Search of human proteins with 134288859

Search of human proteins with 134288859

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|134288859 glycosyltransferase 6 domain containing 1 [Homo
sapiens]
         (276 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134288859 glycosyltransferase 6 domain containing 1 [Homo sap...   581   e-166
gi|32484985 globoside alpha-1,3-N-acetylgalactosaminyltransferas...   170   1e-42
gi|122937275 alpha 1,3-galactosyltransferase 2 [Homo sapiens]         169   3e-42
gi|58331216 ABO blood group (alpha 1-3-N-acetylgalactosaminyltra...   156   2e-38
gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens neandert...    29   5.1  
gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]               29   5.1  

>gi|134288859 glycosyltransferase 6 domain containing 1 [Homo
           sapiens]
          Length = 276

 Score =  581 bits (1498), Expect = e-166
 Identities = 276/276 (100%), Positives = 276/276 (100%)

Query: 1   MNSKRMLLLVLFAFSLMLVERYFRNHQVEELRLSDWFHPRKRPDVITKTDWLAPVLWEGT 60
           MNSKRMLLLVLFAFSLMLVERYFRNHQVEELRLSDWFHPRKRPDVITKTDWLAPVLWEGT
Sbjct: 1   MNSKRMLLLVLFAFSLMLVERYFRNHQVEELRLSDWFHPRKRPDVITKTDWLAPVLWEGT 60

Query: 61  FDRRVLEKHYRRRNITVGLAVFATGRFAEEYLRPFLHSANKHFMTGYRVIFYIMVDAFFK 120
           FDRRVLEKHYRRRNITVGLAVFATGRFAEEYLRPFLHSANKHFMTGYRVIFYIMVDAFFK
Sbjct: 61  FDRRVLEKHYRRRNITVGLAVFATGRFAEEYLRPFLHSANKHFMTGYRVIFYIMVDAFFK 120

Query: 121 LPDIEPSPLRTFKAFKVGTERWWLDGPLVHVKSLGEHIASHIQDEVDFLFSMAANQVFQN 180
           LPDIEPSPLRTFKAFKVGTERWWLDGPLVHVKSLGEHIASHIQDEVDFLFSMAANQVFQN
Sbjct: 121 LPDIEPSPLRTFKAFKVGTERWWLDGPLVHVKSLGEHIASHIQDEVDFLFSMAANQVFQN 180

Query: 181 EFGVETLGPLVAQLHAWWYFRNTKNFPYERRPTSAACIPFGQGDFYYGNLMVGGTPHNIL 240
           EFGVETLGPLVAQLHAWWYFRNTKNFPYERRPTSAACIPFGQGDFYYGNLMVGGTPHNIL
Sbjct: 181 EFGVETLGPLVAQLHAWWYFRNTKNFPYERRPTSAACIPFGQGDFYYGNLMVGGTPHNIL 240

Query: 241 DFIKEYLNGVIHDIKNGLNSTYEKHLNKYFYLNKPT 276
           DFIKEYLNGVIHDIKNGLNSTYEKHLNKYFYLNKPT
Sbjct: 241 DFIKEYLNGVIHDIKNGLNSTYEKHLNKYFYLNKPT 276


>gi|32484985 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
           [Homo sapiens]
          Length = 347

 Score =  170 bits (430), Expect = 1e-42
 Identities = 91/261 (34%), Positives = 147/261 (56%), Gaps = 7/261 (2%)

Query: 22  YFRNHQVEELRLSDWFHPR---KRP-DVITKTDWLAPVLWEGTFDRRVLEKHYRRRNITV 77
           Y R   ++ +  S +  P+    RP  ++T T WLAP++ EGTF+  +L+  Y+  N+T+
Sbjct: 52  YKREKPLQPVVWSQYPQPKLLEHRPTQLLTLTPWLAPIVSEGTFNPELLQHIYQPLNLTI 111

Query: 78  GLAVFATGRFAEEYLRPFLHSANKHFMTGYRVIFYIMVDAFFKLPDIEPSPLRTFKAFKV 137
           G+ VFA G++   +++ FL SA + FM GYRV +YI  D    +P +   P R   +  +
Sbjct: 112 GVTVFAVGKYTH-FIQSFLESAEEFFMRGYRVHYYIFTDNPAAVPGVPLGPHRLLSSIPI 170

Query: 138 GTERWWLDGPLVHVKSLGEHIASHIQDEVDFLFSMAANQVFQNEFGVETLGPLVAQLHAW 197
                W +  +  ++++ +HIA     EVD+LF +  + VF+N +G ETLG LVA +H  
Sbjct: 171 QGHSHWEETSMRRMETISQHIAKRAHREVDYLFCLDVDMVFRNPWGPETLGDLVAAIHPS 230

Query: 198 WYFRNTKNFPYERRPTSAACIPFGQGDFYYGNLMVGGTPHNILDFIKEYLNGVIHDIKNG 257
           +Y    + FPYERR  S A +   +GDFYYG  + GG    + +F +     ++ D  NG
Sbjct: 231 YYAVPRQQFPYERRRVSTAFVADSEGDFYYGGAVFGGQVARVYEFTRGCHMAILADKANG 290

