486 bits (1252), Expect = e-138
Identities = 245/278 (88%), Positives = 256/278 (92%), Gaps = 1/278 (0%)
Query: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG 60
MSA GSP +AYDFLLKFLLVGD DVGK EIL SLQDGAAESPY H GIDYKTTTILLDG
Sbjct: 1 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG 60
Query: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
+RVKL+LWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF+G+DRWIK+I+EHAPGVP
Sbjct: 61 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP 120
Query: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM 180
KILVGNRLHLAFKRQVP EQAQAYAERLGVTFFEVSPLCNFNI ESFTELARIVLLRH M
Sbjct: 121 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM 180
Query: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
+ L RPSKVLSLQDLCCR +VSCTPVHLVDKLPLP LRSHLKSFSMA GLNARMM G S
Sbjct: 181 DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS 240
Query: 241 YSLTTSSTHK-SSLCKVEIVCPPQSPPKNCTRNSCKIS 277
YSLTTSSTHK SSL KV++V PPQSPPKNCTRNSCKIS
Sbjct: 241 YSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS 278
>gi|46195789 RAB40C, member RAS oncogene family [Homo sapiens]
Length = 281
Score = 432 bits (1110), Expect = e-121
Identities = 207/281 (73%), Positives = 247/281 (87%), Gaps = 4/281 (1%)
Query: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG 60
M + GSP ++YD+LLKFLLVGD DVGK EILESLQDGAAESPY++ GIDYKTTTILLDG
Sbjct: 1 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG 60
Query: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
+RV+L+LWDTSGQGRFCTIFRSYSRGAQG++LVYDI NRWSF+G+DRWIK+I+EHAPGVP
Sbjct: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVP 120
Query: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM 180
+ILVGNRLHLAFKRQVP EQA+AYAE+ +TFFEVSPLCNFN+IESFTEL+RIVL+RH M
Sbjct: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGM 180
Query: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
+ RP++V SLQDLCCR IVSCTPVHL+DKLPLP T++SHLKSFSMA G+NA MM G S
Sbjct: 181 EKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGRS 240
Query: 241 YSLTTSS----THKSSLCKVEIVCPPQSPPKNCTRNSCKIS 277
YSL + + + +SL + + + PPQSPP+NC+R++CKIS
Sbjct: 241 YSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRSNCKIS 281
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 147 bits (371), Expect = 1e-35
Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 1/170 (0%)
Query: 9 QAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLW 68
+AYD L K LL+GD VGK+ ++ + + Y GID+K T+ ++G+++KL++W
Sbjct: 3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNR 127
DT+GQ RF TI +Y RGA G+ILVYDI + SFE + W+K I+E+A GV ++L+GN+
Sbjct: 63 DTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNK 122
Query: 128 LHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLR 177
+ KR+V +EQA A G+ FFE S + N+ E+F+ LAR +LL+
Sbjct: 123 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 172
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 145 bits (367), Expect = 3e-35
Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 1/165 (0%)
Query: 9 QAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLW 68
+ YD+L K LL+GD VGK+ +L + A S + GID+K TI LDG+R+KL++W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-VPKILVGNR 127
DT+GQ RF TI +Y RGA G++LVYDI N SF+ + WI+ IEEHA V K+++GN+
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 128 LHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELAR 172
+ KRQV +E+ + A G+ F E S N N+ +F LAR
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 144 bits (362), Expect = 1e-34
Identities = 75/176 (42%), Positives = 112/176 (63%), Gaps = 3/176 (1%)
Query: 9 QAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLW 68
+ YD+L K LL+GD VGK+ +L + A + + GID+K TI LDG+++KL++W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-VPKILVGNR 127
DT+GQ RF TI +Y RGA G++LVYDI N SF+ + WI+ IEEHA V ++++GN+
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
Query: 128 LHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVL--LRHRMN 181
+ KRQV +E+ + A G+ F E S + N+ E+F LAR ++ L +MN
Sbjct: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMN 178
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 143 bits (361), Expect = 1e-34
Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 1/170 (0%)
Query: 9 QAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLW 68
+AYD L K LL+GD VGK+ ++ + + Y GID+K T+ ++G+++KL++W
Sbjct: 127 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 186
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNR 127
DT+GQ RF TI +Y RGA G+IL YDI + SFE + W+K I E+A GV +L+GN+
Sbjct: 187 DTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNK 246
Query: 128 LHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLR 177
+ KR+V +EQA A G+ FFE S + N+ E+F+ LAR +LL+
Sbjct: 247 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 296
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 143 bits (361), Expect = 1e-34
Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 1/170 (0%)
Query: 9 QAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLW 68
+AYD L K LL+GD VGK+ ++ + + Y GID+K T+ ++G+++KL++W
Sbjct: 127 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 186
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNR 127
DT+GQ RF TI +Y RGA G+IL YDI + SFE + W+K I E+A GV +L+GN+
Sbjct: 187 DTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNK 246
Query: 128 LHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLR 177
+ KR+V +EQA A G+ FFE S + N+ E+F+ LAR +LL+
Sbjct: 247 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 296
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 143 bits (361), Expect = 1e-34
Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 1/170 (0%)
Query: 9 QAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLW 68
+AYD L K LL+GD VGK+ ++ + + Y GID+K T+ ++G+++KL++W
Sbjct: 127 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 186
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNR 127
DT+GQ RF TI +Y RGA G+IL YDI + SFE + W+K I E+A GV +L+GN+
Sbjct: 187 DTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNK 246
Query: 128 LHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLR 177
+ KR+V +EQA A G+ FFE S + N+ E+F+ LAR +LL+
Sbjct: 247 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 296
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 142 bits (358), Expect = 3e-34
Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 1/168 (0%)
Query: 9 QAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLW 68
+ YD L K LL+GD VGK+ +L D A + + GID+K T+ L G+++KL++W
Sbjct: 4 KTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIW 63
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNR 127
DT+GQ RF TI SY RGA G++LVYDI N SFE + +W++ I+EHA V ++L+GN+
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNK 123
Query: 128 LHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVL 175
+ KR VP+ + A G+ FFE S N NI ++F LA +L
Sbjct: 124 CDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDIL 171
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 133 bits (335), Expect = 1e-31
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 1/167 (0%)
Query: 6 SPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKL 65
S + YD+L K LL+GD VGKS +L D Y G+D+K TI LDG+ +KL
Sbjct: 3 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 62
Query: 66 KLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILV 124
++WDT+GQ RF TI SY RGA G+I+VYD+ ++ SF + +W+++I+ +A V K+LV
Sbjct: 63 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 122
Query: 125 GNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELA 171
GN+ L K+ V A+ +A+ LG+ F E S N+ +SF +A
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 169
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 132 bits (331), Expect = 4e-31
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 5 GSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVK 64
G+ D YD+L K +L+GD VGKS +L G+++ T +I +DG+ +K
Sbjct: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 65 LKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKIL 123
++WDT+GQ R+ I +Y RGA G +LVYDIA ++E ++RW+K++ +HA + +L
Sbjct: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
Query: 124 VGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESF----TELARIV 174
VGN+ L R VP ++A+A+AE+ ++F E S L + N+ E+F TE+ RIV
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 176
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 132 bits (331), Expect = 4e-31
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 5 GSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVK 64
G+ D YD+L K +L+GD VGKS +L G+++ T +I +DG+ +K
Sbjct: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 65 LKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKIL 123
++WDT+GQ R+ I +Y RGA G +LVYDIA ++E ++RW+K++ +HA + +L
Sbjct: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
Query: 124 VGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESF----TELARIV 174
VGN+ L R VP ++A+A+AE+ G++F E S L + N+ +F TE+ RIV
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 132 bits (331), Expect = 4e-31
Identities = 69/177 (38%), Positives = 107/177 (60%), Gaps = 2/177 (1%)
Query: 4 PGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRV 63
PG PD+ YDFL K +LVGD VGK+ +++ + GA G+D+ T+ + G+RV
Sbjct: 8 PGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV 67
Query: 64 KLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKI 122
KL++WDT+GQ RF TI +SY R A G IL YDI R SF + WI+ + ++A + ++
Sbjct: 68 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL 127
Query: 123 LVGNRLHLAFKRQVPREQAQAYAERLGV-TFFEVSPLCNFNIIESFTELARIVLLRH 178
L+GN+ L+ R+V +AQ+ AE + E S + N+ E+F +A +++RH
Sbjct: 128 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 184
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 130 bits (328), Expect = 1e-30
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 1/162 (0%)
Query: 11 YDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDT 70
YD+L K LL+GD VGKS +L D Y G+D+K TI LDG+ +KL++WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLH 129
+GQ RF TI SY RGA G+I+VYD+ ++ S+ + +W+++I+ +A V K+LVGN+
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 130 LAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELA 171
L K+ V A+ +A+ LG+ F E S N+ ++F +A