Query: 258 LNSTY--EKHLNKYFYLNKPT 276
           + + +  E HLN++F  NKP+
Sbjct: 291 IMAAWREESHLNRHFISNKPS 311


>gi|122937275 alpha 1,3-galactosyltransferase 2 [Homo sapiens]
          Length = 340

 Score =  169 bits (427), Expect = 3e-42
 Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 2/239 (0%)

Query: 39  PRKRPDVITKTDWLAPVLWEGTFDRRVLEKHYRRRNITVGLAVFATGRFAEEYLRPFLHS 98
           P  RP+V+T T W AP++W+G+FD  V ++  R++N+T+GL +FA GR+ E+YL  FL +
Sbjct: 65  PWARPEVLTCTPWGAPIIWDGSFDPDVAKQEARQQNLTIGLTIFAVGRYLEKYLERFLET 124

Query: 99  ANKHFMTGYRVIFYIMVDAFFKLPDIEPSPLRTFKAFKVGTERWWLDGPLVHVKSLGEHI 158
           A +HFM G  V++Y+  +    +P +   P R     +V  ER W D  +  +++L   +
Sbjct: 125 AEQHFMAGQSVMYYVFTELPGAVPRVALGPGRRLPVERVARERRWQDVSMARMRTLHAAL 184

Query: 159 ASHIQDEVDFLFSMAANQVFQNEFGVETLGPLVAQLHAWWYFRNTKNFPYERRPTSAACI 218
                 E  F+F M  +Q F   FG E L   VAQLH+W Y   +   P+ER   SAA +
Sbjct: 185 GGLPGREAHFMFCMDVDQHFSGTFGPEALAESVAQLHSWHYHWPSWLLPFERDAHSAAAM 244

Query: 219 PFGQGDFYYGNLMVGGTPHNILDFIKEYLNGVIHDIKNGLNSTY--EKHLNKYFYLNKP 275
            +GQGDFY    + GG+   +         G+  D   GL + +  E HLNK+F+L+KP
Sbjct: 245 AWGQGDFYNHAAVFGGSVAALRGLTAHCAGGLDWDRARGLEARWHDESHLNKFFWLHKP 303


>gi|58331216 ABO blood group (alpha
           1-3-N-acetylgalactosaminyltransferase, alpha
           1-3-galactosyltransferase) [Homo sapiens]
          Length = 354

 Score =  156 bits (395), Expect = 2e-38
 Identities = 94/292 (32%), Positives = 148/292 (50%), Gaps = 22/292 (7%)

Query: 6   MLLLVLFAFSLML--------VERYF-----RNHQVEELRLSDWFHPRK------RPDVI 46
           ML+LVLF + ++         +ER F         ++ + L    +P+       R DV+
Sbjct: 26  MLVLVLFGYGVLSPRSLMPGSLERGFCMAVREPDHLQRVSLPRMVYPQPKVLTPCRKDVL 85

Query: 47  TKTDWLAPVLWEGTFDRRVLEKHYRRRNITVGLAVFATGRFAEEYLRPFLHSANKHFMTG 106
             T WLAP++WEGTF+  +L + +R +N T+GL VFA  ++   +L+ FL +A KHFM G
Sbjct: 86  VVTPWLAPIVWEGTFNIDILNEQFRLQNTTIGLTVFAIKKYVA-FLKLFLETAEKHFMVG 144

Query: 107 YRVIFYIMVDAFFKLPDIEPSPLRTFKAFKVGTERWWLDGPLVHVKSLGEHIASHIQDEV 166
           +RV +Y+  D    +P +     R     +V   + W D  +  ++ + +        EV
Sbjct: 145 HRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYKRWQDVSMRRMEMISDFCERRFLSEV 204

Query: 167 DFLFSMAANQVFQNEFGVETLGPLVAQLHAWWYFRNTKNFPYERRPTSAACIPFGQGDFY 226
           D+L  +  +  F++  GVE L PL   LH  +Y  + + F YERRP S A IP  +GDFY
Sbjct: 205 DYLVCVDVDMEFRDHVGVEILTPLFGTLHPGFYGSSREAFTYERRPQSQAYIPKDEGDFY 264

Query: 227 YGNLMVGGTPHNILDFIKEYLNGVIHDIKNGLNSTY--EKHLNKYFYLNKPT 276
           Y     GG+   +    +     ++ D  NG+ + +  E HLNKY   +KPT
Sbjct: 265 YLGGFFGGSVQEVQRLTRACHQAMMVDQANGIEAVWHDESHLNKYLLRHKPT 316


>gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens
           neanderthalensis]
          Length = 603

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 166 VDFLFSMAANQVFQNEFGVETLGPLVAQLHAWWYFRNTKN 205
           +  L  + AN +FQ   G E +G +   L +WWY R   N
Sbjct: 126 ITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADAN 165


>gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]
          Length = 603

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 166 VDFLFSMAANQVFQNEFGVETLGPLVAQLHAWWYFRNTKN 205
           +  L  + AN +FQ   G E +G +   L +WWY R   N
Sbjct: 126 ITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADAN 165


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.142    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,688,536
Number of Sequences: 37866
Number of extensions: 473714
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 8
length of query: 276
length of database: 18,247,518
effective HSP length: 101
effective length of query: 175
effective length of database: 14,423,052
effective search space: 2524034100
effective search space used: 2524034100
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.