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMA 166
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 129 bits (324), Expect = 3e-30
Identities = 66/171 (38%), Positives = 100/171 (58%)
Query: 11 YDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDT 70
YD L K L++GD VGKS +L D Y G+D+K T+ ++G++VKL++WDT
Sbjct: 5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 64
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVPKILVGNRLHL 130
+GQ RF TI +Y RG GVI+VYD+ + SF + RW+ +I ++ V +ILVGN+
Sbjct: 65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDD 124
Query: 131 AFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRMN 181
++ V E A +A ++G+ FE S N N+ E F + +VL + N
Sbjct: 125 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 175
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 124 bits (311), Expect = 9e-29
Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 1/170 (0%)
Query: 6 SPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKL 65
S DQ +D++ K L++G+ VGK+ L D + S + GID+K T+ + +R+KL
Sbjct: 22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKL 81
Query: 66 KLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILV 124
++WDT+GQ R+ TI +Y RGA G IL+YDI N SF + W +I+ ++ ILV
Sbjct: 82 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV 141
Query: 125 GNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIV 174
GN+ + +R + E+ Q E+LG FFE S N N+ ++F L I+
Sbjct: 142 GNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 124 bits (311), Expect = 9e-29
Identities = 66/191 (34%), Positives = 116/191 (60%), Gaps = 4/191 (2%)
Query: 7 PDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLK 66
P + DF L+ +++G R VGK+ ++E D G+D+K T+ L G++++L+
Sbjct: 35 PPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 94
Query: 67 LWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVG 125
+WDT+GQ RF +I +Y R A+G+ILVYDI + +F+ + +W+K I+++A +LVG
Sbjct: 95 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 154
Query: 126 NRLHLAFKRQVPREQAQAYAERL-GVTFFEVSPLCNFNIIESFTELARIVLLRHRMNWLG 184
N+L R++ R+Q + +A+++ G+ F E S NFN+ E F +L +L + ++ L
Sbjct: 155 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILR 214
Query: 185 R--PSKVLSLQ 193
+ +LSLQ
Sbjct: 215 NELSNSILSLQ 225
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 122 bits (307), Expect = 3e-28
Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Query: 8 DQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKL 67
DQ +D++ K LL+G+ VGK+ L D + + GID+K T+ +R+KL++
Sbjct: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75
Query: 68 WDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGN 126
WDT+GQ R+ TI +Y RGA G +L+YDIAN+ SF + W +I+ ++ ILVGN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
Query: 127 RLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRMNWLGRP 186
+ L +R VP E + A+ LG FFE S N N+ + F L ++ +MN P
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC--EKMNESLEP 193
Query: 187 S 187
S
Sbjct: 194 S 194
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 121 bits (304), Expect = 6e-28
Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
Query: 8 DQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKL 67
DQ +D++ K L++G+ VGK+ L D + GID+K T+ +RVKL++
Sbjct: 16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 75
Query: 68 WDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGN 126
WDT+GQ R+ TI +Y RGA G IL+YDI N SF + W +I+ ++ ILVGN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 135
Query: 127 RLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTEL 170
+ + +R VP E+ Q AE+LG FFE S N ++ ++F L
Sbjct: 136 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 179
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 120 bits (302), Expect = 1e-27
Identities = 62/170 (36%), Positives = 98/170 (57%), Gaps = 1/170 (0%)
Query: 6 SPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKL 65
S DQ +D++ K L++G+ VGK+ L D + + GID+K TI + +R+KL
Sbjct: 14 SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKL 73
Query: 66 KLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILV 124
++WDT+GQ R+ TI +Y RGA G IL+YDI N SF + W +I+ ++ +LV
Sbjct: 74 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 133
Query: 125 GNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIV 174
GN+ + +R V E+ + A+ LG FFE S N N+ ++F L ++
Sbjct: 134 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 183
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 117 bits (294), Expect = 8e-27
Identities = 64/185 (34%), Positives = 110/185 (59%), Gaps = 2/185 (1%)
Query: 2 SAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQ 61
S+ + D+ +D+L K +L+GD +VGK+ +++ + G + G+D+ ++ +DG+
Sbjct: 5 SSARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGK 64
Query: 62 RVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEH-APGVP 120
+VK+++WDT+GQ RF TI +SY R A I+ YD+ R +FE + WI +IE++ A V
Sbjct: 65 KVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVV 124
Query: 121 KILVGNRLHLAFKRQVPREQAQAYAERLG-VTFFEVSPLCNFNIIESFTELARIVLLRHR 179
+L+GN+ L KR V E A AE+ G + E S + NI E F +A+ ++ R+
Sbjct: 125 IMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNS 184
Query: 180 MNWLG 184
++ G
Sbjct: 185 LHLYG 189
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 117 bits (292), Expect = 1e-26
Identities = 58/164 (35%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Query: 10 AYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWD 69
AY +L K++++GD VGKS +L D + + G+++ I +DG+++KL++WD
Sbjct: 2 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 61
Query: 70 TSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRL 128
T+GQ F +I RSY RGA G +LVYDI R +F + W++ +H+ + +L+GN+
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 121
Query: 129 HLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELAR 172
L +R+V +E+ +A+A G+ F E S N+ E+F A+
Sbjct: 122 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 115 bits (289), Expect = 3e-26
Identities = 61/174 (35%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 11 YDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDT 70
YDFL K +L+G+ VGK+ ++ G G+D+ T+ ++G++VKL++WDT
Sbjct: 6 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 65
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-VPKILVGNRLH 129
+GQ RF +I +SY R A +IL YDI SF + W+++IE++A V +LVGN++
Sbjct: 66 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 125
Query: 130 LAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRMNWL 183
LA +R+V +++A+ ++E + + E S + N+ + F +LA ++ R N L
Sbjct: 126 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL 179
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 115 bits (289), Expect = 3e-26
Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 7/176 (3%)
Query: 4 PGSPDQA-----YDFLLKFLLVGDRDVGKSEILESLQDGA-AESPYSHLGGIDYKTTTIL 57
PG P YD K +LVGD VGK+ +L +DGA + GID++ +
Sbjct: 48 PGRPSLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD 107
Query: 58 LDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAP 117
+DG +VKL++WDT+GQ RF ++ +Y R A ++L+YD+ N+ SF+ + W+ +I E+A
Sbjct: 108 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 167
Query: 118 -GVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELAR 172
V +L+GN++ A +R V RE + A+ G+ F E S N+ +FT +A+
Sbjct: 168 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 223
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 115 bits (288), Expect = 4e-26
Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 11 YDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDT 70
Y ++ K++++GD VGKS +L + + H G+++ T I + GQ++KL++WDT
Sbjct: 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 67
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLH 129
+GQ RF + RSY RGA G ++VYDI R ++ + W+ P IL+GN+
Sbjct: 68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 127
Query: 130 LAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELAR 172
L +R V E+A+ +AE G+ F E S N+ ++F E A+
Sbjct: 128 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 170
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 115 bits (287), Expect = 5e-26
Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 11 YDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDT 70
Y +L K++++GD VGKS +L D + + G+++ + +DG+++KL++WDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 71 SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEH-APGVPKILVGNRLH 129
+GQ F +I RSY RGA G +LVYDI R +F + W++ +H + + +L+GN+
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 130 LAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELAR 172
L +R V RE+ +A+A G+ F E S N+ E+F A+
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 165
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 114 bits (286), Expect = 7e-26
Identities = 60/168 (35%), Positives = 97/168 (57%), Gaps = 1/168 (0%)
Query: 9 QAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLW 68
+ YDFL KFL++G GKS +L + + +H G+++ + + + G+ VKL++W
Sbjct: 3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNR 127
DT+GQ RF ++ RSY RGA G +LVYDI +R ++ + W+ A P + IL GN+
Sbjct: 63 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 122
Query: 128 LHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVL 175
L +R+V +A +A+ + F E S L N+ E+F + AR +L
Sbjct: 123 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 170
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 113 bits (282), Expect = 2e-25
Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 2 SAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAES-PYSHLGGIDYKTTTILLDG 60
S P SP +YD K +L+GD VGK+ L +DGA S + GID++ + +DG
Sbjct: 19 SPPCSP--SYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDG 76
Query: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAP-GV 119
RVKL++WDT+GQ RF ++ +Y R AQ ++L+YDI N+ SF+ + W+ +I E+A V
Sbjct: 77 VRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDV 136
Query: 120 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELAR 172
+L+GN+ ++ +R + E + A GV F E S N+ +F +A+
Sbjct: 137 VIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAK 189
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,121,022
Number of Sequences: 37866
Number of extensions: 463265
Number of successful extensions: 1458
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 235
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.